mRNA_E_fasciculatus_S2_contig8014.16184.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8014.16184.1 vs.
Match: Methyltransf_25 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK1_ECTSI) HSP 1 Score: 433 bits (1114), Expect = 7.540e-146 Identity = 222/257 (86.38%), Postives = 231/257 (89.88%), Query Frame = 1
Query: 1 TQVTVFNVGKHATLAQFEKILKNNGVEYKRAKKPPSITHGTLTFETAEQRTVAMEKLGKIVGARGGELMYAVLARQRQNNDNSRGNKRSGRDGXXXXXXXXGSKRPRQETERKTVAQATASLYGVKTYPEQLAFKEKTLMDDLFLKLPVVIRR-WDKRFREWKRNQAKKQGGGA--LNKPAELRCPSWCKMFKRRDGTVPFDVLPMVPAPEPEGYRNKCEFTLSLSEDGLATAGFRAGGFQAGVPITVESPKDCPQV 762
T+VTVFNVGKHATLAQFEKILKNN V+YKRAKK PSITHGTLTFETAEQR VAME+L KIVGARGGELM+AVLARQ+QNND RGNKRS RDG SKRPRQE ERKTVAQATASLYGVKTYPEQLAFKEKTLMDDLFLKLP+VIR WDKRFREWKRNQ KQGGG LNKPAELRCP+WC+MFKRRDGTVPFDV P+VPAPEPEGYRNKCEFTLSLSEDGLATAGFRAG FQAGVPITVESPKDCPQV
Sbjct: 74 TKVTVFNVGKHATLAQFEKILKNNSVQYKRAKKTPSITHGTLTFETAEQRAVAMEQLRKIVGARGGELMFAVLARQKQNNDIGRGNKRSARDGDDDGRGGDASKRPRQEAERKTVAQATASLYGVKTYPEQLAFKEKTLMDDLFLKLPIVIRNEWDKRFREWKRNQGMKQGGGGGTLNKPAELRCPAWCRMFKRRDGTVPFDVSPIVPAPEPEGYRNKCEFTLSLSEDGLATAGFRAGRFQAGVPITVESPKDCPQV 330
BLAST of mRNA_E_fasciculatus_S2_contig8014.16184.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9G9_9PHAE) HSP 1 Score: 417 bits (1072), Expect = 7.630e-145 Identity = 216/257 (84.05%), Postives = 226/257 (87.94%), Query Frame = 1
Query: 1 TQVTVFNVGKHATLAQFEKILKNNGVEYKRAKKPPSITHGTLTFETAEQRTVAMEKLGKIVGARGGELMYAVLARQRQNNDNSRGNKRSGRDGXXXXXXXXGSKRPRQETERKTVAQATASLYGVKTYPEQLAFKEKTLMDDLFLKLPVVIRR-WDKRFREWKRNQAKKQ--GGGALNKPAELRCPSWCKMFKRRDGTVPFDVLPMVPAPEPEGYRNKCEFTLSLSEDGLATAGFRAGGFQAGVPITVESPKDCPQV 762
T+VTVFNVGKHATLAQFEKILKNNGVEYKRAKK PSITHGTLTFETA QR VAME+LGKIVGARGGELM+AVLARQ+QN R+ R+G SKR RQE ERKTVAQATASLYGVKTYPEQLAFKEKTLMDDLFLKLP+VIR WDKRFREWKRNQ KQ GGGALNKPAELRCP+WC+MFKRRDGTVPFDV P+VPAPEPEGYRNKCEFTLSLSEDGLATAGFRAG FQAGVPITVESPKDCPQV
Sbjct: 69 TKVTVFNVGKHATLAQFEKILKNNGVEYKRAKKTPSITHGTLTFETAAQRAVAMEQLGKIVGARGGELMFAVLARQKQNXXXXXXXXRNAREGDDDGRGGNASKRSRQEVERKTVAQATASLYGVKTYPEQLAFKEKTLMDDLFLKLPLVIRNEWDKRFREWKRNQGVKQDSGGGALNKPAELRCPAWCRMFKRRDGTVPFDVSPIVPAPEPEGYRNKCEFTLSLSEDGLATAGFRAGRFQAGVPITVESPKDCPQV 325
BLAST of mRNA_E_fasciculatus_S2_contig8014.16184.1 vs.
