mRNA_E_fasciculatus_S2_contig8111.16271.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8111.16271.1
Unique NamemRNA_E_fasciculatus_S2_contig8111.16271.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8111.16271.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI8_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 6.740e-57
Identity = 201/338 (59.47%), Postives = 212/338 (62.72%), Query Frame = 1 
Query:  124 LGLSRISEXXXXXXXXXXXXXXXXXSSGDGREDGEDQATSEENMSSSLVLDDNDSGGEEEGLDGYSVSRAGWLRPRTPAGATVSGGXXXXXXXXAGDTSRQSLGSAWGGCSTIKRRPGDDDYSGAAAGWSAARVRGAVSVGLGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVDGVVIEGSMHPPGAPGIGGDSRRGNGRKWSSSDXXXXXXXXXGLFAVGEASAARYVPAATISCDGVTPLPAGRGGGPREAGSRRGSFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----PHSSSLSASSPFPNLLDGADDSASS 1125
            LGLSRISE                 SSGDGRED   QA S+ N+SSSL+ DDNDS  + EGLDGYSVSRAGWLRPRTPAGAT   GXXXXXXX    +SRQSLGS WGGCSTIKRRPGDDD     AGWS+AR RGA++ GLGH                    XXXXXXXX G  DG   EGSM+P    G+GG SR  NGRK   S XXXXXXXXX  FAVGEAS AR V AAT  CDGVTPLPAGRGGGPREAG+      XXXXXXXXX         XXX                  XXXXXX    PHS SLSASSPF NLLDG DDS SS
Sbjct:   43 LGLSRISEGGGGEISRSTERIRGS-SSGDGRED---QAASD-NVSSSLMFDDNDSS-DGEGLDGYSVSRAGWLRPRTPAGATNGRGXXXXXXX----SSRQSLGSTWGGCSTIKRRPGDDDSG---AGWSSARRRGALNTGLGHHHQDVEGEDSTRGVVGAERSXXXXXXXXSG-TDGFATEGSMYP--GAGVGG-SRWSNGRK---SXXXXXXXXXXXSFAVGEASVARPV-AATFGCDGVTPLPAGRGGGPREAGAXXXXXXXXXXXXXXXSAGREGRAGXXXGEGVSGGRADYHSLCFSSXXXXXXXXXXPHSGSLSASSPFLNLLDGGDDSTSS 359
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BLAST of mRNA_E_fasciculatus_S2_contig8111.16271.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK5_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 3.910e-32
Identity = 180/316 (56.96%), Postives = 188/316 (59.49%), Query Frame = 1 
Query:  199 SSGDGREDGEDQATSEENMSSSLVLDDNDSGGEEEGLDGYSVSRAGWLRPRTPAGATVSGGXXXXXXXXAGDTSRQSLGSAWGGCSTIKRRPGDDDYSGAAAGWSAARVRGAVSVGLGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVDGVVIEGSMHPPGAPGIGGDSRRGNGRKWSSSDXXXXXXXXXGLFAVGEASAARYVPAATISCDGVTPLPAGRGGGPREAGSRRGSFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP----HSSSLSASSPFPNLLDGA-DDSASSTS 1131
            SSG GRED      + +N+SSSL+ D NDS  + EGLDGYSVSRAGWLRPRTPAGAT   GXXXXXXXX   +SRQS GS WGGCSTIKRRP                           XXXXXXXXXXXXXXXXXXXXXXXXXXXX    DG   E SMHP    G+G DSR GNGRK     XXX        +A GEAS AR V AA I CDGVTPLPA RGGGPRE G       XXXXXXXXX                              XXXXXX     HSSSLSASSPFPNLLDG  DDS SSTS
