prot_E_fasciculatus_S2_contig820.16357.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig820.16357.1
Unique Nameprot_E_fasciculatus_S2_contig820.16357.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length163
Homology
BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs. uniprot
Match: D7G8J7_ECTSI (U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J7_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 3.080e-59
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
Query:    2 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGGRGR 96
            LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGGRGR
Sbjct:    2 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGGRGR 96          
BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs. uniprot
Match: A0A7S2E5C6_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E5C6_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.020e-41
Identity = 71/97 (73.20%), Postives = 83/97 (85.57%), Query Frame = 0
Query:    2 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKR--AMGGRGR 96
            LPLSLL+TAQG PMLVELKNGDTYNGRL NCDSWMNI L++VI TSRD D+F K+ E Y+RGNSIKY+ IPE+V+D+VQEEDL +E R  + GGRGR
Sbjct:   16 LPLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLREVICTSRDGDRFWKLPECYIRGNSIKYLRIPEDVIDLVQEEDLKQETRNASRGGRGR 112          
BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs. uniprot
Match: A0A836C9X5_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X5_9STRA)

HSP 1 Score: 143 bits (361), Expect = 9.500e-41
Identity = 70/92 (76.09%), Postives = 80/92 (86.96%), Query Frame = 0
Query:    2 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGG 93
            LPLSLL+TAQ  PMLVELKNGDTYNGRLD CD+WMNIKL+DVI+TSRD D+F K+ EVYVRG SIKY+TIP+EVL+MV EE+  KEKRA  G
Sbjct:    2 LPLSLLRTAQSHPMLVELKNGDTYNGRLDMCDNWMNIKLRDVIWTSRDGDRFWKLPEVYVRGTSIKYMTIPDEVLEMVVEEEEGKEKRAAAG 93          
BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs. uniprot
Match: A0A7S2FS84_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FS84_9STRA)

HSP 1 Score: 139 bits (350), Expect = 7.580e-40
Identity = 66/88 (75.00%), Postives = 77/88 (87.50%), Query Frame = 0
Query:    2 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKR 89
            LPLSLL+TAQG PMLVELKNGDTYNGRL NCDSWMNI L++VI TSRD D+F K+ E Y+RGNSIKY+ IPE+V+D+VQEEDL +E R
Sbjct:   15 LPLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLREVICTSRDGDRFWKLPECYIRGNSIKYLRIPEDVIDLVQEEDLKQESR 102          
BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs. uniprot
Match: H3G5G4_PHYRM (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5G4_PHYRM)

HSP 1 Score: 137 bits (346), Expect = 4.560e-39
Identity = 65/96 (67.71%), Postives = 81/96 (84.38%), Query Frame = 0
Query:    2 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSK-EKRAMGGRGR 96
            LPLSLLKTAQG PMLVELKNGDTYNG L NCD+WMN+ L++VI TS+D D+F KM E Y+RGN+IKY+ +P E+LDMV EEDL++ +++A  GRGR
Sbjct:    1 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDLNRRDRQANRGRGR 96          
BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs. uniprot
Match: W7TE23_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE23_9STRA)

HSP 1 Score: 137 bits (346), Expect = 6.180e-39
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 0
Query:    2 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEK 88
            LPLSLLKTAQG PMLVELKNGDTYNGRL +CD+WMNI L+DVI TSRD D+F K+ E YVRGNSIKY+ +PEEV+DMV EEDL +E+
Sbjct:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERER 88          
BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs. uniprot
Match: G4ZVC6_PHYSP (U6 snRNA-associated Sm-like protein LSm4 n=7 Tax=Peronosporaceae TaxID=4777 RepID=G4ZVC6_PHYSP)

HSP 1 Score: 138 bits (348), Expect = 6.550e-39
Identity = 66/96 (68.75%), Postives = 80/96 (83.33%), Query Frame = 0
Query:    2 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSK-EKRAMGGRGR 96
            LPLSLLKTAQG PMLVELKNGDTYNG L NCD+WMN+ L++VI TS+D D+F KM E Y+RGN+IKY+ +P E+LDMV EED SK +++A  GRGR
Sbjct:    4 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFSKRDRQANRGRGR 99          
BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs. uniprot
Match: A0A7S2UV99_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV99_9STRA)

HSP 1 Score: 136 bits (343), Expect = 8.000e-39
Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 0
Query:    2 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKE----KRAMGGRG 95
            LPLSLLKTAQG PMLVELKNGDTYNGRL +CDSWMNI L++VI TSRD D+F ++ E Y+RGNSIKY+ IP+EV+DMV EE + KE     R  GGRG
Sbjct:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDSWMNINLREVICTSRDGDRFWRLPECYIRGNSIKYLRIPDEVIDMVNEEAMQKEVRMATRGRGGRG 99          
BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs. uniprot
Match: A0A7S2W2A9_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2A9_9STRA)

HSP 1 Score: 137 bits (346), Expect = 9.450e-39
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 0
Query:    2 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRA--MGGRGR 96
            LPLSLL+TAQG PMLVELKNGDTYNGRL NCDSWMNI LK+VI TSRD D+F K+ E Y+RGNSIKY+ IPEEV+DMV E++   +K +    GRGR
Sbjct:   10 LPLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLKEVICTSRDGDRFWKLAECYIRGNSIKYLRIPEEVIDMVPEDNFKADKHSGRHAGRGR 106          
BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs. uniprot
Match: A0A6A3LNI3_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LNI3_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.120e-37
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 0
Query:    2 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKR 89
            LPLSLLKTAQG PMLVELKNGDTYNG L NCD+WMN+ L++VI TS+D D+F KM E Y+RGN+IKY+ +P E+LDMV EED SK  R
Sbjct:    2 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFSKRDR 89          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8J7_ECTSI3.080e-59100.00U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=E... [more]
A0A7S2E5C6_9STRA1.020e-4173.20U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
A0A836C9X5_9STRA9.500e-4176.09U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=T... [more]
A0A7S2FS84_9STRA7.580e-4075.00U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
H3G5G4_PHYRM4.560e-3967.71U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=P... [more]
W7TE23_9STRA6.180e-3975.86U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=N... [more]
G4ZVC6_PHYSP6.550e-3968.75U6 snRNA-associated Sm-like protein LSm4 n=7 Tax=P... [more]
A0A7S2UV99_9STRA8.000e-3969.39U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
A0A7S2W2A9_9STRA9.450e-3970.10U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=R... [more]
A0A6A3LNI3_9STRA1.120e-3770.45U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=P... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..71
e-value: 3.9E-17
score: 72.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 6..70
e-value: 9.7E-17
score: 60.4
NoneNo IPR availableGENE3D2.30.30.100coord: 1..83
e-value: 2.0E-31
score: 109.3
NoneNo IPR availablePANTHERPTHR23338:SF16U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM4coord: 2..125
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 2..125
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 3..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig820contigE_fasciculatus_S2_contig820:20191..21632 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig820.16357.1mRNA_E_fasciculatus_S2_contig820.16357.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig820 20191..21632 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig820.16357.1 ID=prot_E_fasciculatus_S2_contig820.16357.1|Name=mRNA_E_fasciculatus_S2_contig820.16357.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=163bp
QLPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDA
DKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGGRGRGRGR
GGRDGGRGGGRGRGDGRGRGRGRGGRDGGRGGGGRGRGEGRGGGRGRGEG
RGATGRGDGGGRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR027141LSm4/Sm_D1/D3
IPR001163LSM_dom_euk/arc