mRNA_E_fasciculatus_S2_contig794.16098.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig794.16098.1
Unique NamemRNA_E_fasciculatus_S2_contig794.16098.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig794.16098.1 vs.
Match: Tryptophan-rich (sensory-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNA8_ECTSI)

HSP 1 Score: 506 bits (1302), Expect = 3.130e-172
Identity = 278/300 (92.67%), Postives = 284/300 (94.67%), Query Frame = 3 
Query:   42 ITSICVAVLALVGNSSAFSFSPSAATARRDRSPTAARQQHARFAISPQALLPWTQRSNAVSREGGTAVVLKASDLPAAGXXXXXXSRPPLDLAAVAKYIAGTAAEFTIIMGLLTVMQGKLLPRLPAKWARGTVFLTFGFLAMKSRTFSLLNARRPSLAKEKEEKIERRRPDWMPPIKAFPVIWITIGVLRALSTAMASVWEALGGNLVATPIAAMVLHLSVGDTWNHINNVEKKLGVAVSGVFLVWLSVANAVYRYYQVLPKAGLVLLPSLLWISVANLLVQSIWRLNGKEPLYPPKQTS 941
            ITSICV +LAL+GNSSAFSFSPSA   RRDRSPTAARQQHARFA +    LPWT RSNAVSREGGT VVLKASDLPAAGXXXXXXSRPPLD+AAVAKYIAGTA EFTIIMGLL +MQGKLLPRLPAKWA+ TVFLTFGFLAMKSRTFSLLNARRPSLAKEKEEKIERRRPDWMPPIKAFPVIWITIGVLRALSTAM  VWEALGGNLVATPIAAMVLHLSVGDTWNHINNVEKKLGVAVSGVFLVWLSVANAVYRYYQVLPKAGLVLLPSLLWISVANLLVQSIWRLNGKEPLYPPKQTS
Sbjct:    2 ITSICVTLLALLGNSSAFSFSPSATALRRDRSPTAARQQHARFANAQ--ALPWTPRSNAVSREGGT-VVLKASDLPAAGXXXXXXSRPPLDVAAVAKYIAGTAGEFTIIMGLLALMQGKLLPRLPAKWAQRTVFLTFGFLAMKSRTFSLLNARRPSLAKEKEEKIERRRPDWMPPIKAFPVIWITIGVLRALSTAM--VWEALGGNLVATPIAAMVLHLSVGDTWNHINNVEKKLGVAVSGVFLVWLSVANAVYRYYQVLPKAGLVLLPSLLWISVANLLVQSIWRLNGKEPLYPPKQTS 296
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BLAST of mRNA_E_fasciculatus_S2_contig794.16098.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZE4_9STRA)

HSP 1 Score: 192 bits (489), Expect = 8.300e-53
Identity = 107/214 (50.00%), Postives = 145/214 (67.76%), Query Frame = 3 
Query:  303 PPLDLAAVAKYIAGTAAEFTIIMGLLTVMQGKLLPRLPAKWARGTVFLT---FGFLAMKSRTFSLLNARRPSLAKEKEEKIERRRPDWMPPIKAFPVIWITIGVLRALSTAMASVWEALGGNLVATPIAAMVLHLSVGDTWNHINNVEKKLGVAVSGVFLVWLSVANAVYRYYQVLPKAGLVLLPSLLWISVANLLVQSIWRLNGKEPLYPPKQ 935
            PP+   A+  +I  TA +F  I+  +  M+   L    +K A  ++FL    F F++++SR FS+L+  RP++A E  ++  R+RP WMPP KAFPVIWI+IGVLR +++++  V+E     L++  + A VLHLSVGDTWN I NVE + G +V GVFLVWLSV NAV  Y Q LP AG VL PS +WI++AN+LV SIWRLNG EPLYP K+
Sbjct:   23 PPMQWGALGTWILATALQFATIVAFMYGMEKAFLRFNLSKQA--SIFLVRAFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSL--VYETTN-TLLSPALLAFVLHLSVGDTWNTITNVEDRQGASVPGVFLVWLSVVNAVRMYAQTLPLAGKVLAPSAVWITIANVLVISIWRLNGAEPLYPFKK 231
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BLAST of mRNA_E_fasciculatus_S2_contig794.16098.1 vs.
Match: Hypothetical (protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3H3_9STRA)

HSP 1 Score: 188 bits (478), Expect = 3.590e-50
Identity = 103/212 (48.58%), Postives = 138/212 (65.09%), Query Frame = 3 
Query:  309 LDLAAVAKYIAGTAAEFTIIMGLLTVMQGKLLPRLPAKWAR-GTVFLTFGFLAMKSRTFS-LLNARRPSLAKEKEEKIERRRPDWMPPIKAFPVIWITIGVLRALSTAMASVWEALGGNLVATPIAAMVLHLSVGDTWNHINNVEKKLGVAVSGVFLVWLSVANAVYRYYQVLPKAGLVLLPSLLWISVANLLVQSIWRLNGKEPLYPPKQT 938
            +D +A+  YI  T+ +  +I   L V    +   +  K A+ G V   F F+++KSR FS  L+  RPSL  EK  + +R+ P W PP  AFP IW+TI  LRA S+ M  VWEA    L+  P+ + +LHLS+GDTWN INNVE+++G +VS V LVWLSV NAV  Y+ V   AGLVLLPS +WIS+A +L+ SIW LNGKEPL+P K++
Sbjct:  106 VDWSAIGLYIGATSVQIGLISLFLKVADFVMEQYISNKLAKKGIVIAFFAFMSLKSRVFSPFLDNSRPSLKSEKSNRQKRKTPSWTPPPIAFPFIWLTIACLRATSSTM--VWEAKNCTLLNAPVLSFMLHLSIGDTWNCINNVERRMGASVSAVILVWLSVINAVRMYWGVSKTAGLVLLPSAIWISIATVLITSIWNLNGKEPLFPVKKS 315
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BLAST of mRNA_E_fasciculatus_S2_contig794.16098.1 vs.
