mRNA_E_fasciculatus_S2_contig8021.16189.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8021.16189.1
Unique NamemRNA_E_fasciculatus_S2_contig8021.16189.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8021.16189.1 vs.
Match: Peptidase (A1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JP31_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 8.550e-59
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:   49 GAISFMNGEYLMPCSSDLPPLTFTIGGKEYTLEGDEYVISAGNDKVCILAIMGMDVPEPMGPLWILGDVFMRKYYTVFDYGNAQIGLATST 321
            GAISFMNGEYLMPCSSDLPPLTFTIGGKEYTLEGDEYVISAGNDKVCILAIMGMD+PEPMGPLWILGDVFMRKYYTVFDYGNAQIGLATST
Sbjct:  320 GAISFMNGEYLMPCSSDLPPLTFTIGGKEYTLEGDEYVISAGNDKVCILAIMGMDIPEPMGPLWILGDVFMRKYYTVFDYGNAQIGLATST 410
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BLAST of mRNA_E_fasciculatus_S2_contig8021.16189.1 vs.
Match: Hypothetical (protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4J7Z2_9EUKA)

HSP 1 Score: 120 bits (302), Expect = 7.040e-31
Identity = 56/85 (65.88%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:   70 GEYLMPCS--SDLPPLTFTIGGKEYTLEGDEYVISAGNDKVCILAIMGMDVPEPMGPLWILGDVFMRKYYTVFDYGNAQIGLATS 318
            GEY + CS  S LP L+F+IGGK++TLEG EYV+S   +  C+L I G+DVP P GPLWILGDVF+RKYYTVFDYGN QIG AT+
Sbjct:  259 GEYTVDCSKTSSLPTLSFSIGGKDFTLEGSEYVLSVSGE--CLLGITGIDVPAPRGPLWILGDVFLRKYYTVFDYGNNQIGFATA 341
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BLAST of mRNA_E_fasciculatus_S2_contig8021.16189.1 vs.
Match: Hypothetical (protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3XB32_9SPIT)

HSP 1 Score: 114 bits (286), Expect = 7.670e-31
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:   49 GAISFMNGEYLMPCSSDLPPLTFTIGGKEYTLEGDEYVISAGNDKVCILAIMGMDVPEPMGPLWILGDVFMRKYYTVFDYGNAQIGLATS 318
            GA S +  EY++ CS+DLP L+FT+GGK + L+ D+ ++ A   + C+L IM +DVP P GPLWILGDVFMRKYY  FD+GN +IG+AT+
Sbjct:   17 GAKSILGKEYMVDCSADLPDLSFTLGGKTFELKKDDLILEAAGSQ-CLLGIMAIDVPAPRGPLWILGDVFMRKYYVQFDWGNQRIGVATA 105
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BLAST of mRNA_E_fasciculatus_S2_contig8021.16189.1 vs.
Match: Aspartyl (protease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ8_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.240e-30
Identity = 60/108 (55.56%), Postives = 76/108 (70.37%), Query Frame = 1 
Query:    1 VVASPLIPLFSSLSFQGAISF-MNGEYLMPCSSDLPPLTFTIGGKEYTLEGDEYVISAGNDKVCILAIMGMDVPEPMGPLWILGDVFMRKYYTVFDYGNAQIGLATST 321
            ++A P   + +     GAI   +N EY++PC   LP LTFTI GK+Y L GDEYVI+AGN  +C+LAIMG+DVP   GP+WILGD FMRKYY+VFD  N ++G A ST
Sbjct:  288 LLAGPTAEVAAMAQQVGAIKLPINNEYVIPCGMPLPTLTFTIDGKDYPLNGDEYVINAGNG-ICLLAIMGIDVPA--GPMWILGDTFMRKYYSVFDMENKRMGFARST 392
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BLAST of mRNA_E_fasciculatus_S2_contig8021.16189.1 vs.
Match: Lysosomal (aspartic protease-like n=2 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=A0A3B4WHQ6_SERLL)

HSP 1 Score: 113 bits (282), Expect = 4.160e-30
Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:   70 GEYLMPCS--SDLPPLTFTIGGKEYTLEGDEYV--ISAGNDKVCILAIMGMDVPEPMGPLWILGDVFMRKYYTVFDYGNAQIGLA 312
            GEY + C+  S +P ++FTI GKE+ LEG +YV  +SAG    C+L IMG+DVP P GPLWILGDVF+RKYYT FDYGN ++G A
Sbjct:   41 GEYTVDCAMVSSMPTISFTIAGKEFALEGSDYVLSVSAGGQTECLLGIMGIDVPAPRGPLWILGDVFLRKYYTKFDYGNNRLGFA 125
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BLAST of mRNA_E_fasciculatus_S2_contig8021.16189.1 vs.
Match: Lysosomal (aspartic protease n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8QW15_CALRO)

