mRNA_E_fasciculatus_S2_contig8011.16181.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8011.16181.1
Unique NamemRNA_E_fasciculatus_S2_contig8011.16181.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8011.16181.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV46_ECTSI)

HSP 1 Score: 372 bits (955), Expect = 1.500e-126
Identity = 198/219 (90.41%), Postives = 202/219 (92.24%), Query Frame = 1
Query:   25 LLAGLCLSVLSLGVLTRTGDDNVFLSFGVGGGAEKENTGATARRWLRGEGWGDHSAGRDQGSILSRAFRRLATARAPPGHPYFTDDEXXXXXXXXXXXXXXXXXXXXGHFWHKPLHPIDGWDVTGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPAADRPLVDWDLILVMEPLTIGGALVGSFINKV 681
            +LAGLCL VLSL VL RTGDDNVF+SFGVGG AEKE+TGATARRWLRGEGWG  SAGRDQGS+LSRAFRRLATARAPPGHPYFTDDE       XXXXXXXXX    GHFWHKPLHPIDGWDVTGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPAADRPLVDWDLILVMEPLTIGGALVGSFINKV
Sbjct:    1 MLAGLCLLVLSLVVLARTGDDNVFVSFGVGG-AEKESTGATARRWLRGEGWGGDSAGRDQGSVLSRAFRRLATARAPPGHPYFTDDEQAVIFEAXXXXXXXXXHNHHGHFWHKPLHPIDGWDVTGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPAADRPLVDWDLILVMEPLTIGGALVGSFINKV 218          
BLAST of mRNA_E_fasciculatus_S2_contig8011.16181.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ9_9PHAE)

HSP 1 Score: 358 bits (919), Expect = 5.890e-119
Identity = 194/214 (90.65%), Postives = 199/214 (92.99%), Query Frame = 1
Query:    1 MSRYARPALLAGLCLSVLSLGVLTRTGDDNVFLSFGVGGGAEKENTGATARRWLRGEGWGDHSAGRDQGSILSRAFRRLATARAPPGHPYFTDDEXXXXXXXXXXXXXXXXXXXXGHFWHKPLHPIDGWDVTGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPAADRPLVDWDLILVMEPLT 642
            MSRY RPALLAGLCLSVLSL V TRTGDDN+FLSFGVGG AEKENTGATARRWLRGEGWGDHSAG+ Q S+LSRAFRRLATARAPPG PYFTDDE       XXXXXXXXXXXXXGH+WHKPLHPIDGWDVT VGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLN+SKRHPAADRPLVDWDLILVMEPLT
Sbjct:    1 MSRYRRPALLAGLCLSVLSLVVRTRTGDDNIFLSFGVGG-AEKENTGATARRWLRGEGWGDHSAGKGQESVLSRAFRRLATARAPPGQPYFTDDEQAVIFEAXXXXXXXXXXXXXGHYWHKPLHPIDGWDVTAVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNISKRHPAADRPLVDWDLILVMEPLT 213          
BLAST of mRNA_E_fasciculatus_S2_contig8011.16181.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCS1_9STRA)

HSP 1 Score: 172 bits (435), Expect = 8.990e-50
Identity = 88/112 (78.57%), Postives = 93/112 (83.04%), Query Frame = 1
Query:  358 HKPLHPIDGWDVTGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPAADRPLVDWDLILVMEPLTIGGALVGSFINKVSLWW 693
            HK L P+   DV G+ LA IGLMIAA GGIGGGGILVPLYILVL F PK AIPLSNITIFGGAITNT+LN  KRHP ADRPLVDWDLILVMEPLTI GALVGSF+NK+   W
Sbjct:   52 HKDLFPLSARDVIGMLLAIIGLMIAAGGGIGGGGILVPLYILVLDFHPKFAIPLSNITIFGGAITNTILNSPKRHPLADRPLVDWDLILVMEPLTIAGALVGSFLNKILPEW 163          
BLAST of mRNA_E_fasciculatus_S2_contig8011.16181.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS5_9STRA)

