mRNA_E_fasciculatus_S2_contig82.16349.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig82.16349.1
Unique NamemRNA_E_fasciculatus_S2_contig82.16349.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig82.16349.1 vs.
Match: SAP (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW5_ECTSI)

HSP 1 Score: 487 bits (1253), Expect = 3.880e-166
Identity = 298/411 (72.51%), Postives = 307/411 (74.70%), Query Frame = 1 
Query:    1 MESLGALTYRELQALAKRHGVKANGSRVDLIHRLSDTHGGDDDTPVEDNTQPGSDESTPGVPDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTLDKPHGACVQPQDDSDPDMSQGKSATQQALVEDTPAEPEPCSGGEVVKRRKSERISATMKVISRCGDTPQKTKVKLPVAGSFERAHQNXXXXXXXXXXXXXXXXXSAPAKTNVPLSKTKASASKAKVFSPTIAGRFERAHQNLFASQASIERYGKTPKKSASTKENVPLSKTKASASKAKVFSPTPVRPVASGSAAKSSVKRGLTVASKPCTLVVQRSTKKPTQVKEFRLSSNQTGKREAFTFKPYTGPLRPIMPANNSSFNIGHAPKNGSNPVRPKGIKATLASGKAQKARKEAHVESSKAQRDRKLAEARFGRA 1233
            MESLG LTYRELQA AKRHGVKANGSRVDLI RLSDTHGGDDDTPVEDNTQPGSDE     PDT XXXXXXXXXXXXXX             L TLDKPHG CVQ Q DSDPD SQ   +  Q LV DTPAEPEPC+G +V +RRKSER+SATMK     G+TPQKTKVKLPVAG                                                      RFERAHQNLFASQASIERYGKTPKKSA  KEN PLSKTKA AS AKVF+PTPVRPV SGSAAKSSVKRGLTVASKPCTLVVQRSTKKPTQVKEFRLSSNQTGKRE FTFKPYTGPLRPI+PANNSSFNIGHAPK GSNPVR KGIKATLASGKAQKARKEAHVESSKAQRDRKLA+ARFGRA
Sbjct:    1 MESLGTLTYRELQAFAKRHGVKANGSRVDLIQRLSDTHGGDDDTPVEDNTQPGSDER----PDTDXXXXXXXXXXXXXXGTTLGVPDTDADNLATLDKPHGTCVQSQHDSDPDKSQQGKSDSQVLVTDTPAEPEPCAGEDVAERRKSERVSATMKETRTTGETPQKTKVKLPVAG------------------------------------------------------RFERAHQNLFASQASIERYGKTPKKSAPAKENAPLSKTKAFASTAKVFAPTPVRPVPSGSAAKSSVKRGLTVASKPCTLVVQRSTKKPTQVKEFRLSSNQTGKRETFTFKPYTGPLRPIVPANNSSFNIGHAPKKGSNPVRAKGIKATLASGKAQKARKEAHVESSKAQRDRKLADARFGRA 353
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BLAST of mRNA_E_fasciculatus_S2_contig82.16349.1 vs.