Match: Hypothetical (protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CF46_9CHLO)

HSP 1 Score: 182 bits (463), Expect = 3.760e-48
Identity = 115/275 (41.82%), Postives = 157/275 (57.09%), Query Frame = 3 
Query:  147 ARQQHARFAISPQA-LLPWTQRSNAVSREG-GTAVVLKASDLPAAGXXXXXXSRPPLDLAAVAKYIAGTAAEFTIIMGLLTVMQ----------GKLLPRLPAKWARGTVFLTFGFLAMKSRTFSLLNARRPSLAKEKEEKIERRRPDWMPPIKAFPVIWITIGVLRALSTAMASVWEALGGNLVATPIAAMVLHLSVGDTWNHINNVEKKLGVAVSGVFLVWLSVANAVYRYYQVLPKAGLVLLPSLLWISVANLLVQSIWRLNGKEPLYPPKQ 935
            A QQ  R A+S  A   P  +R+ A    G G +V + A  LP             +D   V  Y+  T  +F +I   L  +           G +   LPAK     VFL F F+A +SR FS L+ RRP+L  E +E  ER+RP WMPP  AFP+IW TIG+LRA S+ +  VW+ALGG  +  P+   + HL +GDTWN INNV+K+ GVA   +  V  SV +A + Y+QV  +AG++L PS +WIS+A+ LV SIW+LN ++PLYP K+
Sbjct:   53 ASQQRVRAAVSRAAPRAPVARRTGAPLLPGRGVSVGVVARGLP-----------DDVDWGQVQGYVYATVVQFGLIACTLRALDFAFPKLLGVLGNVNSALPAKAEGVAVFLFFLFMAFRSRIFSPLDNRRPTLKGESKEIAERKRPAWMPPPLAFPIIWSTIGILRATSSLL--VWKALGGKFLVWPLMVFLFHLCIGDTWNSINNVDKEYGVATLSMVFVVGSVYSACFSYWQVSQRAGMILAPSCVWISIASFLVFSIWKLNDRQPLYPVKK 314
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BLAST of mRNA_E_fasciculatus_S2_contig794.16098.1 vs.
Match: Hypothetical (protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0WK81_9CHLO)

HSP 1 Score: 181 bits (460), Expect = 6.320e-48
Identity = 103/210 (49.05%), Postives = 129/210 (61.43%), Query Frame = 3 
Query:  312 DLAAVAKYIAGTAAEFTIIMGLLTVMQGKLLPRLPAKW---ARGTVFLTFGFLAMKSRTFSLLNARRPSLAKEKEEKIERRRPDWMPPIKAFPVIWITIGVLRALSTAMASVWEALGGNLVATPIAAMVLHLSVGDTWNHINNVEKKLGVAVSGVFLVWLSVANAVYRYYQVLPKAGLVLLPSLLWISVANLLVQSIWRLNGKEPLYPPK 932
            D  AV KYIA TA E   I   L   Q   L  L A     A+  V + F  LA +SR FS LNA RP +A E++ K ER+RP W PP   FP++WI++G LR+LST M     A  G +V   I A+V HLS+GDTWN INNVEKKLG A  GV  V  S  N V +YY V+P AG V+ P  +W+++A+ LV +IW +NGK+PLYP K
Sbjct:   87 DFGAVVKYIAATAFEVGAITTALFAAQKFCLGNLHATSLGAAKAIVAVMFFMLAFRSRVFSPLNASRPKIANERKAKQERKRPSWTPPAVVFPLVWISMGFLRSLSTMMVF---ATTGTVVHPAIIALVAHLSIGDTWNSINNVEKKLGAAAVGVLFVVSSAYNVVAQYYNVIPTAGYVIAPLAVWLTIASALVWNIWAINGKQPLYPTK 293
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BLAST of mRNA_E_fasciculatus_S2_contig794.16098.1 vs.