HSP 1 Score: 177 bits (450), Expect = 4.550e-49
Identity = 87/112 (77.68%), Postives = 95/112 (84.82%), Query Frame = 1
Query:  346 GHFWHKPLHPIDGWDVTGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPAADRPLVDWDLILVMEPLTIGGALVGSFINKV 681
            G   HK L P+D WD  G+  A IGLMIAA GGIGGGGILVP+++L++ F PK+AIPLSNITIFGGAITN  LNLSKRHP ADRPLVDWDLILVMEPLTIGGALVGSFINKV
Sbjct:   62 GQSHHKKLLPLDAWDKAGIFAAIIGLMIAAGGGIGGGGILVPIFVLIMRFHPKYAIPLSNITIFGGAITNVALNLSKRHPLADRPLVDWDLILVMEPLTIGGALVGSFINKV 173          
BLAST of mRNA_E_fasciculatus_S2_contig8011.16181.1 vs.
Match: Hypothetical (protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T5B1_HETAK)

HSP 1 Score: 177 bits (450), Expect = 5.790e-49
Identity = 86/108 (79.63%), Postives = 95/108 (87.96%), Query Frame = 1
Query:  358 HKPLHPIDGWDVTGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPAADRPLVDWDLILVMEPLTIGGALVGSFINKV 681
            HK L P+DG D  GV L+ IGLMIAA GGIGGGGILVPLYILVLGF PK+AIPLSNITIFGGAITNT+LN+ KRHP ADRPLVDWDLI++MEPLTI GA+ GSF+NKV
Sbjct:   88 HKDLLPLDGTDFLGVFLSSIGLMIAAGGGIGGGGILVPLYILVLGFSPKYAIPLSNITIFGGAITNTILNIPKRHPVADRPLVDWDLIMIMEPLTIAGAIAGSFVNKV 195          
BLAST of mRNA_E_fasciculatus_S2_contig8011.16181.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ6_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 2.230e-47
Identity = 83/99 (83.84%), Postives = 88/99 (88.89%), Query Frame = 1
Query:  385 WDVTGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPAADRPLVDWDLILVMEPLTIGGALVGSFINKV 681
            WDV  V LA  GLMIAAAGGIGGGGILVP++ILVL F PK+A+PLSNITIFGGAITNT LN+ KRHP ADRPLVDWDLILVMEPLTIGGALVGSFI KV
Sbjct:   12 WDVATVILASFGLMIAAAGGIGGGGILVPIFILVLRFGPKYAVPLSNITIFGGAITNTFLNMKKRHPLADRPLVDWDLILVMEPLTIGGALVGSFIQKV 110          
BLAST of mRNA_E_fasciculatus_S2_contig8011.16181.1 vs.
Match: Hypothetical (protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UW20_9STRA)

HSP 1 Score: 172 bits (437), Expect = 4.400e-47
Identity = 79/108 (73.15%), Postives = 92/108 (85.19%), Query Frame = 1
Query:  358 HKPLHPIDGWDVTGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPAADRPLVDWDLILVMEPLTIGGALVGSFINKV 681
            HKPLHP+D  D  G G A +GLM+AA GGIGGGGILVP YILV+GF PKHAIPLSN+T+ GGAI N++LN  KRHP ADRPL+DWDLILVMEPLTI GAL+G+F+NK+
Sbjct:   83 HKPLHPLDSTDYIGFGCAILGLMVAAGGGIGGGGILVPTYILVMGFSPKHAIPLSNVTVLGGAIANSLLNSRKRHPLADRPLIDWDLILVMEPLTIAGALIGAFLNKL 190          
BLAST of mRNA_E_fasciculatus_S2_contig8011.16181.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y290_HETAK)

HSP 1 Score: 167 bits (422), Expect = 4.590e-46
Identity = 83/113 (73.45%), Postives = 93/113 (82.30%), Query Frame = 1
Query:  358 HKPLHPIDGWDVTGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPAADRPLVDWDLILVMEPLTIGGALVGSFINKVSLWWT 696
            HK L PI   D  G+ LA IGL+IAA GGIGGGGILVPLY++VL F PK AIPLSNITIFGGAITNT+LN+ KRHP ADRPLVDWDLI++MEPLTI GA+ GSFINKV   W+
Sbjct:   78 HKKLFPIGLLDFLGIFLAAIGLVIAAGGGIGGGGILVPLYVMVLRFSPKFAIPLSNITIFGGAITNTILNIPKRHPHADRPLVDWDLIMIMEPLTIAGAIAGSFINKVLPDWS 190          
BLAST of mRNA_E_fasciculatus_S2_contig8011.16181.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JJ89_9STRA)

