mRNA_E_fasciculatus_S2_contig8023.16190.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8023.16190.1
Unique NamemRNA_E_fasciculatus_S2_contig8023.16190.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8023.16190.1 vs.
Match: Similar (to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN6_ECTSI)

HSP 1 Score: 451 bits (1161), Expect = 1.030e-152
Identity = 393/464 (84.70%), Postives = 404/464 (87.07%), Query Frame = 1 
Query:    1 MNSGDLLGVAILSKSEDDVRRMIGKPGFRRHSLNQAL-SGGHTPLALAASAGRLGMVKLLIDAGADPLAYCDGDNCIHVAARYGHPTIVSELIRRGTSVEVSTLDQRRPLFIAAQQSSVETVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQWAVQESHMEAAVLLTTYTPSAVQRPRNSLHLCVLRKDFGGARDLLNRGAPPDDADRDGVTPLQSAVLIASPRMVEVLLRGGADESAALPAARAGGKAGVTPLALSSARLSGRRQECADARVARARVLVRDALLRVGAVRVGCWWWPEV-GMMPAAKGGGSXXXXXXXSARRTVQGKNGVGSGDGLETSFGKGRAQGVRLVRLGNRDRSKRVALMTTTVLSR 1386
            M+SGDLLGVAIL+KSEDDVRRMIGKPGFRRHSLNQ L SG HTPL LA SAGRLGMVKLLIDAGADPLAYCDGDNCIHVAARYGHP IVSELIRRG SVEVSTLDQRRPLFIA         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        MEAAVLLTTY PS V+RP +SLHLCVLR DFG ARDLL+RGAPPD ADRDGVTPLQSAVLIASPRMVEV+LRGGADESAALPAARAGGKAGVTPLALSSARLSGRRQECADARVARARV VRDALLRVGAVR GCW WPE+  ++P A G          SA R VQGK GVGSGDGL  S G+GR  G  LVRLGNRDRSKRVALMT   L+R
Sbjct:    1 MDSGDLLGVAILTKSEDDVRRMIGKPGFRRHSLNQVLRSGDHTPLGLATSAGRLGMVKLLIDAGADPLAYCDGDNCIHVAARYGHPKIVSELIRRGVSVEVSTLDQRRPLFIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEAAVLLTTYRPSPVRRPPDSLHLCVLRNDFGAARDLLSRGAPPDHADRDGVTPLQSAVLIASPRMVEVMLRGGADESAALPAARAGGKAGVTPLALSSARLSGRRQECADARVARARVRVRDALLRVGAVRAGCWRWPELLEVLPVASGEEVATGSALSSAGRAVQGKKGVGSGDGLGASLGRGRVPGAGLVRLGNRDRSKRVALMTKAALNR 464
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8023.16190.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Similar1.030e-15284.70to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8023contigE_fasciculatus_S2_contig8023:2275..5139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score456.4
Seed ortholog evalue1.6e-125
Seed eggNOG ortholog2880.D8LNN6
Model size1428
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size1428
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842464.4162176-CDS-E_fasciculatus_S2_contig8023:2274..23171696842464.4162176-CDS-E_fasciculatus_S2_contig8023:2274..2317Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8023 2275..2317 -