HSP 1 Score: 112 bits (279), Expect = 7.120e-29
Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 1 
Query:    1 VVASPLIPLFSSLSFQGAISFMNGEYLMPCSS--DLPPLTFTIGGKEYTLEGDEYV--ISAGNDKVCILAIMGMDVPEPMGPLWILGDVFMRKYYTVFDYGNAQIGLATS 318
            ++A P + + +     G +  +NGEY+  C+   +LP +TFTIGG ++ L+GD+YV  I+     VC+   MG+DVP PMGP+WILGDVF+ +YYTVFD GN ++G A S
Sbjct:   83 LIAGPSVEVNALNQLLGGMPIVNGEYMFNCADVPNLPAITFTIGGVDFVLKGDDYVMKITQFGKTVCLSGFMGLDVPPPMGPIWILGDVFIGRYYTVFDMGNDRVGFADS 192
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BLAST of mRNA_E_fasciculatus_S2_contig8021.16189.1 vs.
Match: Peptidase (A1 domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2Z385_CIOSA)

HSP 1 Score: 115 bits (289), Expect = 1.270e-28
Identity = 52/109 (47.71%), Postives = 73/109 (66.97%), Query Frame = 1 
Query:    1 VVASPLIPLFSSLSFQGAISFMNGEYLMPCSS--DLPPLTFTIGGKEYTLEGDEYVI--SAGNDKVCILAIMGMDVPEPMGPLWILGDVFMRKYYTVFDYGNAQIGLAT 315
            ++A P   +       GA SF++GEY++PCSS   LP +TF + GK+Y L   +YV+  SAG + +CI   MG+D+P P GPLWILGD+FM K+YT FD+ N ++G AT
Sbjct:  284 LLAGPSTEIAKINKLIGATSFLHGEYVVPCSSIPTLPDITFMLSGKKYVLTAKDYVMQESAGGESICISGFMGLDIPAPRGPLWILGDIFMGKFYTTFDFANNRVGFAT 392
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BLAST of mRNA_E_fasciculatus_S2_contig8021.16189.1 vs.
Match: Peptidase (A1 domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZQI8_LOTGI)

HSP 1 Score: 111 bits (277), Expect = 1.790e-28
Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = 1 
Query:    1 VVASPLIPLFSSLSFQGAISFMNGEYLMPCS--SDLPPLTFTIGGKEYTLEGDEYV--ISAGNDKVCILAIMGMDVPEPMGPLWILGDVFMRKYYTVFDYGNAQIGLATST 321
            ++A P   +    +  GA     GEY++ C+  S LPP+TF +GGK +TL+G +YV  IS  + K+C+   +G+DVP+P+GPLWILGDVF+  YYT FD G +++G A ST
Sbjct:   84 LLAGPSDEIAKLQTMIGATPLAKGEYMVDCNKISSLPPITFMLGGKPFTLQGKDYVLVISQASVKICLSGFIGLDVPKPLGPLWILGDVFLGPYYTEFDLGKSRVGFANST 194
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8021.16189.1 vs.
Match: Lysosomal (aspartic protease n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=D3PHU2_LEPSM)

HSP 1 Score: 114 bits (286), Expect = 3.020e-28
Identity = 53/110 (48.18%), Postives = 73/110 (66.36%), Query Frame = 1 
Query:    1 VVASPLIPLFSSLSFQGAISFMNGEYLMPCSS--DLPPLTFTIGGKEYTLEGDEYV--ISAGNDKVCILAIMGMDVPEPMGPLWILGDVFMRKYYTVFDYGNAQIGLATS 318
            ++A P I + +     G    +NGEY+  C    +LPP+TFTIGG+E+ L G++YV  I+     VC+   MG+DVPEPMGP+WILGDVF+ +YYTVFD G  ++G A S
Sbjct:  274 LIAGPSIEVNALNQLLGGTPIINGEYMFNCEDIPNLPPITFTIGGEEFVLSGEDYVMQITQFGKTVCLSGFMGLDVPEPMGPIWILGDVFIGRYYTVFDMGKDRVGFAQS 383
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8021.16189.1 vs.
Match: Peptidase (A1 domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XA13_9STRA)