Match: SAP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M9_9PHAE)

HSP 1 Score: 439 bits (1129), Expect = 2.070e-147
Identity = 283/411 (68.86%), Postives = 297/411 (72.26%), Query Frame = 1 
Query:    1 MESLGALTYRELQALAKRHGVKANGSRVDLIHRLSDTHGGDDDTPVEDNTQPGSDESTPGVPDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTLDKPHGACVQPQDDSDPDMSQGKSATQQALVEDTPAEPEPCSGGEVVKRRKSERISATMKVISRCGDTPQKTKVKLPVAGSFERAHQNXXXXXXXXXXXXXXXXXSAPAKTNVPLSKTKASASKAKVFSPTIAGRFERAHQNLFASQASIERYGKTPKKSASTKENVPLSKTKASASKAKVFSPTPVRPVASGSAAKSSVKRGLTVASKPCTLVVQRSTKKPTQVKEFRLSSNQTGKREAFTFKPYTGPLRPIMPANNSSFNIGHAPKNGSNPVRPKGIKATLASGKAQKARKEAHVESSKAQRDRKLAEARFGRA 1233
            MESLG+LTYRELQA AKRHGVKANGSRVDLI RL DTHGGDDDTPVEDNTQPGSD+     PDTXXXXXXXXXXXXXXX             LVT D+PHGA VQ Q+DSD D SQ   +  QALV DTPAEP+P + G+V +R KS    AT+K     G TPQKTKVKLPVAG                                                      RFERAHQ+LFASQASIERYGKTPKKSA  K NVPLSKTKASA KAKVF+ TPVRPV SGS AKSSVKRGLTVAS PCTLVVQRSTKKPTQVKEFRLSSNQTGKRE FTFKPYTGPLRPI+ ANN SFNIGHAPK GSNPVRPKGIKATLASGK QKAR+EAHVESSKAQRDRKLAEAR GRA
Sbjct:    1 MESLGSLTYRELQAFAKRHGVKANGSRVDLIQRLCDTHGGDDDTPVEDNTQPGSDDR----PDTXXXXXXXXXXXXXXXGTTLGVSDTDADNLVTRDRPHGAFVQSQNDSDLDKSQQGKSDSQALVTDTPAEPQPRAVGDVAERCKSGNY-ATIKETRTTGGTPQKTKVKLPVAG------------------------------------------------------RFERAHQSLFASQASIERYGKTPKKSAPAKGNVPLSKTKASAPKAKVFASTPVRPVDSGSGAKSSVKRGLTVASMPCTLVVQRSTKKPTQVKEFRLSSNQTGKRETFTFKPYTGPLRPIVSANNYSFNIGHAPKKGSNPVRPKGIKATLASGKGQKARREAHVESSKAQRDRKLAEARCGRA 352
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig82.16349.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
SAP3.880e-16672.51domain-containing protein n=1 Tax=Ectocarpus silic... [more]
SAP2.070e-14768.86domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig82contigE_fasciculatus_S2_contig82:3753..7456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1863
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-17_001610.1
Cds size1236
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig82.16349.1prot_E_fasciculatus_S2_contig82.16349.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig82 4380..7456 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842480.861329-UTR-E_fasciculatus_S2_contig82:3752..43791696842480.861329-UTR-E_fasciculatus_S2_contig82:3752..4379Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig82 3753..4379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842480.8766346-CDS-E_fasciculatus_S2_contig82:4379..45641696842480.8766346-CDS-E_fasciculatus_S2_contig82:4379..4564Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig82 4380..4564 -