Match: Uncharacterized (protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1JGW3_GUITC)

HSP 1 Score: 177 bits (449), Expect = 6.280e-47
Identity = 91/210 (43.33%), Postives = 135/210 (64.29%), Query Frame = 3 
Query:  309 LDLAAVAKYIAGTAAEFTIIMGLLTVMQ--GKLLPRLPAKWARGTVFLTFGFLAMKSRTFSLLNARRPSLAKEKEEKIERRRPDWMPPIKAFPVIWITIGVLRALSTAMASVWEALGGNLVATPIAAMVLHLSVGDTWNHINNVEKKLGVAVSGVFLVWLSVANAVYRYYQVLPKAGLVLLPSLLWISVANLLVQSIWRLNGKEPLYPPK 932
            +D A V  +   T  E  ++   +  +Q  G  LP +  K       L F  +A+KSR FS+L+A RP++ + +E K    RP W PP   FP++W TIG+LR +S+ +  VWEA+G  ++  P+ AM+ HLS+GDTWN+INNVE++ G AV+GV  VW SV    Y Y+Q +P AG++L PS+LW+S+A++L+ +IW+LNG EP+ P K
Sbjct:   53 VDYAKVGTWFGATVVEVALLSAAMFAVQTIGGYLPPIGYKCL---AILFFASMALKSRIFSILDASRPTMGEVQETK----RPSWTPPPIVFPIVWSTIGILRTVSSVV--VWEAVGRQMLVLPLIAMMTHLSIGDTWNNINNVERRKGSAVAGVAFVWTSVVTCTYLYWQTIPLAGMILAPSVLWLSIASVLIFNIWKLNGYEPILPYK 253
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BLAST of mRNA_E_fasciculatus_S2_contig794.16098.1 vs.
Match: Tryptophan-rich (sensory protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RD28_9CHLO)

HSP 1 Score: 178 bits (452), Expect = 1.170e-46
Identity = 101/212 (47.64%), Postives = 132/212 (62.26%), Query Frame = 3 
Query:  312 DLAAVAKYIAGTAAEFTIIMGLLTVMQGKLLPRLPAKWARGTVFLTFGFLAM--KSRTFSLLNARRPSLAKEKEEKIERRRPDWMPPIKAFPVIWITIGVLRALSTAMASVWEALGGNLVATPIAAMVLHLSVGDTWNHINNVEKKLGVAVSGVFLVWLSVANAVYRYYQVLPKAGLVLLPSLLWISVANLLVQSIWRLNGKEPLYPPKQTS 941
            D  AV  YI GTA +F I   +L  +Q        ++    T  +   FLAM  +SR  S L+  RPS + E +E    +RP WMPP   FP++W TI VLR++ST M  VWEA G +L+  PI+  VLHL VGDTWN INNVE++ G A   V LVW +  NA+++YYQV P AG VL P  +W+SVA++LV SIW +NGKE L+P K+ S
Sbjct:   99 DWGAVLTYIGGTATQFLIFSIVLRGLQFATSTGPLSQGIAPTATIAIFFLAMAVRSRILSPLDNSRPSRSSESKEISAGKRPSWMPPPVVFPIVWSTIAVLRSVSTTM--VWEASGRDLLIAPISWFVLHLCVGDTWNTINNVEQRKGTAAVVVLLVWATAXNAIFQYYQVSPTAGYVLAPLAVWLSVASVLVWSIWAINGKENLFPMKEAS 308
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BLAST of mRNA_E_fasciculatus_S2_contig794.16098.1 vs.
Match: Hypothetical (protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S4Y6_9CHLO)

HSP 1 Score: 176 bits (446), Expect = 4.090e-46
Identity = 102/224 (45.54%), Postives = 131/224 (58.48%), Query Frame = 3 
Query:  309 LDLAAVAKYIAGTAAEFTIIMGLLTVMQ-------------GKLLPRLPAKWARGTVFLTFGFLAMKSRTFSLLNARRPSLAKEKEEKIERRRPDWMPPIKAFPVIWITIGVLRALSTAMASVWEALGGNLVATPIAAMVLHLSVGDTWNHINNVEKKLGVAVSGVFLVWLSVANAVYRYYQVLPKAGLVLLPSLLWISVANLLVQSIWRLNGKEPLYPPKQTS 941
            LD+AA+ KY      +  I+ G L  +Q             G +     AKW     FL     ++KSR FS L+A RP+L  EK+   +R+RP WMPP   FP++W TIG+LR +S+ M  VWEA G +  A P+    LHL+VGD WNHINNVE++ GVAV GV     S   AV  YY     AGLVL PS +WIS+A+LL+ SIW LNG++PLYP K  S
Sbjct:   60 LDVAALGKYAGAITLQTGIMSGALWGLQQASSALAASESLPGGVEGADAAKWLVTAFFLV---TSIKSRIFSPLDASRPTLKGEKKAMSDRKRPSWMPPPVTFPIVWSTIGLLRGISSVM--VWEACGRDATALPLVVFCLHLAVGDCWNHINNVERRAGVAVPGVLCCLASCVAAVAAYYNTDTTAGLVLAPSAVWISIASLLIYSIWDLNGRDPLYPTKGES 278
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig794.16098.1 vs.