1696842464.4352849-CDS-E_fasciculatus_S2_contig8023:2774..37341696842464.4352849-CDS-E_fasciculatus_S2_contig8023:2774..3734Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8023 2775..3734 -
1696842464.450736-CDS-E_fasciculatus_S2_contig8023:4189..43711696842464.450736-CDS-E_fasciculatus_S2_contig8023:4189..4371Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8023 4190..4371 -
1696842464.462573-CDS-E_fasciculatus_S2_contig8023:4896..51391696842464.462573-CDS-E_fasciculatus_S2_contig8023:4896..5139Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8023 4897..5139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8023.16190.1prot_E_fasciculatus_S2_contig8023.16190.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8023 2275..5139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8023.16190.1

>prot_E_fasciculatus_S2_contig8023.16190.1 ID=prot_E_fasciculatus_S2_contig8023.16190.1|Name=mRNA_E_fasciculatus_S2_contig8023.16190.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=476bp
MNSGDLLGVAILSKSEDDVRRMIGKPGFRRHSLNQALSGGHTPLALAASA
GRLGMVKLLIDAGADPLAYCDGDNCIHVAARYGHPTIVSELIRRGTSVEV
STLDQRRPLFIAAQQSSVETVRVLIEAGADIEWRHEGFFTALFMAAQSGR
TGVAIELIKSGAYTGPQGRHRWTPLMQSAHRGYLDIAKALLAHQCPPDSR
NEQGCTALHLAAAANQGGIMKLLLDYGADRDLESFEGATPLQWAVQESHM
EAAVLLTTYTPSAVQRPRNSLHLCVLRKDFGGARDLLNRGAPPDDADRDG
VTPLQSAVLIASPRMVEVLLRGGADESAALPAARAGGKAGVTPLALSSAR
LSGRRQECADARVARARVLVRDALLRVGAVRVGCWWWPEVGMMPAAKGGG
SASGSGSSSARRTVQGKNGVGSGDGLETSFGKGRAQGVRLVRLGNRDRSK
RVALMTTTVLSRYVSRSLCKPDLEG*
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mRNA from alignment at E_fasciculatus_S2_contig8023:2275..5139-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8023.16190.1 ID=mRNA_E_fasciculatus_S2_contig8023.16190.1|Name=mRNA_E_fasciculatus_S2_contig8023.16190.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2865bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8023:2275..5139- (Ectocarpus fasciculatus EfasUO2)
ATGAACAGCGGTGATTTGCTGGGCGTCGCCATCCTTTCCAAGTCCGAGGA
TGACGTTCGGCGGATGATCGGGAAACCCGGCTTTAGGCGCCACAGCTTGA
ACCAAGCCCTGTCGGGCGGCCACACCCCGCTCGCGTTGGCGGCGTCCGCC
GGGCGCTTGGGCATGGTGAAGCTCCTGATCGATGCGGGAGCGGATCCGCT
GGCCTACTGCGATGGGGACAACTGCATCCACGTTGCCGCTAGGGTGGGTG