1696842480.896968-CDS-E_fasciculatus_S2_contig82:4821..49151696842480.896968-CDS-E_fasciculatus_S2_contig82:4821..4915Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig82 4822..4915 -
1696842480.9091034-CDS-E_fasciculatus_S2_contig82:5232..54231696842480.9091034-CDS-E_fasciculatus_S2_contig82:5232..5423Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig82 5233..5423 -
1696842480.9223714-CDS-E_fasciculatus_S2_contig82:5567..57291696842480.9223714-CDS-E_fasciculatus_S2_contig82:5567..5729Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig82 5568..5729 -
1696842480.9325643-CDS-E_fasciculatus_S2_contig82:5871..59921696842480.9325643-CDS-E_fasciculatus_S2_contig82:5871..5992Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig82 5872..5992 -
1696842480.9441473-CDS-E_fasciculatus_S2_contig82:6788..71691696842480.9441473-CDS-E_fasciculatus_S2_contig82:6788..7169Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig82 6789..7169 -
1696842480.9532723-CDS-E_fasciculatus_S2_contig82:7354..74561696842480.9532723-CDS-E_fasciculatus_S2_contig82:7354..7456Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig82 7355..7456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig82.16349.1

>prot_E_fasciculatus_S2_contig82.16349.1 ID=prot_E_fasciculatus_S2_contig82.16349.1|Name=mRNA_E_fasciculatus_S2_contig82.16349.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=412bp
MESLGALTYRELQALAKRHGVKANGSRVDLIHRLSDTHGGDDDTPVEDNT
QPGSDESTPGVPDTDDDTPVEDATKPGSDGTTLGVSDTDADTLVTLDKPH
GACVQPQDDSDPDMSQGKSATQQALVEDTPAEPEPCSGGEVVKRRKSERI
SATMKVISRCGDTPQKTKVKLPVAGSFERAHQNLSASQAPMERCGKTPKK
SAPAKTNVPLSKTKASASKAKVFSPTIAGRFERAHQNLFASQASIERYGK
TPKKSASTKENVPLSKTKASASKAKVFSPTPVRPVASGSAAKSSVKRGLT
VASKPCTLVVQRSTKKPTQVKEFRLSSNQTGKREAFTFKPYTGPLRPIMP
ANNSSFNIGHAPKNGSNPVRPKGIKATLASGKAQKARKEAHVESSKAQRD
RKLAEARFGRA*
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mRNA from alignment at E_fasciculatus_S2_contig82:3753..7456-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig82.16349.1 ID=mRNA_E_fasciculatus_S2_contig82.16349.1|Name=mRNA_E_fasciculatus_S2_contig82.16349.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3704bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig82:3753..7456- (Ectocarpus fasciculatus EfasUO2)
ATGGAGTCGCTTGGGGCACTCACCTATCGAGAACTGCAGGCGTTGGCCAA
GCGTCATGGTGTGAAAGCGAACGGAAGTAGGGTCGATCTGATACATAGAC
TGGTGAGAGATATGGTATGGTGCGCATGATGTTGTCTGGCCGATTAGCAG
TTTTTTCGTACAAGCACTCGATCGGAGGACTCGATAATCTACCTGTGCTT
GGTGAGTGCGACATGTCCCAGTACCTGATGTTTTTGGGTTGTCCAACCCC
GGCTGCTTTCATTTATGTGCCCTTCTTCGAGCTTTAGTCCGACACACACG
