mRNA_E_fasciculatus_S2_contig7930.16093.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7930.16093.1
Unique NamemRNA_E_fasciculatus_S2_contig7930.16093.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7930.16093.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7A9_9PHAE)

HSP 1 Score: 636 bits (1640), Expect = 1.510e-218
Identity = 387/460 (84.13%), Postives = 398/460 (86.52%), Query Frame = 1
Query:    1 MRRVGMPLRRQREAKLGVGGAAXXXXA---GPPQVYPMDINTVKGILREFDRAAYGEAFRGDRLAKIAVLGKGSTSTVWKVVDIETLRVVAVKEMIVCDSKQSAILRHELGVLHPQLQPLVPPKPKRLSGRRSRASAAPV-GAGAGDTASSGTNAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXRAPRTGXXXRG----VAAA---APVVRPEPCPYMPRYYGSFVSHDDGGRPRVSIVLEYVSGVDLARWIEEVGGSS-DGEGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPIPEMWLSRVCRDMLEALRYLHERGFIHRDVKPANILLGPGGARLVDFGSTIDDGVEECGGRMHGTRRFMSPERLCARPYRPSSDLWAAGLTVASAALGENPVPHSATNFEAAEHAEAAFEMVRNHPASAGLSPSLLDFLRAVLVTDPERRPTVEQMLAHSFV 1344
            MRRV MPLRRQREAKLG GGA XXXX    GPPQVYPMD+NTVKGILREFDRAAYGEAFRGDRLAKIAVLG+GS+STVWKVVDIETLRVVAVKEMIVCDSKQ  ILRHEL VLHPQLQPLVPPKPKRLSGRRSRASAAP+ GAGAGD ASSGTN PT  XXXXXXXX                  A R+G    G    VAAA   APVVRP PCPYMPRYYGSFVSHDDGGRPRVSIV+EYVSGVDLARWIEEVGGSS DGEGR  XXXXXXXXXXXXXXXXXXXXXXXXX   RPPIPE+WLSRVCRD+LEALRYLHERGFIHRDVKPAN+LLGPGGARLVDFGSTID   +ECGGRMHGT RFMSPERLCARPY PSSDLWAAGLTVASAALGENPVPHSAT FEAA HAE AFEMVR+HPASAGLSPSLLDFLRAVLV DPERRPTVEQMLAH FV
Sbjct:    1 MRRVAMPLRRQREAKLGFGGAXXXXXXXXXGPPQVYPMDLNTVKGILREFDRAAYGEAFRGDRLAKIAVLGRGSSSTVWKVVDIETLRVVAVKEMIVCDSKQGTILRHELSVLHPQLQPLVPPKPKRLSGRRSRASAAPISGAGAGDAASSGTNTPTIAXXXXXXXXS-----------------ARRSGKKSLGGGKSVAAASTSAPVVRPGPCPYMPRYYGSFVSHDDGGRPRVSIVMEYVSGVDLARWIEEVGGSSGDGEGRREXXXXXXXXXXXXXXXXXXXXXXXXX---RPPIPELWLSRVCRDILEALRYLHERGFIHRDVKPANVLLGPGGARLVDFGSTIDGREDECGGRMHGTVRFMSPERLCARPYWPSSDLWAAGLTVASAALGENPVPHSATKFEAAGHAEVAFEMVRSHPASAGLSPSLLDFLRAVLVADPERRPTVEQMLAHPFV 440          
BLAST of mRNA_E_fasciculatus_S2_contig7930.16093.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS87_ECTSI)

HSP 1 Score: 610 bits (1573), Expect = 1.160e-215
Identity = 390/453 (86.09%), Postives = 399/453 (88.08%), Query Frame = 1
Query:    1 MRRVGMPLRRQREAKLGVGGAAXXXXA--GPPQVYPMDINTVKGILREFDRAAYGEAFRGDRLAKIAVLGKGSTSTVWKVVDIETLRVVAVKEMIVCDSKQSAILRHELGVLHPQLQPLVPPKPKRLSGRRSRASAAPVGAGAGDTASSGTNAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXRAPRTGXXXRGVAAAAPVVRPEPCPYMPRYYGSFVSHDDGGRPRVSIVLEYVSGVDLARWIEEVGGSS-DGEGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RPPIPEMWLSRVCRDMLEALRYLHERGFIHRDVKPANILLGPGGARLVDFGSTIDDGVEECGGRMHGTRRFMSPERLCARPYRPSSDLWAAGLTVASAALGENPVPHSATNFEAAEHAEAAFEMVRNHPASAGLSPSLLDFLRAVLVTDPERRPTVEQMLAHSFV 1344
