mRNA_E_fasciculatus_S2_contig829.16436.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig829.16436.1
Unique NamemRNA_E_fasciculatus_S2_contig829.16436.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig829.16436.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWV5_9PHAE)

HSP 1 Score: 334 bits (857), Expect = 1.800e-112
Identity = 163/169 (96.45%), Postives = 165/169 (97.63%), Query Frame = 2 
Query:   98 MTVNVPWSTLRPNPRDQRERAAAEFPGGGEAPPLDKDGEAEIAWDVTDFGKRMAFGGIVGGVTGITFGAMDGHRAIRDDSTGKFPTTALKTKEFTRLTALSGTIFTGFFCTYQGMKYGAKLARKEDDFWNVLIASVGSFAPMLAVPAMRSRYPYAAILIAMDTLNNHVL 604
            MTVNVPWSTLRPNPRDQRERAAAEFPGGG+APPLDKDGE EIAWDVTDFGKRMAFGGIVGGVTGITFGAMDGHRAIRDDS GKFPTTALKTKEFTRLTALSGTIFTGFFCTYQGMKYGAKLARKEDDFWNVLIAS GSFAPML VPAMRSRYPYAAILIAMDTLNNH+L
Sbjct:    1 MTVNVPWSTLRPNPRDQRERAAAEFPGGGKAPPLDKDGEPEIAWDVTDFGKRMAFGGIVGGVTGITFGAMDGHRAIRDDSMGKFPTTALKTKEFTRLTALSGTIFTGFFCTYQGMKYGAKLARKEDDFWNVLIASAGSFAPMLVVPAMRSRYPYAAILIAMDTLNNHIL 169
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BLAST of mRNA_E_fasciculatus_S2_contig829.16436.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQU0_9STRA)

HSP 1 Score: 147 bits (370), Expect = 3.330e-39
Identity = 81/167 (48.50%), Postives = 108/167 (64.67%), Query Frame = 2 
Query:  104 VNVPWSTLRPNPRDQRERAAAEFPGGGEAPPLDKDGEAEIAWDVTDFGKRMAFGGIVGGVTGITFGAMDGHRAIRDDSTGKFPTTALKTKEFTRLTALSGTIFTGFFCTYQGMKYGAKLARKEDDFWNVLIASVGSFAPMLAVPAMRSRYPYAAILIAMDTLNNHVL 604
            VNVPW  LR NPR +R+R + E     E+ P + D      +D+    +++ FG   GGVTGI FG MD HR I    TG+F T A K KE TR+TA +GT+F G+F  YQG+KYG +  R ED F+NV +A+  S AP++  PA+R+R PY A L+A+DTLN+HVL
Sbjct:    6 VNVPWRELRHNPRTERDRLS-EAELSDESKP-ESDATFMDRFDMGMMNRKLIFGVACGGVTGIMFGLMDSHRVI--SKTGQFFTLAAKVKETTRMTAFTGTVFGGYFAAYQGIKYGIQAYRGEDTFFNVFMATAISIAPVVPFPALRARLPYMAFLVAIDTLNSHVL 168
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig829.16436.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.800e-11296.45protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Uncharacterized3.330e-3948.50protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig829contigE_fasciculatus_S2_contig829:16989..19604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score87.8
Seed ortholog evalue5.3e-15
Seed eggNOG ortholog65071.PYU1_T013902
Model size1160
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.function. Source PGD
EggNOG OGs1MGYM@121069,2DR8T@1,2S6DK@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003320.1
Cds size510
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig829.16436.1prot_E_fasciculatus_S2_contig829.16436.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig829 17086..19051 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842489.2608864-UTR-E_fasciculatus_S2_contig829:16988..170851696842489.2608864-UTR-E_fasciculatus_S2_contig829:16988..17085Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig829 16989..17085 +