Match: zinc (finger CCCH domain-containing protein 24 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C6BC3) HSP 1 Score: 72.8 bits (177), Expect = 5.970e-11 Identity = 68/238 (28.57%), Postives = 103/238 (43.28%), Query Frame = 1
Query: 52 EKILKNNGVEYKRAKKPPSITHGTLTFETAEQRTVAMEKL-GKIVGARGGELMYAVLARQRQNNDNSRGNKRSGRDGXXXXXXXXGSKRPRQETERKTVAQATASLYGVKTYPEQLAFKEKTLMDDLFLKLPVVIRRWDKRFREWKRNQAKKQGGGALNKPAELRCPSWCKMFKRRDGTVPFDVLPMVPAPEPEGYRNKCEFTLSLSEDGLATAGFRAGGFQAGVPITVESPKDCPQV 762
+K L++ GV++K AKK + +TFE AE +E L GK VG + ++ + R + N + SG G R + + A+ + +YPEQL K ++M L ++ RN K G + P W + R G +P ++ ++ +P GYRNKCEF++ S G TAGF G F+ GV VE P DCP +
Sbjct: 179 KKFLRDQGVQFKFAKKKKGMAVSFVTFENAEHLQSGVEILEGKSVGNKKLKIADCI---PRSCDKNIKSAMESG----------AGDSRSSNDAVKVKSAREAVTPLAHLSYPEQLEQKRSSIMQML---------------KKLTRNARKACSNG-------ISLPEWV-LKSREIGGLPCNLEGVMESPVINGYRNKCEFSIGYSVQGKLTAGFMLGNFREGV-TAVEEPLDCPNI 379
BLAST of mRNA_E_fasciculatus_S2_contig8014.16184.1 vs.
Match: tRNA ((uracil-5-)-methyltransferase homolog A-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455164A) HSP 1 Score: 65.1 bits (157), Expect = 2.190e-8 Identity = 69/266 (25.94%), Postives = 118/266 (44.36%), Query Frame = 1
Query: 4 QVTVFNVGKHATLAQFEKILKNNGVEYKRAKKPPSITHGTLTFETAEQRTVAMEKL------GKIVGARGGELM---YAVLARQRQNNDNSRGNKRSGRDGXXXXXXXXGSKRPRQETERKTVAQATASLYGV--KTYPEQLAFKEKTLMDDLFLK-LPVVIRRWDKRFREWKRNQAKKQGGGALNKPAELRCPSWCKMFKRRDGTVPFDVLPMVPAPEPEGYRNKCEFTLSLSEDGL-ATAGFRAGGFQAGVPITVESPKDCPQV 762
++ + N+ +H AQ +K+L N ++ K+ K T+ +TF E + A++ L G+I+ A+ + + YA +++ D S G+ + GSKR R+E + S+ + + Y +QL K+ M+ FL+ L ++++ W Q KK G A ++ P+ P+P E YRNKCEFT+ S DG+ T GFR G ++ G ++V +P C V
Sbjct: 104 KIEIKNLPRHFGFAQLKKMLVNLQLKPKKVKAVNRATYAFVTFSNEEDKEEALKVLDGHKWKGQILKAKLAKPIEDPYAKSVALKRSQDESEGDSK-------------GSKRRREEESLPVEERLNNSVTPLWKQPYEDQLEIKQNNTME--FLRHLTKMLQKNVGDITPWLAQQRKKHNGMAC------------------------ELEPIKPSPVLENYRNKCEFTVGKSVDGIDKTVGFRLGSYRGG-QVSVVNPSACSHV 329
BLAST of mRNA_E_fasciculatus_S2_contig8014.16184.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DBG4_9FUNG) HSP 1 Score: 58.2 bits (139), Expect = 4.570e-6 Identity = 68/246 (27.64%), Postives = 114/246 (46.34%), Query Frame = 1
Query: 4 QVTVFNVGKHATLAQFEKILKNNGVEYKRAKKPPSITHGTLTFETAEQRTVAMEKL-GKIVGARGGELMYAVLARQRQNNDNSR--GNKRSGRDGXXXXXXXXGSKRPRQETERKTVAQATASLYGVKTYPEQLAFKEKTL-MDDLFLKLPVVIRRWDKRFREWKRNQAKKQGGGALNKPAELRCPSWCKMFKRRDGT--VPFDVLPMVPAPEPEGYRNKCEFTLSLSEDGLATAGFRAGGFQAGV 723