Match: Hypothetical (protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JAC1_9EUGL)

HSP 1 Score: 178 bits (452), Expect = 6.220e-46
Identity = 102/210 (48.57%), Postives = 132/210 (62.86%), Query Frame = 3 
Query:  321 AVAKYIAGTAAEFTIIMGLLTVMQGKLLPRL-----PAKWARGTVFLTFGFLAMKSRTFSLLNARRPSLAKEKEEKIERRRPDWMPPIKAFPVIWITIGVLRALSTAMASVWEALGGNLVATPIAAMVLHLSVGDTWNHINNVEKKLGVAVSGVFLVWLSVANAVYRYYQVLPKAGLVLLPSLLWISVANLLVQSIWRLNGKEPLYPPKQ 935
            AV +YI  TA ++ +I+G L V+  K+ P L     PA   +  V L F F A+KSR FS L+  RP++AKEK+   ER RP WMPP   FP++W TI VLR ++  M  VW A G  L+  PI A  L LS+GDTWN INNVE+++G A  GV +VWLS       YY   P AGLVL    +W+++A +LV SIWRLNG EP+YP K+
Sbjct:  165 AVLRYIGATAMQWGLILGTLWVLD-KVGPYLVGLGAPAAVPQLLVTLFFAFTALKSRVFSPLDNSRPTVAKEKQAIDERIRPSWMPPPLVFPIVWTTIAVLRTVAGVM--VWLAAGKTLLVAPIMAHFLMLSIGDTWNTINNVERRMGTAAFGVCVVWLSALVTNIMYYNFYPTAGLVLAFQQVWLTIATVLVNSIWRLNGAEPMYPFKK 371
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig794.16098.1 vs.
Match: Tryptophan-rich (sensory-like protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N832_MICPC)

HSP 1 Score: 178 bits (451), Expect = 7.020e-46
Identity = 108/241 (44.81%), Postives = 144/241 (59.75%), Query Frame = 3 
Query:  309 LDLAAVAKYIAGTAAEFTIIMGLLTVMQGKLLPR-LPAKWARGTVFLTFGFLAMKSRTFSLLNARRPSLAKEKEEKIE------------------------RRRPDWMPPIKAFPVIWITIGVLRALSTAMASVWEALGGNLVATPIAAMVLHLSVGDTWNHINNVEKKLGVAVSGVFLVWLSVANAVYRYYQVLPKAGLVLLPSLLWISVANLLVQSIWRLN-----GKEPLYPPKQTS 941
            +D  A+ +Y A TAA+  +++     + G L    LP K+    VF+ F F A+KSRTFS LNA RP LA E+  K+E                        R+RP WMPP  AFP+IW +I VLRA S+ +  V+ ALGG L    I AM LHLSVGDTWN+INNVEK+LG AV GV  V LSV N V++Y+ V  KAG ++ PS +WI++A +LV +IWR+N       EPL P ++++
Sbjct:  120 IDWTALGRYFAATAAQCALLVWFTLWLNGGLNNSGLPMKYQNVIVFVWFAFNALKSRTFSPLNASRPKLADERAAKVEARRTGPHTTAFALCTPILKDFALRRKRPSWMPPGIAFPIIWTSIAVLRAASSVV--VFNALGGTLNHPAIFAMFLHLSVGDTWNNINNVEKRLGTAVLGVGCVLLSVYNLVFQYFSVSAKAGYLIAPSAVWITIATVLVYTIWRINPGEDGALEPLLPRRRSA 358
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig794.16098.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Tryptophan-rich3.130e-17292.67sensory-like protein n=2 Tax=Ectocarpus TaxID=2879... [more]
Uncharacterized8.300e-5350.00protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]
Hypothetical3.590e-5048.58protein n=2 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical3.760e-4841.82protein n=1 Tax=Chloropicon roscoffensis TaxID=146... [more]
Hypothetical6.320e-4849.05protein n=1 Tax=Ostreococcus mediterraneus TaxID=1... [more]
Uncharacterized6.280e-4743.33protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=... [more]
Tryptophan-rich1.170e-4647.64sensory protein n=1 Tax=Tetraselmis sp. GSL018 Tax... [more]
Hypothetical4.090e-4645.54protein n=1 Tax=Chlamydomonas leiostraca TaxID=103... [more]
Hypothetical6.220e-4648.57protein n=1 Tax=Eutreptiella gymnastica TaxID=7302... [more]