CGAGGCATTACATGTCTACATCAAAGTCTTGTGAGGACAGAGTCTTGCGT
TGTGTATTGTACGGTAGCCTCGCGTGGGAGGGACAGGCACCGTCGTAGTA
AATAGTACGGTCGTTGCATAAGATATCACACCCCCTGGACCGATTTTCAC
AACTCGATTACTTTCGACAAGAGAAGAAAAGTGACGAAGGTGAAGGTGCG
GCGAAAACGTCGACGTTGGAACCGTCTCTGTCGTACGAGATACAATAGCT
TTCCGAAATCATGTCATATTTATTCGGCATCCTCTTGGACGTGGAGTAGT
CGAGCTTTGAAGATTGGTCCAGGGCTGTGGTATCTTCTGCAACCCCCGGT
AGACCATGGTCCAGCACGCGACTATTGCTCGTTGTTGTTTGTCGCTGTTG
TCGGGCGATATTGGACCAGGTGGCCAAGATCACCCTCCACCTGCGATGTT
TCCCACCTTCCCCGCGTGTCTCCTCACCCCGACCCCCGCTCACGCGCCCC
TCGTGATTGTTTCGCCAGTACGGACACCCAACGATCGTGTCGGAGCTCAT
CAGGAGAGGGACCAGCGTAGAGGTTAGCACGTTGGACCAGCGTCGGCCTC
TCTTCATCGCGGCGCAGCAGAGTTCCGTGGAAACTGTCCGGGTGTTGATC
GAGGCAGGAGCGGACATCGAGTGGCGGCACGAGGGCTTCTTCACCGCACT
GTGAGTTTTTTTTGTTTGTTTTCTCTCACAGCAAGACAACAAATCCATGT
ATTTATCCACAGAGAAGTGTCTGGGATAATAGTTGGCGATGAGTTAAGAT
ACAGCCGTGTTTCATTGCCTACCTGTGCACGTGTTTCTACTCTCACGTGT
TGCTTGCTCTCTGTGGCAAAAAGTCGGACTGCAACAACGCTTGTCGCTAT
CCTAGCCCCGCTCCTGTCACCCTGTATCGCCGCCCTTGTTCCCGCTCCGA
TACACGCGAAATTTTCGCCACGAGGAACACGGGTTGGGTCGATCAAGCTG
TGCATCGAGTTTATCCTGCAGTCCTGAGCGTGCGGCCGAACGCGTTGATT
GTCCGATGTGGTGATATGGTCACCTTGCGCGCTTGAACGGCGGAGTTGAT
ACACGTTGGAGCTTTCATCCATGTTCTTCCCCCCCCCCTCCTACGCTCAT
GCTAGGTTCATGGCCGCCCAGTCAGGACGAACCGGTGTTGCCATCGAGCT
CATCAAGAGCGGCGCATACACGGGGCCCCAGGGGAGGCACCGCTGGACCC
CCCTCATGCAGAGCGCCCACAGGGGCTACTTGGACATCGCCAAGGCTCTC
CTCGCGCACCAGTGTCCCCCGGACTCGCGGAACGAGCAGGGCTGCACCGC
CCTCCACCTCGCCGCCGCGGCCAACCAGGGCGGGATCATGAAGCTCCTGC
TCGACTACGGCGCGGACCGCGACCTAGAGTCGTTCGAGGGGGCCACGCCG
CTGCAGTGGGCGGTCCAAGAGAGCCACATGGAGGCGGCCGTTCTGCTGAC
GACCTACACGCCGTCCGCCGTGCAGCGGCCCCGGAACAGCCTGCATCTCT
GCGTCCTCCGAAAGGACTTCGGGGGCGCGCGCGACCTGCTCAACAGGGGG
GCTCCGCCAGATGACGCCGACAGGGACGGGGTTACCCCCCTCCAGAGCGC
GGTCCTTATCGCTTCGCCGAGGATGGTGGAGGTCCTGCTGCGCGGGGGCG
CCGATGAATCGGCGGCGCTGCCCGCCGCCCGCGCGGGAGGGAAGGCCGGC
GTGACCCCGCTAGCCCTCTCCTCCGCGAGACTGTCGGGACGACGGCAGGA
GTGCGCCGACGCCCGCGTGGCCAGGGCCAGGGTGCTCGTGCGGGACGCTC
TGCTGAGGGTGGGCGCGGTTCGCGTGGGGTGTTGGTGGTGGCCAGAAGTG
GGGATGATGCCCGCAGCGAAGGGTGGAGGGTCGGCGTCGGGAAGCGGGTC
ATCATCGGCGAGGAGAACGGTCCAGGGAAAGAATGGGGTCGGTTCGGGTG
ATGGTTTGGAGACGTCTTTCGGCAAGGGGAGAGCACAGGGCGTTAGGCTG
GTTCGGCTCGGGAACCGTGACAGAAGCAAGAGAGTAGCGCTGATGACGAC
GACGGTGTTGAGCAGGTGCGCCCTCCTGTGTTGCCTGCCACGTTGTCGTT
GATTGCTTCGCGGGTTTGCATGCGTATTCTGACGTGCTTTTGTATGGCGT
TTCGTTTGTTTCGTGCGTCCTTCCCGGCTTGGTTGTGTTGTGCTTAATAC