HSP 1 Score: 170 bits (431), Expect = 4.930e-46
Identity = 81/108 (75.00%), Postives = 91/108 (84.26%), Query Frame = 1
Query:  358 HKPLHPIDGWDVTGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPAADRPLVDWDLILVMEPLTIGGALVGSFINKV 681
            HKPL P+ G D  G   A IGLM+AA GGIGGGGILVP+YILV+GF PKHAIPLSNIT+FGGA+ NT LN  KRHP A+RPLVDWDLILVMEPLTI GAL+G+F+NKV
Sbjct:  120 HKPLRPLGGNDFVGFFCATIGLMVAAGGGIGGGGILVPIYILVMGFSPKHAIPLSNITVFGGALANTYLNTRKRHPLAERPLVDWDLILVMEPLTIAGALIGAFLNKV 227          
BLAST of mRNA_E_fasciculatus_S2_contig8011.16181.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BYB8_9STRA)

HSP 1 Score: 166 bits (419), Expect = 5.090e-46
Identity = 78/108 (72.22%), Postives = 92/108 (85.19%), Query Frame = 1
Query:  358 HKPLHPIDGWDVTGVGLACIGLMIAAAGGIGGGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPAADRPLVDWDLILVMEPLTIGGALVGSFINKV 681
            HK LHP+D  D  G   A +GL++AA GGIGGGG+LVP++ILV+GF PKHAIPLSNIT+FGGAI NT+LN  KRHP A+RPLVDWDLILVMEPLTI GAL+G+F+NKV
Sbjct:   84 HKRLHPLDASDKYGFFFATLGLIVAAGGGIGGGGVLVPIFILVMGFSPKHAIPLSNITVFGGAIANTMLNYPKRHPHANRPLVDWDLILVMEPLTIAGALLGAFLNKV 191          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8011.16181.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.500e-12690.41protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.890e-11990.65protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical8.990e-5078.57protein (Fragment) n=2 Tax=Pinguiococcus pyrenoido... [more]
Uncharacterized4.550e-4977.68protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical5.790e-4979.63protein n=2 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Uncharacterized2.230e-4783.84protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical4.400e-4773.15protein n=1 Tax=Grammatophora oceanica TaxID=21045... [more]
Hypothetical4.590e-4673.45protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical4.930e-4675.00protein n=1 Tax=Odontella aurita TaxID=265563 RepI... [more]
Hypothetical5.090e-4672.22protein (Fragment) n=1 Tax=Proboscia inermis TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8011contigE_fasciculatus_S2_contig8011:90..1046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score372.9
Seed ortholog evalue1.2e-100
Seed eggNOG ortholog2880.D7FV46
Model size726
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.Sulfite exporter TauE/SafE
EggNOG OGs28PZK@1,2QWNB@2759
Ec32 ortholog descriptionTransmembrane protein TauE like
Ec32 orthologEc-12_005130.1
Cds size726
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842463.7102501-CDS-E_fasciculatus_S2_contig8011:89..1721696842463.7102501-CDS-E_fasciculatus_S2_contig8011:89..172Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8011 90..172 -
1696842463.7232726-CDS-E_fasciculatus_S2_contig8011:403..10461696842463.7232726-CDS-E_fasciculatus_S2_contig8011:403..1046Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8011 404..1046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8011.16181.1prot_E_fasciculatus_S2_contig8011.16181.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8011 90..1046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8011.16181.1