            MRRV MPLRRQREAKLG     XXXX   GPPQ YPMD+NTVKGILREFDRAAYGEAFRGDRLAKIA LG+GSTSTVWKVVDIETLRVVAVKEMIVCDSKQ  ILRHEL VLHPQLQPLVPPKPKRLSGRRSRASAAPVG    D ASSGTN P XXXXXXXXXXXXXXXXXXXXXXXXXXX                PVVRP PCPYMPRYYGSFVSHDDGGRPRVSIV+EYVSGVDLARWIEEVGGSS +GEGR   XXXXXXXXXXXXXXXXXXXXXXXXXXX  RPPIPEMWL RVCRDMLEALRYLHERGFIHRDVKPAN+LLGPGGARLVDFGSTIDD  +ECGGRMHGT RFMSPERLCARPYRPSSDLWAAGLTVASAALGENPVPHSA  FEAA HAE AFEMVR+HPASAGLSPSLLDFLRAVLV DPERRPTVEQMLAH ++
Sbjct:    1 MRRVAMPLRRQREAKLGXXXXXXXXXXXXGPPQAYPMDLNTVKGILREFDRAAYGEAFRGDRLAKIAFLGRGSTSTVWKVVDIETLRVVAVKEMIVCDSKQGTILRHELSVLHPQLQPLVPPKPKRLSGRRSRASAAPVG----DAASSGTNTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------XXXXPVVRPGPCPYMPRYYGSFVSHDDGGRPRVSIVMEYVSGVDLARWIEEVGGSSGEGEGRREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPIPEMWLPRVCRDMLEALRYLHERGFIHRDVKPANVLLGPGGARLVDFGSTIDDREDECGGRMHGTVRFMSPERLCARPYRPSSDLWAAGLTVASAALGENPVPHSANKFEAAGHAEVAFEMVRSHPASAGLSPSLLDFLRAVLVADPERRPTVEQMLAHPYL 439          
BLAST of mRNA_E_fasciculatus_S2_contig7930.16093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PIH6_9CHLO)

HSP 1 Score: 118 bits (296), Expect = 4.910e-25
Identity = 73/165 (44.24%), Postives = 96/165 (58.18%), Query Frame = 1
Query:  859 IPEMWLSRVCRDMLEALRYLHERGFIHRDVKPANILLG-PGGARLVDFGST--IDDGVEECGGRMHGTRRFMSPERLCARPYRPSSDLWAAGLTVASAALGENPVPHSATNFEAAEHAEAAFEMVRNHPASAGLSPSLLDFLRAVLVTDPERRPTVEQMLAHSFV 1344
            IPE  LSR+   +L+ L +LH R  +HRD+KPANILL   G A++ DFG +  + D V  C     GT  +MSPER+  RPY   +D+W+ GL +  AA G    P+ AT      H E         PA   +S +L DF+RA L TDP+RRP+ EQ+LAH FV
Sbjct:  207 IPEGVLSRITARVLQGLAFLHRRHLVHRDIKPANILLNLQGEAKISDFGISAFVADTVANCN-TFTGTVTYMSPERIEGRPYGFPADIWSLGLVLVEAATGR--YPYDATGGPIL-HDEPPL------PAPGSVSDALRDFVRACLATDPKRRPSAEQLLAHPFV 361          
BLAST of mRNA_E_fasciculatus_S2_contig7930.16093.1 vs.
Match: Protein (kinase domain-containing protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJC2_PORUM)

HSP 1 Score: 108 bits (269), Expect = 4.290e-23
Identity = 79/246 (32.11%), Postives = 110/246 (44.72%), Query Frame = 1
Query:  613 PYMPRYYGSFVSHDDGGRPRVSIVLEYVSGVDLARWIEEVGGSSDGEGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPIPEMWLSRVCRDMLEALRYLHERGFIHRDVKPANILLGPGGA-RLVDFGSTIDDGVEECGGR-MHGTRRFMSPERLCARPYRPSSDLWAAGLTVASAALGENPVPHSATNFEAAEHAEAAFEMVRNHPASAGLSPSLLDFLRAVLVTDPERRPTVEQMLAHSFV 1344
            P + RY G F   D+ G   +S+V+EYV+G  LA  + + G                                          PE  ++ + R +++ L YLH RG IHRDVKPAN+L+   G  ++ DFG +    V    GR + GT  +++PE +  RPY  S D+W+ G TV   A G  P  H  T   A      A    R  P   GLSP+  +FL    V DP RRP+  Q+  H F+
Sbjct:   62 PNVVRYLGCFT--DEAGA--LSLVVEYVNGWSLAEHVAQYGF----------------------------------------FPEPLVAEITRQLVDGLAYLHSRGVIHRDVKPANVLVTRSGVVKICDFGVSARGSVPGISGRTVCGTPHYIAPEVIEQRPYTESVDVWSLGCTVMELATGRRPW-HELTAMSAL----VALSKSRTPPLPPGLSPACRNFLGTCWVRDPARRPSAAQLRRHPFL 258          
BLAST of mRNA_E_fasciculatus_S2_contig7930.16093.1 vs.