Sbjct:  619 SSGVGRED----HAASDNVSSSLMFDGNDSS-DGEGLDGYSVSRAGWLRPRTPAGATAGRGXXXXXXXXXXXSSRQSFGSTWGGCSTIKRRPXXXXXX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVADGFATERSMHP--GAGVG-DSRWGNGRKSXXXXXXXP-------YAAGEASVARSV-AAAIGCDGVTPLPAERGGGPREDGXXXXXXXXXXXXXXXXSAGRGGRGASAVGERVPGGRADYHSLCFSSXXXXXXXXXXXHSSSLSASSPFPNLLDGGVDDSTSSTS 914
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8111.16271.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.740e-5759.47protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.910e-3256.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8111contigE_fasciculatus_S2_contig8111:2599..3732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1134
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_001570.1
Cds size1134
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842472.6538672-CDS-E_fasciculatus_S2_contig8111:2598..37321696842472.6538672-CDS-E_fasciculatus_S2_contig8111:2598..3732Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8111 2599..3732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8111.16271.1prot_E_fasciculatus_S2_contig8111.16271.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8111 2599..3732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8111.16271.1

>prot_E_fasciculatus_S2_contig8111.16271.1 ID=prot_E_fasciculatus_S2_contig8111.16271.1|Name=mRNA_E_fasciculatus_S2_contig8111.16271.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=378bp
MSAAAAAGEGSSGGAAMTTASLAASLRRKSTAAASSGGGGGLGLSRISEG
GGGGGDVSRSTERSAGSSGDGREDGEDQATSEENMSSSLVLDDNDSGGEE
EGLDGYSVSRAGWLRPRTPAGATVSGGGGGGGRGGAGDTSRQSLGSAWGG
CSTIKRRPGDDDYSGAAAGWSAARVRGAVSVGLGHHHHHQEVEGEGAAAA
AGGGGGGGAEKSSGGGVDGVVIEGSMHPPGAPGIGGDSRRGNGRKWSSSD
GGGSGSGGGGLFAVGEASAARYVPAATISCDGVTPLPAGRGGGPREAGSR
RGSFSSSYGGGGGSSAGRGGGGSGGRADYHSLCFSSSSSSSGNTTAGNTT
PHSSSLSASSPFPNLLDGADDSASSTS*
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mRNA from alignment at E_fasciculatus_S2_contig8111:2599..3732+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8111.16271.1 ID=mRNA_E_fasciculatus_S2_contig8111.16271.1|Name=mRNA_E_fasciculatus_S2_contig8111.16271.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1134bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8111:2599..3732+ (Ectocarpus fasciculatus EfasUO2)
ATGTCGGCTGCAGCGGCGGCGGGGGAGGGGAGCTCCGGCGGTGCGGCGAT
GACGACGGCTTCGCTGGCTGCGTCCCTTAGAAGGAAGAGCACCGCGGCGG
CGTCCAGCGGCGGCGGCGGCGGCCTAGGCCTGTCGCGCATATCCGAGGGG
GGGGGCGGCGGGGGTGACGTTTCTCGCTCCACAGAGAGGAGTGCCGGCAG
CAGCGGTGACGGTCGGGAAGACGGAGAAGACCAAGCCACGAGCGAAGAAA