Tryptophan-rich7.020e-4644.81sensory-like protein n=1 Tax=Micromonas pusilla (s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig794contigE_fasciculatus_S2_contig794:4480..11259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score511.1
Seed ortholog evalue3.4e-142
Seed eggNOG ortholog2880.D7FNA8
Model size2336
KEGG koko:K05770
KEGG TC9.A.24
KEGG Pathwayko04080,ko04214,ko04979,ko05166,map04080,map04214,map04979,map05166
Hectar predicted targeting categorychloroplast
Exons7
EggNOG free text desc.TspO/MBR family
EggNOG OGs2S3PT@2759,COG3476@1
Ec32 ortholog descriptionTspO/MBR-related protein
Ec32 orthologEc-24_000050.1
Cds size912
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig794.16098.1prot_E_fasciculatus_S2_contig794.16098.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig794 4512..9867 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842454.4009368-UTR-E_fasciculatus_S2_contig794:4479..45111696842454.4009368-UTR-E_fasciculatus_S2_contig794:4479..4511Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig794 4480..4511 +
1696842454.4967945-UTR-E_fasciculatus_S2_contig794:9867..112591696842454.4967945-UTR-E_fasciculatus_S2_contig794:9867..11259Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig794 9868..11259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842454.4147947-CDS-E_fasciculatus_S2_contig794:4511..48101696842454.4147947-CDS-E_fasciculatus_S2_contig794:4511..4810Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig794 4512..4810 +
1696842454.4249277-CDS-E_fasciculatus_S2_contig794:5613..56531696842454.4249277-CDS-E_fasciculatus_S2_contig794:5613..5653Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig794 5614..5653 +
1696842454.4463172-CDS-E_fasciculatus_S2_contig794:6565..66691696842454.4463172-CDS-E_fasciculatus_S2_contig794:6565..6669Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig794 6566..6669 +
1696842454.4576879-CDS-E_fasciculatus_S2_contig794:7831..79911696842454.4576879-CDS-E_fasciculatus_S2_contig794:7831..7991Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig794 7832..7991 +
1696842454.468246-CDS-E_fasciculatus_S2_contig794:8284..84251696842454.468246-CDS-E_fasciculatus_S2_contig794:8284..8425Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig794 8285..8425 +
1696842454.4795907-CDS-E_fasciculatus_S2_contig794:9310..94041696842454.4795907-CDS-E_fasciculatus_S2_contig794:9310..9404Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig794 9311..9404 +
1696842454.4883914-CDS-E_fasciculatus_S2_contig794:9793..98671696842454.4883914-CDS-E_fasciculatus_S2_contig794:9793..9867Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig794 9794..9867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig794.16098.1

>prot_E_fasciculatus_S2_contig794.16098.1 ID=prot_E_fasciculatus_S2_contig794.16098.1|Name=mRNA_E_fasciculatus_S2_contig794.16098.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=304bp
MTTITSICVAVLALVGNSSAFSFSPSAATARRDRSPTAARQQHARFAISP
QALLPWTQRSNAVSREGGTAVVLKASDLPAAGGGGGASSRPPLDLAAVAK
YIAGTAAEFTIIMGLLTVMQGKLLPRLPAKWARGTVFLTFGFLAMKSRTF