Match: Mitogen-activated (protein kinase kinase kinase YODA n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0B120_9ASPA)

HSP 1 Score: 104 bits (259), Expect = 8.790e-21
Identity = 75/246 (30.49%), Postives = 106/246 (43.09%), Query Frame = 1
Query:  610 CPYMPRYYGSFVSHDDGGRPRV-SIVLEYVSGVDLARWIEEVGGSSDGEGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPIPEMWLSRVCRDMLEALRYLHERGFIHRDVKPANILLGPGGARLVDFGSTIDDGVEECGGRMHGTRRFMSPERLCARPYRPSSDLWAAGLTVASAALGENPVPHSATNFEAAEHAEAAFEMVRNHPASAGLSPSLLDFLRAVLVTDPERRPTVEQMLAHSFV 1344
            CP++   +G  VS +  G PR+ ++ LEY  G D+   I   GG                                        +PE  + R  R +LE LR++H RG++H D+KP NILL  G A++ DFG +         G + GT  +M+PE L  + Y   +D+WA G T A    G  P P +           ++ EM    PA   +S    DFL    V DP  R T E +L+H FV
Sbjct:   56 CPHIIGCFGHQVSEEPSGEPRLYNLFLEYAGGGDIYGLIRSSGG----------------------------------------LPEEAVRRHVRSILEGLRHIHARGYVHCDIKPQNILLVGGEAKIADFGLS--------NGEIRGTPLYMAPEALLRKEYEAPADIWALGCTAAEMFSGRRPWPETEV-CAVIRRIGSSEEMPEIPPA---MSAEGKDFLSRCFVKDPRERWTAEMLLSHPFV 249          
BLAST of mRNA_E_fasciculatus_S2_contig7930.16093.1 vs.
Match: protein (kinase n=1 Tax=Actinoplanes sp. M2I2 TaxID=1734444 RepID=UPI00201FFCA8)

HSP 1 Score: 100 bits (248), Expect = 4.570e-19
Identity = 58/170 (34.12%), Postives = 86/170 (50.59%), Query Frame = 1
Query:  856 PIPEMWLSRVCRDMLEALRYLHERGFIHRDVKPANILLGPGGARLVDFG---STIDDGVEECGGRMHGTRRFMSPERLCARPYRPSSDLWAAGLTVASAALGENPVPHSATNFEAAEHAEAAFEMVRNH--------PASAGLSPSLLDFLRAVLVTDPERRPTVEQMLA 1332
            P+      RVC ++ EAL   H  G +HRD+KPAN++LGP GA++VDFG   +T   G  +    + GT  F++PERL      P+SD++A G+ +     G +P     T            +M+RNH        P  AG+ P + D     L+ DP RRP+  ++ A
Sbjct:  116 PLTPRLAMRVCAEVAEALAAAHAAGLVHRDIKPANVMLGPTGAKVVDFGIAAATAPSGSGDLDPDVLGTPAFLAPERLIDDAVEPASDVYALGVVLYRLLSGHSPWTTEDTT-----------QMLRNHIYVEPAPLPPVAGVPPQVADLCERCLLKDPSRRPSAREVAA 274          
BLAST of mRNA_E_fasciculatus_S2_contig7930.16093.1 vs.
Match: Non-specific (serine/threonine protein kinase n=1 Tax=Streptosporangium saharense TaxID=1706840 RepID=A0A7W7VM84_9ACTN)

HSP 1 Score: 99.0 bits (245), Expect = 1.590e-18
Identity = 59/161 (36.65%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  850 RPPIPEMWLSRVCRDMLEALRYLHERGFIHRDVKPANILLGPGGARLVDFGSTIDDGVEECGGRMHGTRRFMSPERLCARPYRPSSDLWAAGLTVASAALGENPVPHSATNFEAAEHAEAAFEMVRNHPASAGLSPSLLDFLRAVLVTDPERRPTVEQMLA 1332
            R P+    L R+      AL  +H  G +HRD KP N+LLGP G R+VDFG    DGV      + GT  +++PE+L   P  P+SD++A   T+  AA G +P       F  A  AE    +V + P  + + P L D + A L  DP  RPT  ++L+
Sbjct:  104 RGPLHGGELDRLAVGTTTALAAIHAAGVVHRDFKPNNVLLGPDGPRVVDFGIARADGVTTMTSGLIGTPAYLAPEQLGGAPASPASDVFAWASTMVFAATGVSP-------FAGAGLAEVLNRIVTHEPDLSAVPPPLRDLVAAALEKDPSHRPTAGELLS 257          
BLAST of mRNA_E_fasciculatus_S2_contig7930.16093.1 vs.