ATTGCACCCTCGGCGCTTTGGCGAGACAAGGGTTTGCAAACGCTCTAACG
TGTGACCAAGCCCGGCTGATGGTACAGTATTCGAGATCTTTCGCGCGGAC
AATGCAAATAATACATACACGCACGACACACGACACACCTTGCATGCATT
TTGCTTGTGTGGGCGCGAGAGAGGGACCCCCCTCCCCCCCCGACGGGCGC
ACCTCCCTGCGTAGGTAAATATATCAATATATCCCGTAGGTACATGACGA
TACAGGGGACGAAGTCATGATGACAGCCTTTTCTTGCCCCTTGCGGTTTG
TTCGTTGATTCCACTGTACCAGGTACGTCTCTAGGTCCTTGTGCAAGCCG
GACTTGGAGGGATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8023:2275..5139-

>mRNA_E_fasciculatus_S2_contig8023.16190.1 ID=mRNA_E_fasciculatus_S2_contig8023.16190.1|Name=mRNA_E_fasciculatus_S2_contig8023.16190.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1428bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8023:2275..5139- (Ectocarpus fasciculatus EfasUO2)
ATGAACAGCGGTGATTTGCTGGGCGTCGCCATCCTTTCCAAGTCCGAGGA
TGACGTTCGGCGGATGATCGGGAAACCCGGCTTTAGGCGCCACAGCTTGA
ACCAAGCCCTGTCGGGCGGCCACACCCCGCTCGCGTTGGCGGCGTCCGCC
GGGCGCTTGGGCATGGTGAAGCTCCTGATCGATGCGGGAGCGGATCCGCT
GGCCTACTGCGATGGGGACAACTGCATCCACGTTGCCGCTAGGTACGGAC
ACCCAACGATCGTGTCGGAGCTCATCAGGAGAGGGACCAGCGTAGAGGTT
AGCACGTTGGACCAGCGTCGGCCTCTCTTCATCGCGGCGCAGCAGAGTTC
CGTGGAAACTGTCCGGGTGTTGATCGAGGCAGGAGCGGACATCGAGTGGC
GGCACGAGGGCTTCTTCACCGCACTGTTCATGGCCGCCCAGTCAGGACGA
ACCGGTGTTGCCATCGAGCTCATCAAGAGCGGCGCATACACGGGGCCCCA
GGGGAGGCACCGCTGGACCCCCCTCATGCAGAGCGCCCACAGGGGCTACT
TGGACATCGCCAAGGCTCTCCTCGCGCACCAGTGTCCCCCGGACTCGCGG
AACGAGCAGGGCTGCACCGCCCTCCACCTCGCCGCCGCGGCCAACCAGGG
CGGGATCATGAAGCTCCTGCTCGACTACGGCGCGGACCGCGACCTAGAGT
CGTTCGAGGGGGCCACGCCGCTGCAGTGGGCGGTCCAAGAGAGCCACATG
GAGGCGGCCGTTCTGCTGACGACCTACACGCCGTCCGCCGTGCAGCGGCC
CCGGAACAGCCTGCATCTCTGCGTCCTCCGAAAGGACTTCGGGGGCGCGC
GCGACCTGCTCAACAGGGGGGCTCCGCCAGATGACGCCGACAGGGACGGG
GTTACCCCCCTCCAGAGCGCGGTCCTTATCGCTTCGCCGAGGATGGTGGA
GGTCCTGCTGCGCGGGGGCGCCGATGAATCGGCGGCGCTGCCCGCCGCCC
GCGCGGGAGGGAAGGCCGGCGTGACCCCGCTAGCCCTCTCCTCCGCGAGA
CTGTCGGGACGACGGCAGGAGTGCGCCGACGCCCGCGTGGCCAGGGCCAG
GGTGCTCGTGCGGGACGCTCTGCTGAGGGTGGGCGCGGTTCGCGTGGGGT
GTTGGTGGTGGCCAGAAGTGGGGATGATGCCCGCAGCGAAGGGTGGAGGG
TCGGCGTCGGGAAGCGGGTCATCATCGGCGAGGAGAACGGTCCAGGGAAA
GAATGGGGTCGGTTCGGGTGATGGTTTGGAGACGTCTTTCGGCAAGGGGA
GAGCACAGGGCGTTAGGCTGGTTCGGCTCGGGAACCGTGACAGAAGCAAG
AGAGTAGCGCTGATGACGACGACGGTGTTGAGCAGGTACGTCTCTAGGTC
CTTGTGCAAGCCGGACTTGGAGGGATGA
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