SLLNARRPSLAKEKEEKIERRRPDWMPPIKAFPVIWITIGVLRALSTAMA
SVWEALGGNLVATPIAAMVLHLSVGDTWNHINNVEKKLGVAVSGVFLVWL
SVANAVYRYYQVLPKAGLVLLPSLLWISVANLLVQSIWRLNGKEPLYPPK
QTS*
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mRNA from alignment at E_fasciculatus_S2_contig794:4480..11259+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig794.16098.1 ID=mRNA_E_fasciculatus_S2_contig794.16098.1|Name=mRNA_E_fasciculatus_S2_contig794.16098.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6780bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig794:4480..11259+ (Ectocarpus fasciculatus EfasUO2)
CACCGCAGCACTGCTTACACACACGCCCAATCATGACAACGATCACCTCG
ATTTGCGTGGCGGTGCTCGCACTTGTCGGAAACTCGTCGGCGTTCTCCTT
CTCTCCTTCCGCCGCAACCGCACGCCGTGATCGTTCGCCAACGGCAGCTC
GGCAACAACATGCTCGATTTGCCATCTCGCCCCAGGCACTTCTGCCTTGG
ACTCAACGAAGCAATGCCGTCAGCAGAGAGGGAGGCACTGCTGTCGTGCT
GAAAGCATCAGACCTTCCTGCAGCTGGCGGTGGGGGCGGCGCCTCGTCCC
GCCCCCCTTTGGATTTGGCTGCTGTGGCGAAGTGAGTGTGTTGCAGTCAG
CTGTGACCTCTCCATCGGCAACACATGTTTATGTACAACCAACCGCTGTT
CATCGACTTGCAGACCTGAAAGTTGTACAACCAAGAAGCGCTTGGTCTTC
GTATGCATAGCGTACGGAATTTTCCTCTGTTGTTGTGTTGTTGTTGTGGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATCA
AGAAGACGTGGCATCGTGGTGTCTGGTGGGATCTGTACCTGAGGAATGTG
CTGTATGATACACGCATCACCTACAAGTGCAGGTCCGAGGCACATCATCA
TCAGACTTGTAGACAACAGTAGTACACCGGTGTACGCGGCCTACAATACT
GTCTGGTTGCCTCACGCCGACCCTCCCTCTTCCCTTCACCCCACCTCTCG
TTCTCTCTCTCGGATTCCGATCTCGTACATACGAAACGCCATGTTGCATT
AGGTTTTGGGTGTGGAGTGTGGAGGCTGGTTGCGAACAGTGCTCCGTATG
CGTGTACAAGCAACAGCATCCCATTGATGCAGCGTTCATGCTTGCAATGA
GCTTTGCTCTTGGCAAGATTTAGGGGGGGTATCCGTCGATTGCTTGCGAC
ACACAAAACCTCATCTACAGTACAAGTAGTATGTATTGGAGCCAGGACAC
CTAATCCGCCGACTTCCTCCCAAATGTACAAGCCAGCGCCACCTTTTATT
TCTGAACGTCGGTTGTTCTACAATACCGTGCCTTTGTTCTCCCTGCTACC
TGGGAACCATCATGTGATGTTCGTGACCTCAAAGGTACATCGCTGGGACG
GCTGCGGAGTTCACCATCATCATGGTAAGAAATGTACCACATTACACAGA
AGTCGGAGAGCAAAACCGCTTTCTCTTCTCACCACGCCAACACGTAACGC
TGGTCTGGAACCATGCCGTGCACACCGCACTTCCATCGTAACCGGAGTGG
TTCGGCAGCAGGCTATCTAGATACAGCGGAGTGAAACGAGTTACAGTAGT
GTCGAGGAGGGCTTGCTCTAACGAGAATGGGCCTTCTTGCTTTTGACGCG
TGACGAAATTGTCACCGACGAGTCCACTTGCGTGTCGACTGCAACTCGGA
TGGCGTTAACACATGTGACATTCGTACAGTATTGTACAGCTCGGTTTGGT
TGGATATCTGCAGCAGATTGCATAACACCTTTTTCACGTGTTTGAACAAG
TATCAGAGGGGATTTCCCCTTGTCCAGGATGTACTTCTATGTTGCTCCGC
TGTCGCACTTACTTACGACGCGTATGCGGCTCAACTTTCAAGACCATCAT
ATGCTGTTCCACCCAAGGTTGCTGATTCGCTCTCTTGCCGTTGATTTTTG
TCCATGCTGAGTGAAGCTAGGAGTGCTTTGTTTCCTTTCGGTTGCCTGTC
CTAGGGCTTGCTGCGTAACCCAAAACAACACCCGACGGTATGTTGCGGGG
AACAACCAGTGCAATCTCTTGGCACCGTTGTTGATGTTTCAGACGATGGT
TTTGATCCACGCAGGCTTCCTACCCGGCCGGTCTTCTTTTGTGTTTGTTA
CGCCTCTCCCTCTCAGGTCTACGGCCGCCTAGAAATATCCCCTTCCCTCG
TTTTTGCATCACCGCTATGTATCGTATCCAGACTGTGCGTTGCATATCTC
ATCCATGAACACATTCTTACGAACACATGTTGTCGATACCTTTTACGTCT
TCTTCGCGTTTTCTTTGTTGGCGGTTCGCACCACAGGGGTTGCTGACGGT
GATGCAAGGGAAGTTGCTCCCGCGCCTACCCGCAAAATGGGCAAGAGGGA
CCGTGTTTCTCACGTTCGGCTTCCTAGCCATGAAATCCAGGTAACTTGTC
TTGTTATGGTTATCGCTGTTCCATTTTCCCGATGGGTTGTGGCATTGGCC
CTGCCAACTTTCCTGCATGTTGTTGCTAGCTTCCGATCGCTGTGTCATGT