Match: putative (protein kinase n=1 Tax=Trypanosoma grayi TaxID=71804 RepID=UPI0004F4A2AC)

HSP 1 Score: 99.0 bits (245), Expect = 1.990e-18
Identity = 68/203 (33.50%), Postives = 99/203 (48.77%), Query Frame = 1
Query:  859 IPEMWLSRVCRDMLEALRYLHERGFIHRDVKPANILLGPGG-ARLVDFGSTIDDGV--------------------EEC---------GG----------RMHGTRRFMSPERLCARPYRPSSDLWAAGLTVASAALGENPVPHSAT--NFEAAEHAEAAFEMVRNHPASAGLSPSLLDFLRAVLVTDPERRPTVEQMLAHSF 1341
            +PE  ++ V   +L  +R +HERGFIHRD+KP N+L+   G  +L DFG +   G                     E+C         GG          +  GT ++MSPER   + +   SD+WA G+T+A  A+GE PV  +     FE A   EA  ++ R  P S+ LS   +DF+R  ++  PE RPT  ++L H F
Sbjct:  498 VPERLVAVVGEQLLLGVRDMHERGFIHRDIKPGNVLINEKGIVKLSDFGLSQRCGPVGERISAGNTPQQQFALTTSEDCVPPMFRLDPGGSNGTDSSTDLQCSGTNKYMSPERQRGKTHGKPSDIWAVGMTLAEFAVGEYPVDFTGCVDAFEQAYRMEAPLDLNR-FPRSSVLSEEFIDFIRISMLPVPEERPTARELLEHPF 699          
BLAST of mRNA_E_fasciculatus_S2_contig7930.16093.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHW3_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.110e-18
Identity = 59/148 (39.86%), Postives = 85/148 (57.43%), Query Frame = 1
Query:  904 ALRYLHERGFIHRDVKPANILLGPGG-ARLVDFGSTIDDGVEECGGRMHGTRRFMSPERLCARPYRPSSDLWAAGLTVASAALGENPVPHSATNFEAAEHAEAAFEMVRNHPASAGLSPSLLDFLRAVLVTDPERRPTVEQMLAHSFV 1344
            AL ++H  G +HRDVKPAN+L+   G  +L DFG+    GVE    RM GT+RFM+PERL        SDLW+ GL++A+AA G++ +   +  F      + A  + R    +  LS  L+DFL + L  DP RRP +  ++ H F+
Sbjct:    2 ALDFVHSCGRVHRDVKPANLLITRNGDLKLGDFGAA---GVENSS-RMVGTQRFMAPERLKGHRATAQSDLWSLGLSLATAAFGDDFISQGSNQFV---QLDMACRVRRRLSKTTTLSAELMDFLHSCLSRDPARRPALRDLMKHPFL 142          
BLAST of mRNA_E_fasciculatus_S2_contig7930.16093.1 vs.
