mRNA_E_fasciculatus_S2_contig80.16158.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig80.16158.1
Unique NamemRNA_E_fasciculatus_S2_contig80.16158.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig80.16158.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT41_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 1.470e-92
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1
Query:    1 ANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGMGMG 414
            ANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGMGMG
Sbjct:   94 ANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGMGMG 231          
BLAST of mRNA_E_fasciculatus_S2_contig80.16158.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI11_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 4.130e-92
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1
Query:    1 ANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGM 405
            ANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGM
Sbjct:   94 ANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGM 228          
BLAST of mRNA_E_fasciculatus_S2_contig80.16158.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU5_9STRA)

HSP 1 Score: 205 bits (522), Expect = 7.470e-62
Identity = 94/124 (75.81%), Postives = 109/124 (87.90%), Query Frame = 1
Query:    1 ANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEG 372
            A DVGANLFIGQLDP+VDEK+LYDTFSAFGFIT TPKVMRDP+TG SKGYGFVSYDGFEASD AIECM+ Q+LCNRQI VQYA+K+D+ GERHG  AERLLA+NNP + K HT+F+   G+++G
Sbjct:   94 AQDVGANLFIGQLDPEVDEKLLYDTFSAFGFITNTPKVMRDPETGASKGYGFVSYDGFEASDLAIECMNGQFLCNRQIVVQYAFKRDSHGERHGSLAERLLAANNPLRLKPHTMFASQEGEVQG 217          
BLAST of mRNA_E_fasciculatus_S2_contig80.16158.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNH8_9STRA)

HSP 1 Score: 193 bits (490), Expect = 3.250e-59
Identity = 96/146 (65.75%), Postives = 112/146 (76.71%), Query Frame = 1
Query:    7 DVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGMGMGGAPPLPPPPV 444
            D+GANLF+G LDPDVDEK+LYDTFSAFG I +TPK+MRDPDT +S+G+GFVSYD FEA+D AIECM+ QYLCNRQI VQYAYKK +  ERHG QAERLLAS+NP+K K HT F+ +   I    P A G   M M     +PPPPV
Sbjct:   99 DIGANLFLGNLDPDVDEKLLYDTFSAFGGIVETPKIMRDPDTKVSRGFGFVSYDSFEAADLAIECMNAQYLCNRQIVVQYAYKKGSNNERHGSQAERLLASSNPNKMKPHTRFAFSTPAIPQPPPMAMGMQPMMMAPVGMMPPPPV 244          
BLAST of mRNA_E_fasciculatus_S2_contig80.16158.1 vs.
Match: Splicing (factor 3B subunit 4 n=11 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8D7L6_PHYNI)

HSP 1 Score: 190 bits (482), Expect = 7.100e-58
Identity = 86/122 (70.49%), Postives = 100/122 (81.97%), Query Frame = 1
Query:    7 DVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEG 372
            DVGANLFIG LDP+VDEK+LYDTFSAFG I +TPK+MRDPDT  SKG+GFVS+D FEA+D AIECMH QYLCNRQ+ VQYA+KKD+  ERHG +AERLLA  NP+K K HT+F+   G   G
Sbjct:   96 DVGANLFIGNLDPEVDEKLLYDTFSAFGGIVETPKIMRDPDTKASKGFGFVSFDSFEAADLAIECMHGQYLCNRQVVVQYAFKKDSHNERHGSEAERLLAQRNPNKLKPHTMFAFTAGAAPG 217          
BLAST of mRNA_E_fasciculatus_S2_contig80.16158.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAQ8_AURAN)

HSP 1 Score: 192 bits (488), Expect = 8.280e-58
Identity = 88/127 (69.29%), Postives = 103/127 (81.10%), Query Frame = 1
Query:    7 DVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAA 387
            +VGANLF+G LD DVDEK+LYDTFSAFG IT+TPK+MRDPDTG SKG+GFVSYD FEASD AIECMHNQ+LCN+Q+ V YA+K+D++ ERHG QAERLLA+NNP   K H +F   PG   G   AA
Sbjct:   97 EVGANLFVGGLDVDVDEKLLYDTFSAFGTITETPKIMRDPDTGNSKGFGFVSYDSFEASDLAIECMHNQFLCNKQVQVGYAFKRDSKTERHGSQAERLLAANNPMSAKPHAMFGTGPGDAMGGGYAA 223          
BLAST of mRNA_E_fasciculatus_S2_contig80.16158.1 vs.
Match: Uncharacterized (protein n=1 Tax=Citrus unshiu TaxID=55188 RepID=A0A2H5NRF6_CITUN)

