mRNA_E_fasciculatus_S2_contig824.16388.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig824.16388.1
Unique NamemRNA_E_fasciculatus_S2_contig824.16388.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig824.16388.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM61_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.010e-23
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    4 MSMWRGSTADVILQGDHRLDLRDRSLSTQDVTALAKLLSTSSQVSALILYNVRLNS 171
            MSMWRGSTAD ILQGDHR+DLRDRSLSTQDVTALAKLLSTSSQVSALILYNVRLNS
Sbjct:    1 MSMWRGSTADAILQGDHRIDLRDRSLSTQDVTALAKLLSTSSQVSALILYNVRLNS 56
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig824.16388.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Hypothetical1.010e-2396.43leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig824contigE_fasciculatus_S2_contig824:22104..24010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score104.8
Seed ortholog evalue3.3e-20
Seed eggNOG ortholog2880.D7FM61
Model size405
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-16_004940.2
Cds size402
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842484.208951-UTR-E_fasciculatus_S2_contig824:22103..221061696842484.208951-UTR-E_fasciculatus_S2_contig824:22103..22106Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig824 22104..22106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842484.2216737-CDS-E_fasciculatus_S2_contig824:22106..222771696842484.2216737-CDS-E_fasciculatus_S2_contig824:22106..22277Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig824 22107..22277 +
1696842484.2341545-CDS-E_fasciculatus_S2_contig824:22549..226301696842484.2341545-CDS-E_fasciculatus_S2_contig824:22549..22630Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig824 22550..22630 +
1696842484.252244-CDS-E_fasciculatus_S2_contig824:23860..240101696842484.252244-CDS-E_fasciculatus_S2_contig824:23860..24010Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig824 23861..24010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig824.16388.1prot_E_fasciculatus_S2_contig824.16388.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig824 22107..24010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig824.16388.1

>prot_E_fasciculatus_S2_contig824.16388.1 ID=prot_E_fasciculatus_S2_contig824.16388.1|Name=mRNA_E_fasciculatus_S2_contig824.16388.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=134bp
MSMWRGSTADVILQGDHRLDLRDRSLSTQDVTALAKLLSTSSQVSALILY
NVRLNSDDAVLLARALEFNDTLATLNFTHNPIGEVGTAALAQVIKFNTTI
REVSLANTVLNSQACALLSDALIMNRTLESLNLE
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mRNA from alignment at E_fasciculatus_S2_contig824:22104..24010+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig824.16388.1 ID=mRNA_E_fasciculatus_S2_contig824.16388.1|Name=mRNA_E_fasciculatus_S2_contig824.16388.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1907bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig824:22104..24010+ (Ectocarpus fasciculatus EfasUO2)