HSP 1 Score: 106 bits (265), Expect = 6.680e-28
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:   49 GAISFMNGEYLMPCSSDLPPLTFTIGGKEYTLEGDEYVISAGNDKVCILAIMGMDVPEPMGPLWILGDVFMRKYYTVFDYGN 294
            GA  F+ GEYL+ CS+  P ++F + GK YTL  DEY +   N  +C+ A MG+D+P P GPLWILGDVFMRK+YTVFD+G 
Sbjct:    6 GAHKFIMGEYLISCSAAAPDISFVLNGKSYTLTKDEYTLK--NGPICLFAFMGIDIPAPAGPLWILGDVFMRKHYTVFDWGT 85
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8021.16189.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Peptidase8.550e-5998.90A1 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
Hypothetical7.040e-3165.88protein n=1 Tax=Prymnesium polylepis TaxID=72548 R... [more]
Hypothetical7.670e-3155.56protein n=1 Tax=Strombidinopsis acuminata TaxID=14... [more]
Aspartyl2.240e-3055.56protease n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
Lysosomal4.160e-3060.00aspartic protease-like n=2 Tax=Seriola lalandi dor... [more]
Lysosomal7.120e-2946.36aspartic protease n=1 Tax=Caligus rogercresseyi Ta... [more]
Peptidase1.270e-2847.71A1 domain-containing protein n=1 Tax=Ciona savigny... [more]
Peptidase1.790e-2845.95A1 domain-containing protein n=1 Tax=Lottia gigant... [more]
Lysosomal3.020e-2848.18aspartic protease n=2 Tax=Lepeophtheirus salmonis ... [more]
Peptidase6.680e-2856.10A1 domain-containing protein (Fragment) n=1 Tax=No... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8021contigE_fasciculatus_S2_contig8021:6389..6712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score196.1
Seed ortholog evalue8.7e-48
Seed eggNOG ortholog2880.D7FLX5
Preferred nameNAPSA
Model size324
KEGG koko:K01379,ko:K01381,ko:K01382,ko:K06883
KEGG Pathwayko04071,ko04138,ko04140,ko04142,ko04210,ko04915,ko05152,map04071,map04138,map04140,map04142,map04210,map04915,map05152
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004190,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0016787,GO:0019538,GO:0030163,GO:0043170,GO:0044238,GO:0070001,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Exons1
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG1339@1,KOG1339@2759
EC3.4.23.25,3.4.23.34,3.4.23.5
Cds size324
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842464.375242-CDS-E_fasciculatus_S2_contig8021:6388..67121696842464.375242-CDS-E_fasciculatus_S2_contig8021:6388..6712Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8021 6389..6712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8021.16189.1prot_E_fasciculatus_S2_contig8021.16189.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8021 6389..6712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8021.16189.1

>prot_E_fasciculatus_S2_contig8021.16189.1 ID=prot_E_fasciculatus_S2_contig8021.16189.1|Name=mRNA_E_fasciculatus_S2_contig8021.16189.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=108bp
VVASPLIPLFSSLSFQGAISFMNGEYLMPCSSDLPPLTFTIGGKEYTLEG
DEYVISAGNDKVCILAIMGMDVPEPMGPLWILGDVFMRKYYTVFDYGNAQ
IGLATST*
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mRNA from alignment at E_fasciculatus_S2_contig8021:6389..6712-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8021.16189.1 ID=mRNA_E_fasciculatus_S2_contig8021.16189.1|Name=mRNA_E_fasciculatus_S2_contig8021.16189.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=324bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8021:6389..6712- (Ectocarpus fasciculatus EfasUO2)
GTGGTGGCTTCCCCTCTGATCCCCTTGTTTTCGTCGCTCTCCTTCCAGGG
TGCGATCAGCTTCATGAACGGAGAGTACCTCATGCCCTGCTCGAGCGACC
TTCCCCCGCTCACCTTCACCATCGGCGGAAAGGAGTACACCCTCGAGGGA
GACGAGTACGTCATCAGCGCCGGCAACGACAAGGTCTGCATCCTGGCCAT
CATGGGCATGGACGTGCCCGAGCCGATGGGCCCCCTCTGGATCCTCGGCG
ACGTCTTCATGCGCAAGTACTACACGGTCTTCGACTACGGGAACGCCCAG
ATCGGCCTGGCTACGTCCACCTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8021:6389..6712-

>mRNA_E_fasciculatus_S2_contig8021.16189.1 ID=mRNA_E_fasciculatus_S2_contig8021.16189.1|Name=mRNA_E_fasciculatus_S2_contig8021.16189.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=324bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8021:6389..6712- (Ectocarpus fasciculatus EfasUO2)
GTGGTGGCTTCCCCTCTGATCCCCTTGTTTTCGTCGCTCTCCTTCCAGGG
TGCGATCAGCTTCATGAACGGAGAGTACCTCATGCCCTGCTCGAGCGACC
TTCCCCCGCTCACCTTCACCATCGGCGGAAAGGAGTACACCCTCGAGGGA
GACGAGTACGTCATCAGCGCCGGCAACGACAAGGTCTGCATCCTGGCCAT
CATGGGCATGGACGTGCCCGAGCCGATGGGCCCCCTCTGGATCCTCGGCG
ACGTCTTCATGCGCAAGTACTACACGGTCTTCGACTACGGGAACGCCCAG
ATCGGCCTGGCTACGTCCACCTAA
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