HSP 1 Score: 190 bits (483), Expect = 8.950e-58
Identity = 95/149 (63.76%), Postives = 112/149 (75.17%), Query Frame = 1
Query:    7 DVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPS--KFKVHTLFSVAPGKIEGSAPAAGGNGGMGMGGAPPLPPPPVS 447
            DVGANLFIG LDPDVDEK+LYDTFSAFG I   PK+MRDPDTG S+G+GF+SYD FEASD AIE M+ QYLCNRQI+V YAYKKDT+GERHG  AER+LA+NNPS  K + HTLF+  P  ++ +    G  GG       P+PP P +
Sbjct:  109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQVNGTVGG-------PVPPRPYA 250          
BLAST of mRNA_E_fasciculatus_S2_contig80.16158.1 vs.
Match: Uncharacterized (protein n=6 Tax=Aphanomyces TaxID=100860 RepID=W4GDM5_9STRA)

HSP 1 Score: 190 bits (482), Expect = 2.230e-57
Identity = 87/116 (75.00%), Postives = 100/116 (86.21%), Query Frame = 1
Query:    7 DVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVA 354
            D+GANLF+G LDPDVDEK+LYDTFSAFG I +TPK+MRDPDT MS+G+GFVSYD FEA+D AIECM+ QYLCNRQI VQYAYKK +  ERHG QAERLLAS+NP+K K HT F+ A
Sbjct:   98 DIGANLFLGNLDPDVDEKLLYDTFSAFGGIVETPKIMRDPDTKMSRGFGFVSYDSFEAADLAIECMNTQYLCNRQIVVQYAYKKGSNNERHGSQAERLLASSNPNKLKPHTRFAFA 213          
BLAST of mRNA_E_fasciculatus_S2_contig80.16158.1 vs.
Match: Uncharacterized (protein n=4 Tax=Citrus TaxID=2706 RepID=A0A067GIM3_CITSI)

HSP 1 Score: 192 bits (487), Expect = 2.360e-57
Identity = 96/149 (64.43%), Postives = 113/149 (75.84%), Query Frame = 1
Query:    7 DVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPS--KFKVHTLFSVAPGKIEGSAPAAGGNGGMGMGGAPPLPPPPVS 447
            DVGANLFIG LDPDVDEK+LYDTFSAFG I   PK+MRDPDTG S+G+GF+SYD FEASD AIE M+ QYLCNRQI+V YAYKKDT+GERHG  AER+LA+NNPS  K + HTLF+  P  ++ +  A G  GG       P+PP P +
Sbjct:  109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGG-------PVPPRPYA 250          
BLAST of mRNA_E_fasciculatus_S2_contig80.16158.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4C3Q0_9STRA)