GCCATGTCAATGTGGCGAGGGTCTACGGCGGATGTCATCCTCCAAGGAGA
CCATAGGCTTGATCTACGAGATAGAAGCCTGTCTACGCAGGACGTCACTG
CCCTTGCAAAGCTGCTTTCCACAAGCAGTCAGGTGTCCGCCCTCATCCTC
TACAACGTGCGCTTGAATTCAGACGTGAGTGCAACTTCCTCGCGGATACG
TATGGTAGAGCCCTCTGCTGCTTGTGCGCAAAGAGTGGGGTCGAAGCGTG
TATGCGAAGCTTCTGCGTTGAAACATGTAATTCCTTGAATCCAAGAGTAT
CTTGCAAGTTGCAGAACCCGTGTGTCGATGTTTTGCAAAAAGTGCCGGGA
TGTACGTGACTTGACTGCTGTCGAGAGGACACTCGGAGGCTCACTTTTTC
ATGCTCGCTTACCTCCGCGTTCAAAATGCGACGTGCGTTGTCTCAGGATG
CTGTATTGCTGGCGAGGGCGCTGGAGTTCAACGACACGCTTGCCACGCTG
AACTTCACGCACAACCCCATCGGCGAGGTACGAGAACAATCTTTTGGCGG
AACGAAATGCAATTGTCCTTCACGACTTCACAACCCAGCAGCAATAAATG
CCTTTGGACTGCAGTTGGTGTACAATCAAACTCGGGGGCGGGGGGATCAC
AGGGAGCGTTTGCCGATGCGTGCTTGTACAGCAGTAGCAGATACGTTATT
CGCCCTTGCTGTTGGCATACCTCTCCCCATTCTCACGTTTTGTGCTATGC
AATGCGCATGTCCTGCTACACGAGATGGCGCACACATGGGTAAATAAATG
CCCCGCATGTTACGGCCGAGATTTGGTTGTTCCGCAGGCTGGCCGACTGC
TGTATGCATACGAGCGACTGCTGTCACGGATTGCTGTCATGCTCCAATCT
CCCGCCGCGGCCCTCCTATCTTGGACGTTGTGCACCCCCCCCCCCTCTGT
CCTCCGCTCTCTCTCTCTCTCTAGATTGGTGTTTTCGAGCGATGCCAGAG
TTAGTATTGTTAACGAGCTTGAGCATGTGTAAAGGATATAATCCAGACAT
TCCAATTCCACTATTTATTTACTCCGTGTAGCTGCGTTTGAGTTCGATGC
TACAATGAAGACGTTGCTCGTGCAGAGTACAGCAGCAAAGGTGCGGACGC
TGCACACTTCTTACACGATCGATAGCTACATAACCCGGAGAGAGGGTAAG
AGGGTGCTACACGCGACCGATCGACACGTGAAAGGAACGAAAACCCTCGC
TCTCGCTCTCGCTCTGGACAAGGATGTTTGTGTTTCCAAAACCACCCTTT
GCGACACTGCTGAAATTTTTCAGCTTCTTGGCCGTGGAGCAATCGGGCTT
TGATTCGGCCACGCACCTGTCTGCGTTCGCCCGCACTAAAGTTTTAGGAT
TGGCAGTGCAAACGCGAGTATCGCGGGGTGAGTAGTACTGCTGCAGCTCG
CGACACCGATGCTCCGTGCTGTGGGTATTCCGCATTGCATGCAGAACACC
GACAGCACGGAGCATCCATCGCACGCCCCGCCGAGCGCTGCCCTGCCAAC
ATGTGTACAAAATTTTGGCGTAGTATCTCAACCATCTTGCCAAACGTATA
CCGTAGGCATGTGTTTGTTTTCGACGGAAAAAAACACCTCGTCACCGACA
CCCCCCTCCCCCCCGAAAATCATCCCCGGCCTTACCCCGTGGCGCACAAA
TCGCCACCGCAATCATACTTCCACAACCTCACACGTCCGTCCCATGATGC
GAAACAGGTGGGCACAGCGGCGTTAGCCCAGGTGATCAAGTTCAACACGA
CGATCCGCGAGGTGAGCCTGGCCAACACGGTCCTCAACTCCCAGGCGTGC
GCCCTCCTGTCCGACGCGCTCATCATGAACCGCACGCTGGAGAGCCTCAA
CCTCGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig824:22104..24010+

>mRNA_E_fasciculatus_S2_contig824.16388.1 ID=mRNA_E_fasciculatus_S2_contig824.16388.1|Name=mRNA_E_fasciculatus_S2_contig824.16388.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=402bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig824:22104..24010+ (Ectocarpus fasciculatus EfasUO2)
ATGTCAATGTGGCGAGGGTCTACGGCGGATGTCATCCTCCAAGGAGACCA
TAGGCTTGATCTACGAGATAGAAGCCTGTCTACGCAGGACGTCACTGCCC
TTGCAAAGCTGCTTTCCACAAGCAGTCAGGTGTCCGCCCTCATCCTCTAC
AACGTGCGCTTGAATTCAGACGATGCTGTATTGCTGGCGAGGGCGCTGGA
GTTCAACGACACGCTTGCCACGCTGAACTTCACGCACAACCCCATCGGCG
AGGTGGGCACAGCGGCGTTAGCCCAGGTGATCAAGTTCAACACGACGATC
CGCGAGGTGAGCCTGGCCAACACGGTCCTCAACTCCCAGGCGTGCGCCCT
CCTGTCCGACGCGCTCATCATGAACCGCACGCTGGAGAGCCTCAACCTCG
AG
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