Q+ + ++ K K+ ++ +++ R KK P L F T E+R A+++L G + + V ++ N N + +K++ + + T + +A T L+ V +Y +QL KEKT M +FL F++ + G +L P +L SW ++ DG+ +P +LP+VP+P +GYRNKCEF++ LS DG T GF G F+ GV
Sbjct: 66 QLYLQHLPKDINGVDIRKLCEDVSIKFTRFKKAPHWEFAFLDFNTPEERDHAIQRLDGHSYKGKSLKACMPVEKPPKEPNRNVQHSNSKKNPKKVKGRKNDDSFNNDNDDRTALEKLADQTTPLWRV-SYDDQL--KEKTKDMAQVFLD-----------FKKQLLATVDLENGKSL--PQDL---SW---IRQEDGSGGLPCSLLPIVPSPVIDGYRNKCEFSMGLSPDGEETVGFLLGLFKDGV 289
BLAST of mRNA_E_fasciculatus_S2_contig8014.16184.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167KV18_PHYB8) HSP 1 Score: 55.8 bits (133), Expect = 2.670e-5 Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 565 FKRRDGTVPFDVLPMVPAPEPEGYRNKCEFTLSLSEDGLATAGFRAGGFQAGVPITVESPKDC 753
+ R+ G +P + ++P+PE GYR KCEFT+ DG T GF G ++AG+ +E P +C
Sbjct: 215 WARQPGALPCPISSIIPSPEINGYRTKCEFTIGKDLDGRRTVGFLLGLYRAGITAVLE-PSEC 276
BLAST of mRNA_E_fasciculatus_S2_contig8014.16184.1 vs.
Match: S-adenosyl-L-methionine-dependent (methyltransferase n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IYN9_9FUNG) HSP 1 Score: 54.7 bits (130), Expect = 6.210e-5 Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1
Query: 586 VPFDVLPMVPAPEPEGYRNKCEFTLSLSEDGLATAGFRAGGFQAGVPITVE 738
P++VL ++P+PE EGYR KCEFT+ + DG T GF G F+ G+ +E
Sbjct: 208 TPWEVLDIIPSPEVEGYRTKCEFTIGKNLDGEPTVGFLLGLFRMGIVSVLE 258 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8014.16184.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8014.16184.1 >prot_E_fasciculatus_S2_contig8014.16184.1 ID=prot_E_fasciculatus_S2_contig8014.16184.1|Name=mRNA_E_fasciculatus_S2_contig8014.16184.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=254bp TQVTVFNVGKHATLAQFEKILKNNGVEYKRAKKPPSITHGTLTFETAEQRback to top mRNA from alignment at E_fasciculatus_S2_contig8014:11..5031- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8014.16184.1 ID=mRNA_E_fasciculatus_S2_contig8014.16184.1|Name=mRNA_E_fasciculatus_S2_contig8014.16184.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5021bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8014:11..5031- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8014:11..5031- >mRNA_E_fasciculatus_S2_contig8014.16184.1 ID=mRNA_E_fasciculatus_S2_contig8014.16184.1|Name=mRNA_E_fasciculatus_S2_contig8014.16184.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=762bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8014:11..5031- (Ectocarpus fasciculatus EfasUO2)back to top |