mRNA_E_fasciculatus_S2_contig803.16195.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI) HSP 1 Score: 192 bits (487), Expect = 4.810e-53 Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 1
Query: 241 GASELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQATQVR 546
G SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPAS KGLMKGITDNECVAAMIGDVKVAVAGLAQATQ +
Sbjct: 1248 GVSELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASQKGLMKGITDNECVAAMIGDVKVAVAGLAQATQAK 1349
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: DUF814-domain-containing (protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRS9_9STRA) HSP 1 Score: 117 bits (294), Expect = 3.780e-27 Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 1
Query: 238 DGASELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQATQ 540
D +ELD+LTGKP ED++LFAVPVC PY SL Y Y+VKLTPG KRGKASKQ I++F R P +GL+K + DNE V A+ GDVK++ AG ++A Q
Sbjct: 906 DDTAELDKLTGKPLGEDLILFAVPVCAPYQSLSKYAYRVKLTPGNMKRGKASKQCIDMFLRESAVPEHCRGLIKNVADNEWVQAICGDVKISAAGASKAIQ 1006
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: Nuclear (export mediator factor nemf-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RK70_9CHLO) HSP 1 Score: 111 bits (277), Expect = 1.110e-26 Identity = 50/96 (52.08%), Postives = 74/96 (77.08%), Query Frame = 1
Query: 247 SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQA 534
+ELD LTG PR +D+LLFA+PVC PY +L YKY+VKLTPG+QK+GKA+K+A+++F R + + K L++ +TD E V+ M+G V++++ GLA A
Sbjct: 144 TELDSLTGIPRXDDLLLFAIPVCAPYAALNGYKYRVKLTPGRQKKGKAAKEALDIFGRVNEATSREKELIRAVTDTEAVSGMVGPVQISMPGLAAA 239
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M4N2_CHABU) HSP 1 Score: 115 bits (289), Expect = 1.830e-26 Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 1
Query: 247 SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQATQ 540
+ELD LTG PR++DVLL+AVPVCGPY +L++YKY+VKLTPG K+GKA++ A+EVF+R+ D K LMK + + E VA MIG+VKVA GL + Q
Sbjct: 1276 TELDSLTGVPREDDVLLYAVPVCGPYSALQNYKYRVKLTPGTVKKGKAARTAVEVFARTVDVSPRQKDLMKAVPETELVAVMIGNVKVAAPGLMKIRQ 1373
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HPI5_9STRA) HSP 1 Score: 106 bits (265), Expect = 3.540e-26 Identity = 50/93 (53.76%), Postives = 70/93 (75.27%), Query Frame = 1
Query: 247 SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGL 525
+EL++LTG P DV++F VPVCGPY SL+ YKYKVKLTPG K+G+A KQA++VF+R ++ + L+K ++DNE V +IG+VKV+ GL
Sbjct: 23 TELNKLTGLPLPSDVIMFCVPVCGPYQSLQRYKYKVKLTPGSTKKGRAGKQALDVFTRMKECSPRERDLIKFVSDNELVQTIIGEVKVSTPGL 115
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: nuclear (export mediator factor NEMF-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CF237) HSP 1 Score: 104 bits (260), Expect = 1.940e-25 Identity = 51/98 (52.04%), Postives = 68/98 (69.39%), Query Frame = 1
Query: 247 SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQATQ 540
+++D LTG P D+LL+AVPVCGPY +L+ YKY+VK+ PG K+GKA+K A+ +FS + K LMK TD E VAA+IG+VK+ AGL Q Q
Sbjct: 23 NDMDYLTGNPLSSDILLYAVPVCGPYSALQSYKYRVKIIPGSAKKGKAAKTAMNLFSHMSEATNREKELMKACTDPELVAAIIGNVKITAAGLTQLKQ 120
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: Nuclear (export mediator factor NEMF (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XG72_9CHLO) HSP 1 Score: 110 bits (274), Expect = 4.510e-25 Identity = 52/101 (51.49%), Postives = 73/101 (72.28%), Query Frame = 1
Query: 238 DGASELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQATQ 540
D ++LD LTG PR +DVLLFAVPVC PY +L+ YKYK+KLTPG Q++GKA++QA+E+ SR DTP K +K + D + + A +G VK+++ GL + Q
Sbjct: 302 DRLTQLDSLTGVPRPDDVLLFAVPVCAPYSALQGYKYKLKLTPGTQRKGKAARQAVELLSRQPDTPVREKDFIKAVPDMDMINAFVGTVKLSMPGLVKIKQ 402
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: Nuclear (export mediator factor Nemf n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314ZFJ4_PRUYE) HSP 1 Score: 107 bits (267), Expect = 4.680e-24 Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 1
Query: 247 SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQATQVRFSIISRSASAG 579
+++D LTG P D+LL+AVPVCGPY S++ YKY+VK+TPG KRGKA+K A+ +FS + K LMK TD E VAA+IG+VK+ AGL Q Q + + ++ AG
Sbjct: 305 NDVDYLTGNPLPSDILLYAVPVCGPYSSVQSYKYRVKITPGSVKRGKAAKTAMNLFSHMTEATVREKELMKACTDPELVAAIIGNVKITSAGLTQLKQKQKKVKKSNSKAG 415
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: CCHC-type (domain-containing protein n=4 Tax=Punica granatum TaxID=22663 RepID=A0A218XUR9_PUNGR) HSP 1 Score: 107 bits (268), Expect = 1.160e-23 Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = 1
Query: 247 SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQATQ 540
+++D LTG P D+LL+AVPVCGPY +L+ YKY+VK+TPG K+GKA+K A+ +FS + + K LMK TD E VAA+IG+VKV+ AGL+Q Q
Sbjct: 1026 NDVDYLTGNPLPSDILLYAVPVCGPYNALQSYKYRVKITPGTAKKGKAAKMAMNLFSHMPEATSREKELMKACTDPELVAAIIGNVKVSAAGLSQLKQ 1123
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.170e-23 Identity = 53/97 (54.64%), Postives = 74/97 (76.29%), Query Frame = 1
Query: 250 ELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQATQ 540
+L+RLTG P +DVLLF +PVC PY SL YK++VKLTPG QK+GKA KQ+++VF RS++ + + L++ ++DNE V ++IGDVKV+ GL QA Q
Sbjct: 1110 DLNRLTGVPHVDDVLLFCIPVCAPYQSLNGYKFRVKLTPGTQKKGKAGKQSMDVFQRSKECTSRERDLIRMVSDNELVHSIIGDVKVSTPGL-QAAQ 1205 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig803.16195.1 >prot_E_fasciculatus_S2_contig803.16195.1 ID=prot_E_fasciculatus_S2_contig803.16195.1|Name=mRNA_E_fasciculatus_S2_contig803.16195.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=194bp AGGGIGSDGDKADSRSGEKAGEHGGDGEQRDASGLDAQEEEEPLSRRAQKback to top mRNA from alignment at E_fasciculatus_S2_contig803:44..1377+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig803.16195.1 ID=mRNA_E_fasciculatus_S2_contig803.16195.1|Name=mRNA_E_fasciculatus_S2_contig803.16195.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1334bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig803:44..1377+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig803:44..1377+ >mRNA_E_fasciculatus_S2_contig803.16195.1 ID=mRNA_E_fasciculatus_S2_contig803.16195.1|Name=mRNA_E_fasciculatus_S2_contig803.16195.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=582bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig803:44..1377+ (Ectocarpus fasciculatus EfasUO2)back to top |