GAGGTGACGACGACACGCCGGTTGAAGACAACACCCAACCCGGCAGCGAT
GAAAGCACTCCAGGCGTACCCGACACAGACGACGACACACCAGTTGAAGA
CGCCACCAAACCCGGAAGCGATGGAACAACTCTAGGCGTGTCCGACACGG
ACGCCGACACGCTAGTCACCCTTGACAAGCCTCATGGCGCATGTGTCCAG
CCTCAAGATGACTCCGACCCCGACATGTCCCAGGGCAAGAGCGCCACGCA
GCAGGCTCTTGTCGAGGACACGCCTGCCGAGCCAGAACCATGCTCTGGGG
GAGAAGTGGTGAAGAGGCGCAAGAGTGAGAGAATCTCCGCCACCATGAAG
GTAATCTCGCGTTGCGGTGTGGTGAGAAAAACAGCAGCTGAGCAGATGAG
CGACTTTTTTTCCCGGCACCAATGTTGTGTGTGTGTTTTTGTTTGTGCCA
GGGAGTTTCTATCTGACCAGTACTACTGCTGTCCCGGCAATCTTGTTCGA
GCGAAGCGAGATTTCTAATCTCGCCTGAGGTCTCACCGCAATAACAGGCT
CCATGCAGGAAAAAAAGGTCTACACCCGCGTGTCTGTACGCTTAATCTAG
GTTTTAGAGTACATGACTTGATTTCAGACTACAGGGGTCACAGGATGCAA
GTTTTTTTTTTCGGACAACACAGCAGCGGATTGCAGCAGAGACCACACGC
ACTGCGGACGACACAACACGGCAGACAACACACGCACAGCACACAGCGTA
CGCATAACGGGTGACACACACGCACAGCGGGCGACAGCATCTGGGCCCGA
TGACGTTGGTGTCTCTGTGGTGTGATGCTGCTGTTGCTGTCGCGAATGTT
TTGTTTTGTTGACCTGCCGTGTTCAACTGACTGCCAGCAAACGATGGGCA
CATGATGAGCACAGCACAACAACATGTGTTCGGTTTCTGCTGACCTCCCG
CCTGAGGAAATATGGTCCGGCATGCATTTGGGTTTCATGTTGAGACGCTC
AAAGAAGTTAGGCGCTTTATTTGCCAGCTTCGCACCCATGCTGTATGACA
CCGTTGGAAAAAGTCTCTTGTAAGGGGGCAGGAATGGCTATCCCGTTTGT
GCCCGATTTGTTGAAGCCTACCTAAGAGTACTGTGGATTGATTAACTTGC
CGCTCATGTCACAGGATACACCCCAGAAGACTAAGGTCAAACTGCCAGTT
GCAGGCAGCTTCGAGCGGGCGCACCAGAATCTCTCTGCGAGCCAGGCACC
AATGGAACGCTGTGGAAAGACTCCGAAGAAGTCAGGTATGCGAACAATCA
GGAGTTTCTCCAGGTAAAGGTTTCTTCGCCCCCGTCCTCGTCTTTCTCTG
AAGAAACATGAGCTTGTTTCGGGTCCCCTGGTCAGCCGACATCGCAAATA
CTTCCGCGCTACTCATTCCATACGCAGCACCTGCCAAGACAAACGTTCCT
CTGTCCAAGACCAAGGCATCTGCATCCAAGGCCAAAGTGTTTTCGCCGAC
AATTGCAGGCAGGTTCGAGCGGGCGCACCAGAACCTCTTTGCAAGCCAGG
CATCAATAGAACGCTATGGAAAGACTCCAAAGAAGTCAGGTATGCCCGCT
TTCATGAGTCTTTCCAAGTAAGCTGCTGCTTCACGTCAGCTCCCGCCATT
CTCTGAAGAAATTTGAAGTGTGTTTTGGTTCCCATGGTCAGATGACATCG
CACACACTTCCGCGCTACTCATTCCATACGCAGCATCTACCAAGGAAAAC
GTTCCTCTGTCCAAGACCAAGGCATCTGCATCCAAGGCCAAAGTGTTTTC
GCCAACACCTGTTCGCCCTGTCGCTTCCGGGTCTGCCGCCAAGTCAAGCG
TCAAGCGGGGCCTGACTGTGGCCAGCAAGCCGTGCACACTGGTTGTTCAG
CGCAGCACAAAAAAGCCGACGCAGGTGGGAGCTATTGTGTCTCGCAACCA
GTGACACCCTCAACAAGGGCATGTCCGCAGTTCCTTTGACAGTGTTTGTT
GTTGTTGTGGTAGTGGTCGTTGTTTTTATTATTCTCTACAAACGTTTTTG
CCGACCTTGTCAGTGAAAAGCAGACTGTTTGCGCGGAAAGAAATCTTGTA
AAATTTGTGGGAGATGCCGATGTTGTCTATCGCTTTTCATTATACGATGA
GATTAGATGGTCCACCTCACATAGGTGAGGTCGGTCTGTTTCATCGCACA
CCGAAAAACGACCAGTCTCTAAATGACTGTCATTTCTACAGGTGAAGGAA
TTCCGCCTGAGCTCCAACCAGACCGGTAAACGGGAAGCGTTCACCTTTAA
ACCCTACACTGGACCATTGCGCCCCATCATGCCAGGTGGGTTATCTTGTG
AATGCAAATTTCGTTCGTGGCTGGTCTCCTTTGATTTTTGGTACCACCGT
GATCCGAGGTGCGACCGTACTAAAAAAATATGCAGATTTTCTTTTTCCTA
TGGCCTCCACCGGATTTTATGAGCTGTCTAAATGTCTCTGTACTCGTTGG