1696842489.311272-UTR-E_fasciculatus_S2_contig829:19051..196041696842489.311272-UTR-E_fasciculatus_S2_contig829:19051..19604Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig829 19052..19604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842489.2713826-CDS-E_fasciculatus_S2_contig829:17085..172591696842489.2713826-CDS-E_fasciculatus_S2_contig829:17085..17259Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig829 17086..17259 +
1696842489.2803774-CDS-E_fasciculatus_S2_contig829:17731..177651696842489.2803774-CDS-E_fasciculatus_S2_contig829:17731..17765Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig829 17732..17765 +
1696842489.2898932-CDS-E_fasciculatus_S2_contig829:18159..182711696842489.2898932-CDS-E_fasciculatus_S2_contig829:18159..18271Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig829 18160..18271 +
1696842489.301587-CDS-E_fasciculatus_S2_contig829:18861..190511696842489.301587-CDS-E_fasciculatus_S2_contig829:18861..19051Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig829 18862..19051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig829.16436.1

>prot_E_fasciculatus_S2_contig829.16436.1 ID=prot_E_fasciculatus_S2_contig829.16436.1|Name=mRNA_E_fasciculatus_S2_contig829.16436.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=170bp
MTVNVPWSTLRPNPRDQRERAAAEFPGGGEAPPLDKDGEAEIAWDVTDFG
KRMAFGGIVGGVTGITFGAMDGHRAIRDDSTGKFPTTALKTKEFTRLTAL
SGTIFTGFFCTYQGMKYGAKLARKEDDFWNVLIASVGSFAPMLAVPAMRS
RYPYAAILIAMDTLNNHVL*
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mRNA from alignment at E_fasciculatus_S2_contig829:16989..19604+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig829.16436.1 ID=mRNA_E_fasciculatus_S2_contig829.16436.1|Name=mRNA_E_fasciculatus_S2_contig829.16436.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2616bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig829:16989..19604+ (Ectocarpus fasciculatus EfasUO2)
GCTCTTCCACCTGCAGCAGTCAAAGCTGCGGCAAGCAGCCAGCAGCGACG
ACGACGGGGAACTGTTTTCTTGTGTCTTCAAAGACAGTTGGTAGAAGATG
ACCGTGAACGTTCCATGGTCGACACTGAGGCCCAATCCACGAGATCAGCG
CGAGAGAGCCGCAGCAGAGTTCCCAGGCGGCGGAGAGGCGCCGCCCTTGG
ACAAGGACGGGGAGGCTGAAATCGCATGGGATGTCACGGACTTTGGCAAA
CGCATGGCCTTTGGAGGCATTGTGAGTAGCAGACCCGGAGACGCGCCTGT
TCTTCCCCGCCCGCTACATTGTACTGCAGATACTCCTGTGTTGGCAACCT
GATCTACTGTACTCTGTCGCTATCTACTACCGCCGTATGCATACACCGCA
CATAACTTTCCCAGCTCGATTGCGCCGCCCGCCCACAACCAGAGGGCTGG
CTGTCAATGCCACTAGGGTGGTATGTGGGTTGATTTCTTCGACAGCCTTC
CTTGCACGTATCGGTCGGATTTTGAACCCTCTTGGATGTATGTATGCATA
GAGCACTCGAGCTTTGAAAGTCTACAATAGGGTGTGCGATGGCTGCACTG
TCATCTGCTGCTCGTGGCATGTCCGTTAGGTTGTTGGTGTGCTATGCATA
TGCTACAGCAGTACATCCGACGCTTGATCGTGTCATAATGACTGACTTCT
GCCTCCCTACGCCTCGTTTCTCGCGTGTATCGATCTTGAACAGGTCGGGG
GCGTCACGGGGATAACGTTCGGAGCAAGTGAGTCGGGGATGAAAGGGTTG