TTACTACCTCTTGAACTGCGCTCTAAGCTTTCTTGCGGTGTCTGGTGCCT
AGGGTTGAGTATGGTGTGGTTTGGTCCTATGCTCTACGTTTTTTCGTGTA
TATCGCGGTCATCATGTACAAGCATCTACACCCCGTGGTGTTCAGTTTAC
TGATGATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTC
TTGACATTGTAAACCATCCCGGTCTCTCTATCCAGTACCTCCTTCTGTCT
CAATCCCTCCGTACTAATCCAGCACTTGACTCGGCCAATTTCCGTGGTCA
CAGGCGAACGTACCTAGAAAAGGTATACCAAAATATTAATGGACCCCAAG
GGTCAGCAGAGCGATAAAATACAAGAAAACGAAAAATCAGGAAACAAATA
AATAAATAAATAGTGGAACGGCCGCACCACCAGCCTGGGGGGTAGCCTCC
CGCTACATGGAGGCAGGCCGACGGCCAAAGGAAGGGGCGGGGGGAGCATT
TTTTTCAGCGCATCGACCAAGCTACATCCGCCAGCGTGCCATTTTCCATC
ATATAGTGCGCAGGAGACCACCGCTTTGAGCCTCCCGCATTCTGTTGAGT
GGTGGAGAACGGACTTCGGGTTTTGAACCCGTGAAAGCCCGTATGGGCGC
GGCATCGGGCTTGTGGCGGGTTGGCCAATATGTCGATGCAGGAGGACGTG
GCGTTGGTGGAGTAGGCAGAAGTAGGCGTGCGCACTCTAAGTTTTCTATG
CTACTGTCGTCTCCCGCCGAACGCCCCCCCCCCCCCCCCCTCCCCGCAAA
ACAGTTTGTTTTCTCTCCATCTCTCAACCTAAGGCAAGCACCGCAGTACG
GTCGTCGAGAAACAACGAATACCTCCTGTGTGACCTACCTTCCGTGTGAC
CCCGTCTCTAGCACCTGAAACGGGCGCCAAAAGATGTAGAATCTAATGTT
CATATTTGATGGGGCGACTCTTACACCTTGTTTATCACCCAAAGCAGCTG
CCCAGAAGCGGAATCTCGTATTCTTATACCCCCCCCGCATCTTGTCCCAC
AGAACCTTCAGCTTGCTGAACGCGCGTCGTCCGTCCCTGGCTAAGGAGAA
GGAGGAGAAGATCGAGCGCCGCCGTCCCGACTGGATGCCACCTATCAAGG
CGTTCCCCGTCATCTGGATCACTATTGGCGTGCTGAGGGCTCTTTCCACC
GCCATGGCGAGTGTGAAGTTGACATTCCGTCAATGGCATCGTTCGTGTGG
AAGGGTCTCTGTCGTACATGATTGCATGATTGTGTTCGGGCAGAAGTCGA
CACTCTGCTTCCGCCGTGCCTACCCCGTGGGATACGGACCTCTGTGGAGC
TCGGTACCACGAGAAAACTGCTTCAGATGGTGCAAGTTGAATCGAATACG
ACTGATATAGCCCGTGGATGGAACGGTCGCTCTTGCTGAAGAACGTTCAG
AAGCTGCACGAGTGTAGTAAGTTTGACGTACGTGCTTTCGTTGACTGTTG
GTCAGGTGTGGGAGGCTCTCGGAGGCAATCTTGTGGCGACTCCGATCGCG
GCCATGGTGCTTCACCTGAGCGTTGGCGACACGTGGAACCACATCAACAA
CGTCGAGAAAAAGCTCGGAGTGGCTGTGTCGGGTGTCTTCCTGGTGGTGA
GCAAGACAAGGCGGCTGTGGTGTGCTCTTTTTTACTTATAGAAAGGTTCT
CTTCTTGTTGCAGACTGTCTCGCGTTACGTGCCGGCTTTGATAAAAGTGT
TGTGTGTAGTCTCGTTGAATCGTGGTTGTGTTTGTTCTGTAGTGTTTTTT
TCTCTCCTGCACCGGGGCCTCCCTCGTGTAGGTATGTTCATCACCAGGGA
GACGGCCGATACAGCCACTCCGAACCTCTGCTCGGCGTTGTTGATGTGGC
TCCACGTATCGCCAACGCTGATTCCTTTCGCTTTTTTTTGCAATGCCATG
GTCGGGGAGAAAACACCAAAGAAGCCTGAAGACACGAAACAAAGGCAGTA
GTGAAAGGTTCGCGGACAAATCGAAGGCCATTCCCACAGCATGGCATCAA
AAAGCGTATTGACATATGCATACGACCAGATGCGTATGCACGGCAGAATG
GCGACTCTCCCTCGATACGGAACTAACCCTAATACCCGTGATCCAAGGGT
CCTCCCGAACAGTTGCTTGCGTTCCTAAGGAACCTGGATCTATGTTTGAA
AGCCCAACGAATACCACAAGAGTAGTCGGAATATGACGACGAGATACGAA
CGGCGAAATTGTTTCACACGTCCGCTGCATTGCAGTGCCTGTTTTTCGGG
TGACGGGTTTGTCCTCTCCCTACAAGACGCCAAGCAGTACAGACATACGG
CGAATGCTTTGTCCGCATTCAAATGCCTCATTTACCTTGTGTTGACTGCG
ATTGAAACGATACATTCCGGACCGCACTCACGTACGTATCACATACATGT
CGGTGGGTATTCGCCCAAAAGGCGTCGACACTCGTCGTTCACCAGTGCCT
AACTCTCGTATTCTGTCTGTTCTTTTTGCAGTGGCTGAGCGTCGCGAATG
CAGTGTACCGCTACTACCAAGTGCTGCCCAAGGCTGGCCTGGTGCTCCTG
CCCAGTCTTTTGTGGATATCCGTCGGTAAGGCTACAAGCTATCAAGTGCT
GGTGCAGATAACTTGGCTAGTGAGAATGTGGCCATTTGCGCATATGCTGT
CGAGAAAAACGGATGAAAGTAGTTTATTGAAGTTCAGCACTTATTAGTAG
GTCCGGCGAGACAGGCTGACACAAAGCGGCAAACATGGCCCCCCGCTCTG
TACGAAACGAACGGGCATAGCTGGGGTCCTAAAGAACCCAGGGGAAAATG
GAAAATGATTCCTCACTTGACATGTGTTTTGCGAATCCCTTGACACCCTT