AAGATCGATATTGATTGATTGTCGCATCCTTGTCCCAAACTTGTTTCTAT
TTTTCAATCTATCTCCACCTTCGTGTCGCTCCGCACTTCCAGCAAACAAC
TCCAGCTTTAACATTGGGCATGCACCCAAGAATGGGTCCAACCCTGTCCG
ACCGAAGGGAATTAAAGCAACGCTGGCGAGTGGCAAGGCACAGAAGGCCC
GGAAAGAAGCTCACGTCGAGTCTAGCAAGGCTCAACGAGACAGGAAATTG
GCGGAGGCACGGTTTGGTCGTGCTTAAGTCGTTGCTGGCCATGATGGAGT
CCCCTAAACTACACAAGAGAACGTACGCGTGCTCTTGGAATCGTACACGC
TCGTGCGTAGTCCAGAAATGCATCAGTGCGTGCTTTCTGTCCAGCCATGA
GCAGCGAGTAGGGATCTTCTAGCCGAAATGGTTGTTGTATCTAAAATTTA
GCCTTTGTTTGCAGGAATGGAGCCATCTGTGGAGCAATGTCCTAAATATT
GAGTCAAAACAATATTGTATGCATAGAGTAGAACGTGTTTATTTTTTCAT
TTCTGCTTGTTCCTTCGTCGGGACATGTCCTGAACACATGATATACACGG
TGACCCGTCGAGAATCTGGATTGGATATTGAGATTTCTCACCGACGCAGA
GCTGCACCGTAAGAGTAATCGTCTTTCAGTTTGCTCCGTGTTCATGATAA
GAACTTCCTTGGTTAGCTAGCGGCATGTCGAGATGGTGATAGGCGGATGT
ATTCTTTGACCGTGCCTCCTTTACGTGTGGGGTACACAGAGATGAAAAGT
CACCACGTAGATCGTAACGTATTGCATTCACACCGTACAATGTTGTGTTT
ATGACTTGCGATGAACTAATCCGCACAACACAAAAGTGCACGCTCTTCTT
CATC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig82:3753..7456-

>mRNA_E_fasciculatus_S2_contig82.16349.1 ID=mRNA_E_fasciculatus_S2_contig82.16349.1|Name=mRNA_E_fasciculatus_S2_contig82.16349.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1236bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig82:3753..7456- (Ectocarpus fasciculatus EfasUO2)
ATGGAGTCGCTTGGGGCACTCACCTATCGAGAACTGCAGGCGTTGGCCAA
GCGTCATGGTGTGAAAGCGAACGGAAGTAGGGTCGATCTGATACATAGAC
TGTCCGACACACACGGAGGTGACGACGACACGCCGGTTGAAGACAACACC
CAACCCGGCAGCGATGAAAGCACTCCAGGCGTACCCGACACAGACGACGA
CACACCAGTTGAAGACGCCACCAAACCCGGAAGCGATGGAACAACTCTAG
GCGTGTCCGACACGGACGCCGACACGCTAGTCACCCTTGACAAGCCTCAT
GGCGCATGTGTCCAGCCTCAAGATGACTCCGACCCCGACATGTCCCAGGG
CAAGAGCGCCACGCAGCAGGCTCTTGTCGAGGACACGCCTGCCGAGCCAG
AACCATGCTCTGGGGGAGAAGTGGTGAAGAGGCGCAAGAGTGAGAGAATC
TCCGCCACCATGAAGGTAATCTCGCGTTGCGGTGATACACCCCAGAAGAC
TAAGGTCAAACTGCCAGTTGCAGGCAGCTTCGAGCGGGCGCACCAGAATC
TCTCTGCGAGCCAGGCACCAATGGAACGCTGTGGAAAGACTCCGAAGAAG
TCAGCACCTGCCAAGACAAACGTTCCTCTGTCCAAGACCAAGGCATCTGC
ATCCAAGGCCAAAGTGTTTTCGCCGACAATTGCAGGCAGGTTCGAGCGGG
CGCACCAGAACCTCTTTGCAAGCCAGGCATCAATAGAACGCTATGGAAAG
ACTCCAAAGAAGTCAGCATCTACCAAGGAAAACGTTCCTCTGTCCAAGAC
CAAGGCATCTGCATCCAAGGCCAAAGTGTTTTCGCCAACACCTGTTCGCC
CTGTCGCTTCCGGGTCTGCCGCCAAGTCAAGCGTCAAGCGGGGCCTGACT
GTGGCCAGCAAGCCGTGCACACTGGTTGTTCAGCGCAGCACAAAAAAGCC
GACGCAGGTGAAGGAATTCCGCCTGAGCTCCAACCAGACCGGTAAACGGG
AAGCGTTCACCTTTAAACCCTACACTGGACCATTGCGCCCCATCATGCCA
GCAAACAACTCCAGCTTTAACATTGGGCATGCACCCAAGAATGGGTCCAA
CCCTGTCCGACCGAAGGGAATTAAAGCAACGCTGGCGAGTGGCAAGGCAC
AGAAGGCCCGGAAAGAAGCTCACGTCGAGTCTAGCAAGGCTCAACGAGAC
AGGAAATTGGCGGAGGCACGGTTTGGTCGTGCTTAA
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