>prot_E_fasciculatus_S2_contig8011.16181.1 ID=prot_E_fasciculatus_S2_contig8011.16181.1|Name=mRNA_E_fasciculatus_S2_contig8011.16181.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=242bp
MSRYARPALLAGLCLSVLSLGVLTRTGDDNVFLSFGVGGGAEKENTGATA
RRWLRGEGWGDHSAGRDQGSILSRAFRRLATARAPPGHPYFTDDEQAVIF
EAAADEEEHGGHHHHGHFWHKPLHPIDGWDVTGVGLACIGLMIAAAGGIG
GGGILVPLYILVLGFDPKHAIPLSNITIFGGAITNTVLNLSKRHPAADRP
LVDWDLILVMEPLTIGGALVGSFINKVSLWWTTNNFCWRFFF
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mRNA from alignment at E_fasciculatus_S2_contig8011:90..1046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8011.16181.1 ID=mRNA_E_fasciculatus_S2_contig8011.16181.1|Name=mRNA_E_fasciculatus_S2_contig8011.16181.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=957bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8011:90..1046- (Ectocarpus fasciculatus EfasUO2)
ATGTCGCGCTATGCGAGACCAGCACTGCTCGCTGGGCTGTGTCTTTCAGT GCTGTCTCTGGGTGTTCTTACAAGAACGGGTGATGATAACGTTTTCTTGT CTTTCGGGGTCGGAGGTGGTGCGGAGAAGGAGAACACCGGAGCGACTGCG CGGCGATGGCTGCGCGGAGAGGGATGGGGGGACCACAGCGCAGGGAGGGA TCAAGGGTCTATCCTGTCGAGAGCCTTCCGTCGGCTTGCGACGGCCCGGG CGCCCCCAGGTCACCCGTACTTCACGGACGACGAACAAGCGGTGATCTTC GAAGCGGCGGCGGATGAGGAAGAACACGGCGGCCACCACCATCATGGGCA CTTCTGGCACAAGCCGCTGCATCCCATAGACGGGTGGGACGTGACCGGCG TGGGCCTGGCGTGCATCGGGCTGATGATCGCGGCCGCGGGAGGGATAGGC GGCGGCGGCATCCTCGTGCCTCTGTATATCCTCGTGCTGGGGTTCGATCC CAAGCACGCTATCCCTCTATCCAACATCACGATCTTCGGCGGGGCGATCA CCAACACGGTGCTCAACCTCAGCAAGCGGCATCCGGCCGCAGACAGGCCG CTGGTGGACTGGGACCTCATCCTGGTCATGGAGCCCCTCACGAGTACGTT GCGTGTGCTAATCGGTAGTAGCATCTCGGCCGCAGCAGCACGTGGACGTA GCACGCTAAAATTTGAACCCTGTTTGTATTACATTCATTCCGCCGCACCA TGAGGCGGTGAAACAAGCGCCGCAGCGCAGCCTAGTAATGTGTGGAAAAG TCTGTTGCTGGTTTAACCCCCCTCACCCGCGCACCCTCTTCTGCCTGTCT CGCTGCCGCGTTGGGCCTGTGCAGTCGGTGGAGCGCTGGTGGGAAGCTTT ATCAACAAGGTAAGCTTGTGGTGGACAACCAACAATTTCTGCTGGCGTTT TTTTTTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8011:90..1046-

>mRNA_E_fasciculatus_S2_contig8011.16181.1 ID=mRNA_E_fasciculatus_S2_contig8011.16181.1|Name=mRNA_E_fasciculatus_S2_contig8011.16181.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=726bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8011:90..1046- (Ectocarpus fasciculatus EfasUO2)
ATGTCGCGCTATGCGAGACCAGCACTGCTCGCTGGGCTGTGTCTTTCAGT
GCTGTCTCTGGGTGTTCTTACAAGAACGGGTGATGATAACGTTTTCTTGT
CTTTCGGGGTCGGAGGTGGTGCGGAGAAGGAGAACACCGGAGCGACTGCG
CGGCGATGGCTGCGCGGAGAGGGATGGGGGGACCACAGCGCAGGGAGGGA
TCAAGGGTCTATCCTGTCGAGAGCCTTCCGTCGGCTTGCGACGGCCCGGG
CGCCCCCAGGTCACCCGTACTTCACGGACGACGAACAAGCGGTGATCTTC
GAAGCGGCGGCGGATGAGGAAGAACACGGCGGCCACCACCATCATGGGCA
CTTCTGGCACAAGCCGCTGCATCCCATAGACGGGTGGGACGTGACCGGCG
TGGGCCTGGCGTGCATCGGGCTGATGATCGCGGCCGCGGGAGGGATAGGC
GGCGGCGGCATCCTCGTGCCTCTGTATATCCTCGTGCTGGGGTTCGATCC
CAAGCACGCTATCCCTCTATCCAACATCACGATCTTCGGCGGGGCGATCA
CCAACACGGTGCTCAACCTCAGCAAGCGGCATCCGGCCGCAGACAGGCCG
CTGGTGGACTGGGACCTCATCCTGGTCATGGAGCCCCTCACGATCGGTGG
AGCGCTGGTGGGAAGCTTTATCAACAAGGTAAGCTTGTGGTGGACAACCA
ACAATTTCTGCTGGCGTTTTTTTTTT
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