ATATCCGCTCACATGCAGACAAACGTGTATATAGTCTACCATCATGATCC
GCCTACTCCTTCCTCCTGCATTTCGGAAGCCGTACGTTGACATGGAAGAT
TGCACGCCCATAGATGCATGCATCACTTGCCCCACATTATAAGCAGCTGT
AGTTACGGCGGTGTTTTAGCTCGGTAGACTCTGCAGTGAGTGTGCACAAC
CATGAGTTGCTCACCTGCAGAGACTCTGGACAACAATATCTCGCCGATGG
GCGGGTTCGATACTGAGCACCAAACCCCCAGGTTGAAACCGATTCAGACC
GATGTTTGATGACCTTGCACCCCATTAATCCAAGGTTGCTGCTGCACGTG
TGTTGTCCGTGATTGTCGCAGTGGATGGTCATAGAGCAATCCGCGACGAT
TCTACGGGGAAGTTCCCCACCACAGCGCTCAAAACGAAGGAGTTCACGAG
GCTTACCGCGCTGTCGGGCACAATTTTCACTGGGTGAGTGGTGTAAGCAG
TAACCACCCGGCCTGTGCTTATGCGAAGCACTACCTTGTCTTTTGGCGTT
CGCAGCGGGGCCAGTCATCGCAAGGTGTAAGCCACTGCGCAAGAGACCGA
CAGCGTCTGCACTCGGCCGGGAGGCACAAAGCAGTGAACAGAGCAGTGAC
TGCTGCCGACGCTGTTTTTGCAGAGACAGCTGGCCGGACGTGCGAATGCC
GTGCTACGTTTTCAAACACGTCCAACCCCAATCATTTCTCACAGCAAATT
CGATCGCACGTTTTTCGACCTTTGTCGCCGGGCGCGAGGTACAGTCTAAA
ACACCGGTCAGTTTTTACTGCACAGCTATCATAAGCGTATTCTCCAGACA
AATATAGAAATTCAGCGATAATCTGGTGTTCAACTACTGCTGTGTGTAGC
GCAGGCAGTCCAAGTGCCTGGTGTCTGTGCCTCTCTCCTCTCATCGTTCC
TCGTACGACTCCCACTCTGGCTTGCAACCGGGGGTGGGGTAAGGGGTGCT
CAGCTCCATGTGAACAGCAGGACGCACACGGTCGACCCAACAACTACAAC
TGACGCCTGTTTTCGACCGGCAGGTTCTTCTGCACCTATCAAGGGATGAA
GTACGGGGCGAAGCTGGCGCGAAAAGAGGACGATTTCTGGAACGTGCTAA
TCGCTTCGGTCGGGTCCTTCGCCCCCATGCTGGCGGTGCCGGCAATGCGC
TCGCGGTATCCCTACGCCGCGATCCTCATTGCGATGGACACACTCAACAA
CCACGTTTTGTAGAAAAATGGCTTTGTAAGGGAAGGCACGGTTGTTGTTA
CGTAGACGTAGACAGACGTGGTCTGCGGAGGGGTGACGGACGTTTTTTTT
TTCGAAAACGGAAGGCACCATATCGCAATCTCGGTCCCTGCGGCCCGCGC
AATACCACAAGTGCGTCGAGCAGATAAAGCCGTGCCGAAGCATGTCTTGG
CGGAGCTGGGCAAAATATAGAGTTGGGGCGAACGTACGATTGTGTCAGGG
GGGTTCATTTAATGAGAGGTTTTTTGTCGTTTAAGCATCTTGGAGCCAGC
GAGTATGGTTCGGAGACTCGTGGGTGGTGTAGGAATAGACGTTTGTTTCA
TTCCTGCGGTTCACCATCATGCTGCGCTCAACATATACATTGAACATGTG
GGTCTGGTGTTGACCCCAAAACCACATGTCATAATCTTGTATGTCCTATT
TCTCCTTGCAATGCGTCGTCTCCGTCCACCCCCGGAGAAACCGCGCCGAC
AAGTCCTCCCCGCCCTCCCATATGCTGCGATAACCCCACGTTATCCCACA
AGAGCGACCGCATTCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig829:16989..19604+

>mRNA_E_fasciculatus_S2_contig829.16436.1 ID=mRNA_E_fasciculatus_S2_contig829.16436.1|Name=mRNA_E_fasciculatus_S2_contig829.16436.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=510bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig829:16989..19604+ (Ectocarpus fasciculatus EfasUO2)
ATGACCGTGAACGTTCCATGGTCGACACTGAGGCCCAATCCACGAGATCA
GCGCGAGAGAGCCGCAGCAGAGTTCCCAGGCGGCGGAGAGGCGCCGCCCT
TGGACAAGGACGGGGAGGCTGAAATCGCATGGGATGTCACGGACTTTGGC
AAACGCATGGCCTTTGGAGGCATTGTCGGGGGCGTCACGGGGATAACGTT
CGGAGCAATGGATGGTCATAGAGCAATCCGCGACGATTCTACGGGGAAGT
TCCCCACCACAGCGCTCAAAACGAAGGAGTTCACGAGGCTTACCGCGCTG
TCGGGCACAATTTTCACTGGGTTCTTCTGCACCTATCAAGGGATGAAGTA
CGGGGCGAAGCTGGCGCGAAAAGAGGACGATTTCTGGAACGTGCTAATCG
CTTCGGTCGGGTCCTTCGCCCCCATGCTGGCGGTGCCGGCAATGCGCTCG
CGGTATCCCTACGCCGCGATCCTCATTGCGATGGACACACTCAACAACCA
CGTTTTGTAG
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