Match: protein (kinase n=1 Tax=Pseudonocardia sp. TRM90224 TaxID=2812678 RepID=UPI001E50CED3)

HSP 1 Score: 97.4 bits (241), Expect = 3.300e-18
Identity = 63/164 (38.41%), Postives = 87/164 (53.05%), Query Frame = 1
Query:  856 PIPEMWLSRVCRDMLEALRYLHERGFIHRDVKPANILLGPGG-ARLVDFG--STIDDGVEECGGRMHGTRRFMSPERLCARPYRPSSDLWAAGLTVASAALGENPVPHSAT--NFEAAEHAEAAFEMVRNHPASAGLSPSLLDFLRAVLVTDPERRPTVEQMLA 1332
            P+ E   + V + +L+ALR  HE G +HRDVKP+N+++GPGG  +L DFG     DD      G M G+  +M+PERL  RP  P++DLWA G+T+  A LG +P     T     A  H E     VR  P +A +S         ++  DP+ R T  Q  A
Sbjct:  112 PLDERTAASVGKQLLDALRTAHEAGVVHRDVKPSNVMIGPGGRVKLTDFGIAQAADDPRLTTTGSMVGSPSYMAPERLDGRPASPATDLWALGVTLCFAVLGVSPFMRETTAGTIAAVLHGEVPSLPVRG-PLAAVVS--------GLMQRDPQLRLTAAQASA 266          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7930.16093.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protein1.510e-21884.13kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
Protein1.160e-21586.09kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
Uncharacterized4.910e-2544.24protein n=1 Tax=Raphidocelis subcapitata TaxID=307... [more]
Protein4.290e-2332.11kinase domain-containing protein (Fragment) n=1 Ta... [more]
Mitogen-activated8.790e-2130.49protein kinase kinase kinase YODA n=1 Tax=Apostasi... [more]
protein4.570e-1934.12kinase n=1 Tax=Actinoplanes sp. M2I2 TaxID=1734444... [more]
Non-specific1.590e-1836.65serine/threonine protein kinase n=1 Tax=Streptospo... [more]
putative1.990e-1833.50protein kinase n=1 Tax=Trypanosoma grayi TaxID=718... [more]
Uncharacterized2.110e-1839.86protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHW3... [more]
protein3.300e-1838.41kinase n=1 Tax=Pseudonocardia sp. TRM90224 TaxID=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7930contigE_fasciculatus_S2_contig7930:1317..6193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score609.8
Seed ortholog evalue1e-171
Seed eggNOG ortholog2880.D7FS87
Model size1344
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.MAP kinase kinase activity
EggNOG OGsKOG0581@1,KOG0581@2759
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-05_004950.1
Cds size1344
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842453.9231205-CDS-E_fasciculatus_S2_contig7930:1316..24521696842453.9231205-CDS-E_fasciculatus_S2_contig7930:1316..2452Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7930 1317..2452 -
1696842453.9337852-CDS-E_fasciculatus_S2_contig7930:5985..61931696842453.9337852-CDS-E_fasciculatus_S2_contig7930:5985..6193Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7930 5986..6193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7930.16093.1prot_E_fasciculatus_S2_contig7930.16093.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7930 1317..6193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7930.16093.1