HSP 1 Score: 187 bits (475), Expect = 6.230e-57
Identity = 83/118 (70.34%), Postives = 100/118 (84.75%), Query Frame = 1
Query:    7 DVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPG 360
            DVGANLF+G LDP+VDEK+LYDTFSAFG I +TPKVMRDPD+  S+G+GFVS+D FEA+D AIECMH QYLCNRQ+ VQ+A+KKD+R ERHG +AERLLA  NP K + HT+F+  PG
Sbjct:   96 DVGANLFLGNLDPEVDEKLLYDTFSAFGGIVETPKVMRDPDSQASRGFGFVSFDSFEAADLAIECMHGQYLCNRQVVVQFAFKKDSRNERHGSEAERLLAQRNPDKLQPHTMFAFTPG 213          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig80.16158.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.470e-92100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.130e-92100.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.470e-6275.81protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized3.250e-5965.75protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Splicing7.100e-5870.49factor 3B subunit 4 n=11 Tax=Peronosporaceae TaxID... [more]
Uncharacterized8.280e-5869.29protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Uncharacterized8.950e-5863.76protein n=1 Tax=Citrus unshiu TaxID=55188 RepID=A0... [more]
Uncharacterized2.230e-5775.00protein n=6 Tax=Aphanomyces TaxID=100860 RepID=W4G... [more]
Uncharacterized2.360e-5764.43protein n=4 Tax=Citrus TaxID=2706 RepID=A0A067GIM3... [more]
Uncharacterized6.230e-5770.34protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig80contigE_fasciculatus_S2_contig80:539..2507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score289.3
Seed ortholog evalue1.1e-75
Seed eggNOG ortholog2880.D8LT41
Preferred nameSF3B4
Model size453
KEGG koko:K07951,ko:K12831
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0030532,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032991,GO:0033120,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0045935,GO:0046483,GO:0048024,GO:0048026,GO:0048518,GO:0048522,GO:0050684,GO:0050685,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1903311,GO:1903313,GO:1990904
Exons3
EggNOG free text desc.RNA splicing
EggNOG OGsKOG0131@1,KOG0131@2759
Cds size453
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041,ko04031,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842461.0960991-CDS-E_fasciculatus_S2_contig80:538..7031696842461.0960991-CDS-E_fasciculatus_S2_contig80:538..703Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig80 539..703 -
1696842461.1233554-CDS-E_fasciculatus_S2_contig80:1302..14201696842461.1233554-CDS-E_fasciculatus_S2_contig80:1302..1420Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig80 1303..1420 -
1696842461.140131-CDS-E_fasciculatus_S2_contig80:2337..25071696842461.140131-CDS-E_fasciculatus_S2_contig80:2337..2507Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig80 2338..2507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig80.16158.1prot_E_fasciculatus_S2_contig80.16158.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig80 539..2507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig80.16158.1

>prot_E_fasciculatus_S2_contig80.16158.1 ID=prot_E_fasciculatus_S2_contig80.16158.1|Name=mRNA_E_fasciculatus_S2_contig80.16158.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=151bp
ANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGY
GFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERL
LASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGMGMGGAPPLPPPPVSM
*
back to top