ACATGTCCTCGTCCTTGGTGCTCGATGACAACGATAGCGGCGGTGAGGAG
GAAGGCTTGGACGGGTACTCGGTGTCGCGAGCGGGGTGGCTGAGGCCGCG
GACGCCGGCAGGAGCCACCGTCTCCGGTGGCGGCGGCGGCGGCGGCCGCG
GCGGCGCGGGGGACACGTCCAGGCAGTCGCTGGGGAGCGCGTGGGGCGGG
TGCTCGACCATCAAGCGGAGACCGGGGGACGATGACTACTCCGGGGCGGC
GGCTGGTTGGAGCGCCGCTCGCGTTCGCGGGGCGGTAAGCGTGGGGCTTG
GACACCACCACCACCACCAAGAGGTGGAGGGCGAAGGCGCCGCCGCCGCC
GCCGGAGGAGGAGGAGGAGGAGGAGCTGAGAAGAGCAGCGGCGGCGGTGT
GGACGGCGTGGTGATAGAGGGATCGATGCATCCACCGGGTGCCCCCGGTA
TCGGTGGTGACAGCAGGCGGGGCAACGGGAGGAAATGGTCTTCCTCAGAC
GGCGGCGGCAGCGGCAGCGGCGGCGGCGGGCTGTTTGCCGTGGGCGAGGC
TTCCGCGGCCAGATACGTGCCTGCTGCTACTATCAGCTGCGACGGCGTCA
CTCCGCTGCCTGCCGGGCGAGGGGGGGGACCCCGGGAAGCCGGTTCAAGA
AGAGGTAGTTTTAGCTCCTCCTACGGCGGCGGGGGCGGGAGTTCGGCCGG
GCGCGGGGGGGGCGGGTCGGGAGGGCGCGCTGACTACCACTCGCTCTGCT
TCTCGAGCTCGTCTTCTAGCAGTGGCAACACCACGGCCGGCAACACCACG
CCGCATAGCAGTTCGCTGTCGGCGTCGTCGCCTTTCCCGAACCTGCTGGA
CGGGGCCGACGACTCGGCTTCCTCCACGTCTTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8111:2599..3732+

>mRNA_E_fasciculatus_S2_contig8111.16271.1 ID=mRNA_E_fasciculatus_S2_contig8111.16271.1|Name=mRNA_E_fasciculatus_S2_contig8111.16271.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1134bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8111:2599..3732+ (Ectocarpus fasciculatus EfasUO2)
ATGTCGGCTGCAGCGGCGGCGGGGGAGGGGAGCTCCGGCGGTGCGGCGAT
GACGACGGCTTCGCTGGCTGCGTCCCTTAGAAGGAAGAGCACCGCGGCGG
CGTCCAGCGGCGGCGGCGGCGGCCTAGGCCTGTCGCGCATATCCGAGGGG
GGGGGCGGCGGGGGTGACGTTTCTCGCTCCACAGAGAGGAGTGCCGGCAG
CAGCGGTGACGGTCGGGAAGACGGAGAAGACCAAGCCACGAGCGAAGAAA
ACATGTCCTCGTCCTTGGTGCTCGATGACAACGATAGCGGCGGTGAGGAG
GAAGGCTTGGACGGGTACTCGGTGTCGCGAGCGGGGTGGCTGAGGCCGCG
GACGCCGGCAGGAGCCACCGTCTCCGGTGGCGGCGGCGGCGGCGGCCGCG
GCGGCGCGGGGGACACGTCCAGGCAGTCGCTGGGGAGCGCGTGGGGCGGG
TGCTCGACCATCAAGCGGAGACCGGGGGACGATGACTACTCCGGGGCGGC
GGCTGGTTGGAGCGCCGCTCGCGTTCGCGGGGCGGTAAGCGTGGGGCTTG
GACACCACCACCACCACCAAGAGGTGGAGGGCGAAGGCGCCGCCGCCGCC
GCCGGAGGAGGAGGAGGAGGAGGAGCTGAGAAGAGCAGCGGCGGCGGTGT
GGACGGCGTGGTGATAGAGGGATCGATGCATCCACCGGGTGCCCCCGGTA
TCGGTGGTGACAGCAGGCGGGGCAACGGGAGGAAATGGTCTTCCTCAGAC
GGCGGCGGCAGCGGCAGCGGCGGCGGCGGGCTGTTTGCCGTGGGCGAGGC
TTCCGCGGCCAGATACGTGCCTGCTGCTACTATCAGCTGCGACGGCGTCA
CTCCGCTGCCTGCCGGGCGAGGGGGGGGACCCCGGGAAGCCGGTTCAAGA
AGAGGTAGTTTTAGCTCCTCCTACGGCGGCGGGGGCGGGAGTTCGGCCGG
GCGCGGGGGGGGCGGGTCGGGAGGGCGCGCTGACTACCACTCGCTCTGCT
TCTCGAGCTCGTCTTCTAGCAGTGGCAACACCACGGCCGGCAACACCACG
CCGCATAGCAGTTCGCTGTCGGCGTCGTCGCCTTTCCCGAACCTGCTGGA
CGGGGCCGACGACTCGGCTTCCTCCACGTCTTAG
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