>prot_E_fasciculatus_S2_contig7930.16093.1 ID=prot_E_fasciculatus_S2_contig7930.16093.1|Name=mRNA_E_fasciculatus_S2_contig7930.16093.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=448bp
MRRVGMPLRRQREAKLGVGGAAAAAAAGPPQVYPMDINTVKGILREFDRA
AYGEAFRGDRLAKIAVLGKGSTSTVWKVVDIETLRVVAVKEMIVCDSKQS
AILRHELGVLHPQLQPLVPPKPKRLSGRRSRASAAPVGAGAGDTASSGTN
APTTAAAAAAAASTSATRSGKKSLGGGFGGRAPRTGGGGRGVAAAAPVVR
PEPCPYMPRYYGSFVSHDDGGRPRVSIVLEYVSGVDLARWIEEVGGSSDG
EGRRGGGGGGAPTADPAGLQQPPEAAGKPPPPPRPPIPEMWLSRVCRDML
EALRYLHERGFIHRDVKPANILLGPGGARLVDFGSTIDDGVEECGGRMHG
TRRFMSPERLCARPYRPSSDLWAAGLTVASAALGENPVPHSATNFEAAEH
AEAAFEMVRNHPASAGLSPSLLDFLRAVLVTDPERRPTVEQMLAHSFV
back to top

mRNA from alignment at E_fasciculatus_S2_contig7930:1317..6193-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7930.16093.1 ID=mRNA_E_fasciculatus_S2_contig7930.16093.1|Name=mRNA_E_fasciculatus_S2_contig7930.16093.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4877bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7930:1317..6193- (Ectocarpus fasciculatus EfasUO2)
ATGCGGAGAGTGGGCATGCCCCTTCGGCGCCAGCGGGAGGCCAAGCTGGG GGTCGGGGGGGCGGCGGCGGCGGCGGCGGCGGGTCCACCTCAAGTCTACC CCATGGACATCAACACCGTCAAGGGGATCCTGAGAGAGTTCGACCGAGCG GCGTACGGCGAGGCGTTCCGCGGGGACCGGCTTGCCAAGATTGCTGTGCT TGGGAAAGGTGAGCAGCCGCAGCTGAGGACCAAAAAAGTAGAAGTGGGCG CCTGTTTGAAGGCGGGGTAAAATGCGAGAACAAAGAGGACACCGACACAG GGCAAGAAAGACAACCCGAACTACTACTGCTGTAGCTAAAGCCGGTGTAG GTTGTGTGTCACCTGTAGCTATGTACCTTGCTGCTCGCGTCGGCTATAGC TGTATTATACTTTTGAGGCGGAAACGATGTCGGGGCTCCAAGAGTCCAGG CGGAGAGCTGGCTGGACGCCGGGGGAGGGGAGAGGATGGACGCAATAATA ATTTTCGAGAAATCACGAAATAACGGCGGTATACATGGAAAAAGAGACCG TGTTTTTTCAGGGGGAGAACGAAACGTAGTAATAGTAGCAGTAGCAGCAG CAGCAGACACGCGGGGTGCACGATCGCTGCTACGGCAGCAGCAAGAGGGG TGCTGTCGAGGGCATCTTCCCGATGCGAAGATCAACCCACTGGTGCCTAA CTGCCCGACCGAGTGTTGGCTGTATCGTACGTTGTGTGGTGGTATGCGTG AGTATGCGATGCCACACCGACGACACACAACACACGAAAACTCAAAAAAA AAAAAATGTCGTCAACCACACACACACCGTACCCCACTCCAACACCCACC CCCCTTCCCTTTTTTGTCTCTCGGCTGTTTTGTCTTCCCTNNNNNNNNNN AAAACTCAAAAAAAAAAAAATGTCGTCAACCACACACACACCGTACCCCA GTGCAAGAAGCAGCAAAGTTGAGTTGTTGGGACAGCGAGAGAGAGATACT CCGAGTTTTCCGCCGCTGCCGATGCTGCTGTTGCGACCTTTCTTCCTCTC TCCCTTGTCCTACAGCAGTACAGCAGTAGCAGCACACACCGCCGCCATAT CGAGCAGCAGCAGCACACCCACCCCTACACCCTCAGCAGATCAGGCTGCC TCGCTTTTTTTTTTCAGCAGCGTTTCTTGCTGGAGGTGCTTCCCCTTCAA GATATCGGTTGTTTGCTGATTTTTCTCCGCTCTCTCTCTCTCGTCAGTGA AAACGAAGAGTCACTCTCGTGCGCACCAACAGACCAGCAGGTGCCACTAC AATACTGCAATCAGTAATCAGTGCATGCTCTGCTCGCCTCCGAAGCTCAG CCGGTACACACTACACCGCTGTGTCGTTATTGTTGTCTGGGCATAGGCCA