mRNA from alignment at E_fasciculatus_S2_contig80:539..2507-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig80.16158.1 ID=mRNA_E_fasciculatus_S2_contig80.16158.1|Name=mRNA_E_fasciculatus_S2_contig80.16158.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1969bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig80:539..2507- (Ectocarpus fasciculatus EfasUO2)
GCGAACGACGTGGGAGCGAACCTTTTCATCGGGCAGCTAGACCCGGACGT GGACGAGAAGATGCTGTACGACACCTTCTCCGCGTTCGGGTTCATCACGC AGACGCCCAAGGTCATGAGGGACCCGGACACGGGCATGTCCAAGGGCTAC GGGTTCGTCAGCTACGACGGGTGAGAGAGCGAGAGGTTGAAGAGACAAGA TGGACAGTCAGGAGGGAAGACGGACAGACCGGCAGACTTACATTCAGGAG AGAAGACAGACAGACAGAAACACAGAATACAGTTCGGCAGACAGACAGAA ATACAGAAGACAGACAGACGACCAGAACACAGGAGGCAGTTAGGCCGACA GGCATGAAGGCCGACAGACAGACAGACAGACAGACAGACAACAGGTGGAT AGACAGACAGGCGGGCGGGCGGGCGGACACGCAGACAGACGAAAGAGGTG GCGTTCGAGTGTGGACGTTCTCGTGAGTCTTGGTGTATTGTTTTCCGTTG TTTTCATGGTTTTTCTCGGTTGCAAGAGCCGCTTGATGGAGAGGCGCGCC CAGCGTCCACCCAGACAAGGACGACCCCACGGACCTGCTGTGCTTTTGTT GCTGTCCTTGGGTGGATTTGGCGGGTTGTACCCCACGAGGCGGGTTGGTC TGTCTTTCTGTTGTGTCGCTGCGGCTACAGCTCGCGTGTTCACCTCACGG CCATGCTCCTGCTTGCTTCTGCGGCTGCTAGTGGTGGCAGTAGTCGGGGT GGTGGGTGTTGCCGCTGATGCGCCCGCCGCCACGGCTGCCGCGCTCCGTA GTCGGTGCTCCGGTGGTTGTTTTTTGTTGTCTCTGTCCCTCTAGTTTGCC GCTCTGCCCATGTCTTTCGATGGTGCTGCTGCCGCTGCCTTGGTGGTTGT TGGCCCCGCCACCCCTTGTGCTTTGCTGAAAACGACGAGAGGGCTTTCTG CCGATTTTTCATTCTGGAGAGCTGACACTACCCCCGTCAGTGCTGCTCCC ACTCGTCTGCTGTCATCGCCACCGCCGCCTCTGCTTACCGCTGATGGGGT GCGCCTCCGTTTAATTGCTGTTGGTGGCGGGGGTTAGGTTCGAGGCGAGC GACAAGGCGATCGAGTGCATGCACAACCAGTACCTGTGCAACCGGCAGAT CTCGGTGCAGTACGCCTACAAGAAGGACACCCGGGGGGAGCGGCACGGTG GACAGGTGACGTCGCGGTGTTAGATTGCCGCTGCCGCTGCCGCTGCCGCT GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTAGCGG TGGTTGTGTATCGGCATTTCTATCGTTTGTTTGTGGTGGCGGCGGAATTG GTTTTGATGTCATCGGTGCCCACATTCTTGCGCGGTAGGCGTAGTAGCGG TTTCGGTGTTTTTGAGTGCTTCCGATAGCACCGCCTCCGGCCCACACGCA CAAGCGGTGCTGTCCCATTGGTCGGCGGTGAAATCTGTCCCCCCACGATG CAAGCAAGCATCTTCTCGCAGGCACGCACGTTGGCCTTGAGCGCGCACAT GGCCGTGTGTCACGGCTCTGTTGGTTGCTTTCAAGACGTATTTTGTCGGT TGTGCTCAAGACGTCCCTGTTGGGTGCGAATTCAAGACCGACGCGCAATA ACCGACGGAACAAGCCCTCCCTCGCCCCCCCGGGAAATAACCAAATTCCG CGGGATGTTCTTCCCTCTGCCGCGCCTTATGCCGCGCCAACCAATATCGT TGCATCGCCCCGCCCACCCCCCCGGATGTGTGTGTGCCGTCTGGTCCGAC TCAGGCTGAACGACTCCTGGCCTCCAACAACCCCAGCAAGTTCAAGGTGC ACACCCTGTTCTCGGTGGCTCCCGGAAAGATCGAGGGCTCCGCGCCCGCG GCCGGCGGGAACGGGGGTATGGGGATGGGAGGGGCCCCGCCGCTGCCGCC TCCTCCGGTAAGTATGTAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig80:539..2507-

>mRNA_E_fasciculatus_S2_contig80.16158.1 ID=mRNA_E_fasciculatus_S2_contig80.16158.1|Name=mRNA_E_fasciculatus_S2_contig80.16158.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=453bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig80:539..2507- (Ectocarpus fasciculatus EfasUO2)
GCGAACGACGTGGGAGCGAACCTTTTCATCGGGCAGCTAGACCCGGACGT
GGACGAGAAGATGCTGTACGACACCTTCTCCGCGTTCGGGTTCATCACGC
AGACGCCCAAGGTCATGAGGGACCCGGACACGGGCATGTCCAAGGGCTAC
GGGTTCGTCAGCTACGACGGGTTCGAGGCGAGCGACAAGGCGATCGAGTG
CATGCACAACCAGTACCTGTGCAACCGGCAGATCTCGGTGCAGTACGCCT
ACAAGAAGGACACCCGGGGGGAGCGGCACGGTGGACAGGCTGAACGACTC
CTGGCCTCCAACAACCCCAGCAAGTTCAAGGTGCACACCCTGTTCTCGGT
GGCTCCCGGAAAGATCGAGGGCTCCGCGCCCGCGGCCGGCGGGAACGGGG
GTATGGGGATGGGAGGGGCCCCGCCGCTGCCGCCTCCTCCGGTAAGTATG
TAG
back to top