GCTCGCGTCAGCATGCAAAAGGTTCCAGGTAGGCCTCTCAATAAGACCGG
GCATCGTTCACCATCGACAACCACCCGTCGTTTTCCGCTTGTCTACTCCC
AACCCAAAACTCAGCGAACCTGCTTGTGCAGTCCATCTGGCGCCTCAACG
GAAAGGAGCCCCTCTACCCACCCAAGCAAACCTCCTGAAGGCCTCCTCCT
TACCAACAGACCACCCCACCAAGCCGGAGGTGAGGTTTCGTGGACAAAAG
GAGACTGTTGGCATGCCGTGATGGGCCGCTATCCACAATAACCGTGCAGG
CTCGGGGCTTCACGAGGGAGAGAGAAGGGTCAAGCAAGAGTGATACACTC
TCCATTGGCGGCGGAAGTAACGGGGGATGGCCCTCATTCGGTGTTGCTTG
TTATATTACATTAGGTTACTTGGATAAATACGGTGTATTGGCGGTGCCAT
CGGAACTTAGGCAGACGGCGGAACAAAGGTGTTAGACCAGCCAGCCCCTT
TTTGCTGAGGCAGAGGTGTGCCCCACCACCATGCCCCGGAGAATCCCCGG
AGCACGCTGGGCTGTCACGATGCCATTTGCCGTTGCATAGATGGCCCTCG
AGGATCTGCACGGGCCGTAGCACGGTCGTGGAGTTGGTCTACCTGTGGGT
TTGGCCTACTTTTTGGGCACGAACGAGGCAAAGCTGACAGTGTTGCGTTT
ATCTTTATGGCGGCGGGTGGGGGGTATTGAGTTGTTTAGCCTTCTCAATA
CTTGTTGAGTGATAGATCGAATGATGCGCTGCATGTTTCGCGTGTAAATA
GTTCCTATCATGCGGGACTGGATGGTGTTTTCTTGTTGACGCGTGCCTGG
TGGTTTTGTACAAATGGTGTGCGCGGCTTTTTCGAAAGTGGGGGTACGAA
GAGAGGCACACGTTACGTATATACACTCGCGTGACTTCTTGGTGTTATGA
ACGCGTTGATTCATACCACCTGGTGCTCAATGGCGTGAGCTCCTGCGCTG
TTGATAGATTGATTCGTGTTCGCGTGTTGCAAGTTGTGCAACTTCGAGTC
AATCCACAAAGTTAGCTAAAGTTAGGATGCGGATGCATGCGTGCTAGGAG
AAAGCCGCCTGCGTCCGCCTTTTTCTGGGAGCTGTAGGTCCCCGAACCGT
GCGAAGTGATTCTGCCACTGCACCGAGGCTCTCAGGACGGTCAATCGCTG
CGATTGCCTTCAAAACGCGACGTTGCGATAACCTGTAGTTTCCTGATTTT
GGAGTATCCTGGATGACCCTTTTCTTTTTTCGAATTGGGCCCAATGGTAC
GACTGCAGCGGCACGTTCATCCCGACAGCTCGGGTGCGGTAGCCAGGGCC
TGCAGTGTTTGCCCGTGCACTGCCATCGTCCAAAAGAGAGAGAAACGTGC
CCGCGGTTTTCTGGATGGTGGTATAGAACAAAGGGAATTGAAAGAAGGTG
GCCGCAAGTTACCAATCGGTTGCTTTGAGAAAGATCAATGGATGGGCATC
ATCAGAGCGCAGCCGGTATACCGTATTCGAGTCTCTCAGATCCCCTCACA
GCAATGCGGTGAGGCGGTGCGTCGCGCAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig794:4480..11259+

>mRNA_E_fasciculatus_S2_contig794.16098.1 ID=mRNA_E_fasciculatus_S2_contig794.16098.1|Name=mRNA_E_fasciculatus_S2_contig794.16098.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=912bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig794:4480..11259+ (Ectocarpus fasciculatus EfasUO2)
ATGACAACGATCACCTCGATTTGCGTGGCGGTGCTCGCACTTGTCGGAAA
CTCGTCGGCGTTCTCCTTCTCTCCTTCCGCCGCAACCGCACGCCGTGATC
GTTCGCCAACGGCAGCTCGGCAACAACATGCTCGATTTGCCATCTCGCCC
CAGGCACTTCTGCCTTGGACTCAACGAAGCAATGCCGTCAGCAGAGAGGG
AGGCACTGCTGTCGTGCTGAAAGCATCAGACCTTCCTGCAGCTGGCGGTG
GGGGCGGCGCCTCGTCCCGCCCCCCTTTGGATTTGGCTGCTGTGGCGAAG
TACATCGCTGGGACGGCTGCGGAGTTCACCATCATCATGGGGTTGCTGAC
GGTGATGCAAGGGAAGTTGCTCCCGCGCCTACCCGCAAAATGGGCAAGAG
GGACCGTGTTTCTCACGTTCGGCTTCCTAGCCATGAAATCCAGAACCTTC
AGCTTGCTGAACGCGCGTCGTCCGTCCCTGGCTAAGGAGAAGGAGGAGAA
GATCGAGCGCCGCCGTCCCGACTGGATGCCACCTATCAAGGCGTTCCCCG
TCATCTGGATCACTATTGGCGTGCTGAGGGCTCTTTCCACCGCCATGGCG
AGTGTGTGGGAGGCTCTCGGAGGCAATCTTGTGGCGACTCCGATCGCGGC
CATGGTGCTTCACCTGAGCGTTGGCGACACGTGGAACCACATCAACAACG
TCGAGAAAAAGCTCGGAGTGGCTGTGTCGGGTGTCTTCCTGGTGTGGCTG
AGCGTCGCGAATGCAGTGTACCGCTACTACCAAGTGCTGCCCAAGGCTGG
CCTGGTGCTCCTGCCCAGTCTTTTGTGGATATCCGTCGCGAACCTGCTTG
TGCAGTCCATCTGGCGCCTCAACGGAAAGGAGCCCCTCTACCCACCCAAG
CAAACCTCCTGA
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