GCAGCACAACAAGCAAAGTAATGATAATAGCCTGCTCTGCCTATGAGTAA GTACAATGATGAGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGTCAGC AGCAGCAGGGTCCACGCGGAGGCGGGCGGCATGATTATTTTCCGCTCAAA GAGAGATAGGCTCGGTCGGAGACTAGTCGGAGAGAGCGAACGGAGCACCA CCAGTCAGTGTTGCCTCGCTCTTGCATCGTGCGGATGTATGGCTGCTACA GCAGAGACGTCATTGAGTCTATAATAAGGTGCATCAATTAGTAATTGAAG AGACGGGTTTAGCTGCTGGAAAGCTGCCGGAGCGGGCGGTGAATGTGTCT GTTGTAAAATTGTGAGCTGATTTTTTTTTTGCTGGTGTGTCGGCCTCTTG GTTGCCAACTGCTCGCTCCTTGGTTGCCACTCACATCTTCGAAATATCCT ATGCGTACAGCAGTATTGCATATGAATGGGTTGCTGTTGGCGCAGCAAGA ATAACGTTGTTGTTGCATTCATCCGAGAGACATTTTACTGTGTAGTTGCC CGGAGTGCCTGGCTGCCCCGCCGGCCAAATTCAGGTGCCATGCCCGAAAA GGTCATTCGGCTTGTGCTACAAAAATGCAAACGTTTATGGTGCTGTTCGC CTGTACGCATACGTTTCGGTCCCCAAAGTTGACTGCTGGTTGCAAGATAC ATACCACGGTCTCTTTTACTATAGTTGAAGGGTTTTCTATGCGTAGTCGA CGCTGCTGCTGCTGCTGCTGCTGCTGTGAAGGCAATATTACGAAACATCG TGTTCTTAATAGCACGCGCTGTTGTCTGTATCCTTGGGCAACACACACGT ACGTGTATGGAGCCCTTCAGCCTTCAGCCCCCCTTCGTGGATGACTTCCT GTAGAGCAGCCAGTCGTCATGTGCGTTAGATACAACCCATTGAGGGATAC AGGGATACACACCTGCCCGTTAATCCATCAACAACGTAAGCAGTAGATAT CTACGAGTACGACAGCAGGGGGCACACACACAAAAACACTAGTCTGTTCC AATGTTGATGTTTCCCACCCTTCCCAAGCTGCATGCACCAACCACCAGGC AGGGACACCTATATCATACGTACATACGATGAAAGGGGTGCGTTGCCGCC GCCCCCAGCAAAGTACCCGTTCGACTGGTCACTCGCAGCGGCAGGAGGGA TATACTGTACGCATGTTTTTTTTTCTTTTTTCTGGTGTTTGGCCACTGAA TCACTCGTATCTTTTGTAGACACAAAGTTGAAATGAGCAAACGAACACGT ACTTTTCACGTTCGGATGAAGGTGGGGCACAAACGCACACGCGCGCACAC ACACCCTCTGTTTACCGGGGATGTGTCGACAGTTGGATCTCCTCACACAC AGCAGCATGGGCAGGTAGGTTTTGGAGATCTGGAGCAGATTTTTCCCTCA CGCGGTGTTTTGTCTGCGACCGATACAGCCGATATTTTGCCGCCGGGTGT TTTTTTTTTCCCCGAAAAATCCGTCCCTTCTTTTTTGCCGCTGGTATGCA TAGGATTGATTTTCAACGATGTTTGGCTTTCCTTACTACGAAGTACTTGT GCACCCGGGCAGATTTTGAAAATGCTGAGCGTAGATAACCTATCCAATGC GACCGAATGAACGTGCACCTGCCCGCGGGTACAATGCTAATGCTACACTG CTATGAAAATTCCCTAAACTCTTCGCACTCCCGGGAGGTCGAGAAATCTA CCGGATTCTTTTTCCAAAGATATTCGTCTTCACCCGTGAGATGATTTCGA TAATCCAAAGCGGAAGCTTCCGAGCATGAATACCTTGTGAGACGTGGGAG GATTAAGGCTTGACGAAGCATTTCCCCCGAATTACCTGTACCTTTCCGAC CAGCCTCGACGCCTGGTGCATAGTAACTTCAACTTTTACAACCCCAGCTG ATGGCCCCTGAAACAAGAAAATGATGCTGAGAAGGGCCCTTCAAAGTTGG ACGAAAAGTCACTTACGTATCCCACTACTTGCATCCATAGATGCATACGA CGAACACATTTTTCCTTGGCAGCCGGTCGTCGCGGTCAGCGCTATTAGCT GAAGATACACAGCCGTGAGCCTGCACTGGTTTTGTGTGTGGAGAATCAAA GTACAATACGCATTCGTATTTTGGCACAAGTACCCGGATGGTGCTTTGGG TGCGCCCCACCGTTCGCCGGAAGCAGCAGTTTTTGCTTGCTGGGCCTCCG AGCGCGAGGTAGAGGTGCCTACAAGCCCTTCTTGATGACCTCACCGCCAC CTCCCCCTCCCCCCCCCCTCTGCAAACTTTTCACGCGGCAGGCTCGACCA GCACAGTCTGGAAGGTGGTGGACATCGAGACCCTCAGAGTGGTGGCCGTC AAGGAGATGATCGTGTGCGACTCGAAGCAGAGCGCCATCCTGCGCCACGA GCTCGGCGTGCTCCACCCGCAGCTGCAGCCCCTGGTCCCGCCCAAGCCGA AACGCCTGTCGGGGCGAAGGAGCAGGGCCTCTGCGGCGCCCGTCGGCGCC GGCGCCGGCGACACCGCCTCCTCCGGCACAAACGCCCCGACCACCGCCGC