mRNA_E_fasciculatus_S2_contig8188.16335.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8188.16335.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 142 bits (359), Expect = 2.950e-37 Identity = 73/101 (72.28%), Postives = 85/101 (84.16%), Query Frame = 1
Query: 115 PDGWGAAVTNSDTTKLAELVLVWSGSKPERALSVLRKCVSLMEKEVAFSAP-ASPVSSPATTPGPSRNSCLKAISVALNETCDGKRWYTSTKELQLASLEL 414
PD WG AV D TKLAELVLVWSGS+PE ALS+LR+CV L+E+E AFS P +SP+ SP+ T GP+R+SCLK ++VALNETCDGK WYTSTKELQLASLEL
Sbjct: 67 PDKWGLAVATGDATKLAELVLVWSGSRPEAALSLLRECVLLLEEEAAFSVPDSSPLQSPSCTLGPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLEL 167
BLAST of mRNA_E_fasciculatus_S2_contig8188.16335.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI) HSP 1 Score: 121 bits (304), Expect = 6.130e-31 Identity = 67/95 (70.53%), Postives = 76/95 (80.00%), Query Frame = 1
Query: 127 GAAVTNSDTTKLAELVLVWSGSKPERALSVLRKCVSLMEKEVAFSAP-ASPVSSPATTPGPSRNSCLKAISVALNETCDGKRWYTSTKELQLASL 408
G+AV + TKLAELVLVWS SKPERALS+ R CVSL+EKE A SA +SP+ +T PGP R+SCL AI VAL+ETCDGK WYTSTKELQLASL
Sbjct: 71 GSAVASGAATKLAELVLVWSVSKPERALSIARTCVSLLEKEDAHSASGSSPLXXXSTAPGPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASL 165
BLAST of mRNA_E_fasciculatus_S2_contig8188.16335.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 120 bits (300), Expect = 1.090e-29 Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 1
Query: 154 TKLAELVLVWSGSKPERALSVLRKCVSLMEKEVAFSAPASP-VSSPATTPGPSRNSCLKAISVALNETCDGKRWYTSTKELQLASLE 411
T+LA+LVLVWSGS+PE ALS+L+ CVSL+EKE AFSAPA P V T PGPSR+SCL A+ +ALNETC+G+ WYTSTKELQLASLE
Sbjct: 57 TRLAQLVLVWSGSEPEPALSILKDCVSLLEKEFAFSAPAFPAVPLLPTMPGPSRSSCLNALVIALNETCNGESWYTSTKELQLASLE 143
BLAST of mRNA_E_fasciculatus_S2_contig8188.16335.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH80_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 2.810e-16 Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 1
Query: 115 PDGWGAAVTNSDTTKLAELVLVWSGSKPERALSVLRKCVSLMEKEVAFSAP-ASPVSSPATTPG 303
PD WG AV + D TKLAELVL+WSG KPERALSV+R CVS++EKEVA S P +SP+ + TT G
Sbjct: 12 PDEWGPAVASGDATKLAELVLLWSGLKPERALSVIRDCVSVLEKEVALSTPGSSPLRATPTTLG 75
BLAST of mRNA_E_fasciculatus_S2_contig8188.16335.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA8_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 2.070e-14 Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 1
Query: 115 PDGWGAAVTNSDTTKLAELVLVWSGSKPERALSVLRKCVSLMEKEVAFSAP-ASPVSSPATTPGPSRNSCLKAI 333
PD WG+AV + D T LAELVL+W G P ALS+LR+CV+++EKEVA SAP +SP+ SP T+ G + N +K +
Sbjct: 12 PDAWGSAVASGDATGLAELVLLWCGVLPHPALSILRRCVAVLEKEVALSAPTSSPLPSPQTSRGRNFNQPIKDV 85
BLAST of mRNA_E_fasciculatus_S2_contig8188.16335.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 2.380e-9 Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1
Query: 301 GPSRNSCLKAISVALNETCDGKRWYTSTKELQLASLE 411
GP+R CL+A+ VALNETCDGK WYTSTKELQLASL+
Sbjct: 45 GPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLD 81
BLAST of mRNA_E_fasciculatus_S2_contig8188.16335.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 8.950e-9 Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1
Query: 295 TPGPSRNSCLKAISVALNETCDGKRWYTSTKELQLASLE 411
+PGP+ N+CL AI VAL ET DGK WYTSTKELQLASLE
Sbjct: 28 SPGPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLE 66
BLAST of mRNA_E_fasciculatus_S2_contig8188.16335.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 1.010e-8 Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 1
Query: 301 GPSRNSCLKAISVALNETCDGKRWYTSTKELQLASLE 411
GP+R+SCL AI VALNET DGK WYTSTKE QLASLE
Sbjct: 6 GPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLE 42
BLAST of mRNA_E_fasciculatus_S2_contig8188.16335.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 56.2 bits (134), Expect = 7.390e-7 Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 1
Query: 301 GPSRNSCLKAISVALNETCDGKRWYTSTKELQLASLE 411
G + N CL ++ VALNETCDG WYTSTKELQ ASLE
Sbjct: 8 GLTHNPCLSSLIVALNETCDGTSWYTSTKELQRASLE 44
BLAST of mRNA_E_fasciculatus_S2_contig8188.16335.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM41_9PHAE) HSP 1 Score: 50.8 bits (120), Expect = 4.560e-6 Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1
Query: 313 NSCLKAISVALNETCDGKRWYTSTKELQLASL 408
N CL A VALN++CDGK+WYTS +LQLASL
Sbjct: 7 NRCLDAFIVALNQSCDGKKWYTSRADLQLASL 38 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8188.16335.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8188.16335.1 >prot_E_fasciculatus_S2_contig8188.16335.1 ID=prot_E_fasciculatus_S2_contig8188.16335.1|Name=mRNA_E_fasciculatus_S2_contig8188.16335.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=138bp GSKSERALSILKDCVSVLEREVVVSVPASSPLQSPPTTPDGWGAAVTNSDback to top mRNA from alignment at E_fasciculatus_S2_contig8188:1137..6901+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8188.16335.1 ID=mRNA_E_fasciculatus_S2_contig8188.16335.1|Name=mRNA_E_fasciculatus_S2_contig8188.16335.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5765bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8188:1137..6901+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8188:1137..6901+ >mRNA_E_fasciculatus_S2_contig8188.16335.1 ID=mRNA_E_fasciculatus_S2_contig8188.16335.1|Name=mRNA_E_fasciculatus_S2_contig8188.16335.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=414bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8188:1137..6901+ (Ectocarpus fasciculatus EfasUO2)back to top |