CGCCGCCGCCGCTGCCGCCTCTACCTCGGCAACAAGAAGCGGGAAAAAGT CTTTGGGTGGCGGCTTCGGTGGCAGAGCTCCCCGTACCGGCGGCGGCGGC AGGGGCGTAGCCGCCGCCGCGCCGGTCGTCCGACCGGAGCCGTGCCCGTA CATGCCGCGCTACTATGGGTCCTTCGTCTCGCACGACGACGGGGGGCGGC CGCGCGTGAGCATCGTGCTTGAGTACGTGTCAGGGGTGGACCTAGCGCGA TGGATAGAGGAGGTGGGCGGTAGCAGCGATGGCGAGGGGCGAAGAGGAGG AGGAGGAGGAGGAGCCCCGACAGCAGACCCCGCCGGACTGCAGCAGCCTC CAGAGGCGGCGGGGAAGCCGCCGCCGCCGCCGCGGCCGCCGATCCCAGAG ATGTGGCTGTCTCGAGTCTGCCGCGACATGCTCGAGGCCCTTCGATACCT GCACGAGCGGGGCTTCATCCACAGGGACGTGAAGCCCGCGAATATTCTGC TGGGGCCGGGGGGCGCGCGCCTGGTGGACTTCGGGAGCACCATCGATGAC GGCGTGGAGGAGTGCGGGGGGCGGATGCACGGGACGAGGCGCTTCATGAG CCCCGAGCGGCTGTGCGCGCGGCCGTACAGGCCGAGCTCGGACCTCTGGG CAGCCGGGCTGACGGTGGCCTCGGCGGCGCTGGGGGAGAACCCGGTGCCG CACAGCGCGACCAACTTCGAGGCCGCGGAGCACGCGGAGGCAGCGTTCGA GATGGTCCGGAACCATCCCGCGTCGGCCGGGCTCTCCCCGAGCCTGCTGG ACTTCTTGAGGGCGGTGCTGGTGACGGATCCCGAGAGAAGACCGACGGTG GAGCAGATGCTCGCGCACTCGTTCGTT
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7930:1317..6193-

>mRNA_E_fasciculatus_S2_contig7930.16093.1 ID=mRNA_E_fasciculatus_S2_contig7930.16093.1|Name=mRNA_E_fasciculatus_S2_contig7930.16093.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1344bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7930:1317..6193- (Ectocarpus fasciculatus EfasUO2)
ATGCGGAGAGTGGGCATGCCCCTTCGGCGCCAGCGGGAGGCCAAGCTGGG
GGTCGGGGGGGCGGCGGCGGCGGCGGCGGCGGGTCCACCTCAAGTCTACC
CCATGGACATCAACACCGTCAAGGGGATCCTGAGAGAGTTCGACCGAGCG
GCGTACGGCGAGGCGTTCCGCGGGGACCGGCTTGCCAAGATTGCTGTGCT
TGGGAAAGGCTCGACCAGCACAGTCTGGAAGGTGGTGGACATCGAGACCC
TCAGAGTGGTGGCCGTCAAGGAGATGATCGTGTGCGACTCGAAGCAGAGC
GCCATCCTGCGCCACGAGCTCGGCGTGCTCCACCCGCAGCTGCAGCCCCT
GGTCCCGCCCAAGCCGAAACGCCTGTCGGGGCGAAGGAGCAGGGCCTCTG
CGGCGCCCGTCGGCGCCGGCGCCGGCGACACCGCCTCCTCCGGCACAAAC
GCCCCGACCACCGCCGCCGCCGCCGCCGCTGCCGCCTCTACCTCGGCAAC
AAGAAGCGGGAAAAAGTCTTTGGGTGGCGGCTTCGGTGGCAGAGCTCCCC
GTACCGGCGGCGGCGGCAGGGGCGTAGCCGCCGCCGCGCCGGTCGTCCGA
CCGGAGCCGTGCCCGTACATGCCGCGCTACTATGGGTCCTTCGTCTCGCA
CGACGACGGGGGGCGGCCGCGCGTGAGCATCGTGCTTGAGTACGTGTCAG
GGGTGGACCTAGCGCGATGGATAGAGGAGGTGGGCGGTAGCAGCGATGGC
GAGGGGCGAAGAGGAGGAGGAGGAGGAGGAGCCCCGACAGCAGACCCCGC
CGGACTGCAGCAGCCTCCAGAGGCGGCGGGGAAGCCGCCGCCGCCGCCGC
GGCCGCCGATCCCAGAGATGTGGCTGTCTCGAGTCTGCCGCGACATGCTC
GAGGCCCTTCGATACCTGCACGAGCGGGGCTTCATCCACAGGGACGTGAA
GCCCGCGAATATTCTGCTGGGGCCGGGGGGCGCGCGCCTGGTGGACTTCG
GGAGCACCATCGATGACGGCGTGGAGGAGTGCGGGGGGCGGATGCACGGG
ACGAGGCGCTTCATGAGCCCCGAGCGGCTGTGCGCGCGGCCGTACAGGCC
GAGCTCGGACCTCTGGGCAGCCGGGCTGACGGTGGCCTCGGCGGCGCTGG
GGGAGAACCCGGTGCCGCACAGCGCGACCAACTTCGAGGCCGCGGAGCAC
GCGGAGGCAGCGTTCGAGATGGTCCGGAACCATCCCGCGTCGGCCGGGCT
CTCCCCGAGCCTGCTGGACTTCTTGAGGGCGGTGCTGGTGACGGATCCCG
AGAGAAGACCGACGGTGGAGCAGATGCTCGCGCACTCGTTCGTT
back to top