mRNA_E_fasciculatus_S2_contig7894.16054.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7894.16054.1
Unique NamemRNA_E_fasciculatus_S2_contig7894.16054.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7894.16054.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 1.600e-56
Identity = 106/151 (70.20%), Postives = 119/151 (78.81%), Query Frame = 1
Query:    4 QTRCLDAFVVALSQACEGGEKRWYSSTLELQLTSWGMCRACRSISILDVRVTNQTPSSLWCRRATQTGPNTPTSKLGVSSRVPVVRALRLTWALSTETLLRRAAIELWTWSECLWLQGSLCATSLGSADWWPRGLTQLVLEARLNISIENV 456
            +TRCLDAFV+ALSQACEGGEKRWY+STLELQLTS  +CRACR+ SIL V V +QTP SLW  R  QT PNT +  L +SSRVPVVRALRLTWALS E LLR+AAIELWTWSE L L GS C +SLGS   WPRGLTQLVL    +I++  V
Sbjct:    8 RTRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSSCVSSLGSEVVWPRGLTQLVLYTDSDIAMGTV 158          
BLAST of mRNA_E_fasciculatus_S2_contig7894.16054.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 7.340e-52
Identity = 97/150 (64.67%), Postives = 110/150 (73.33%), Query Frame = 1
Query:    1 GQTRCLDAFVVALSQACEGGEKRWYSSTLELQLTSWGMCRACRSISILDVRVTNQTPSSLWCRRATQTGPNTPTSKLGVSSRVPVVRALRLTWALSTETLLRRAAIELWTWSECLWLQGSLCATSLGSADWWPRGLTQLVLEARLNISIE 450
            G TR  DAF +ALSQACEGGEKRWY+ST ELQL S  +CRACRS   L VRVT  TP+SLW     Q  PNT +SK+ V SRVPVVRALRLTWA S ETL++RAAIELW+ SE L + G LCA SLGS   WP GLTQLVL+   +I +E
Sbjct:    5 GYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAASLGSVV-WPLGLTQLVLDTDFHIPME 153          
BLAST of mRNA_E_fasciculatus_S2_contig7894.16054.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.480e-31
Identity = 78/146 (53.42%), Postives = 95/146 (65.07%), Query Frame = 1
Query:    4 QTRCLDAFVVALSQACEGGEKRWYSSTLELQLTSWGMCRACRSISILDVRVTNQTPSSLWCRRATQTGPNTPTSKLGVSSRVPVVRALRLTWALSTETLLRRAAIELWTWSECLWLQGSLCATSLGSADWWPRGLTQLVLEARLNI 441
            Q RCLDAFVVALSQ  EGGEKRWY+STL+LQL S   C ACRS  +L V V  +TP +LW       G   PT+  G S+RVP V+A+ LTWA  TE+ L  A+ ELWT  E L LQ SLC  +L S   WP+GL +LV++  + I
Sbjct:    6 QRRCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLW-----SLGQANPTA--GTSTRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDSVV-WPQGLQRLVMDCTVFI 143          
BLAST of mRNA_E_fasciculatus_S2_contig7894.16054.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.620e-29
Identity = 73/148 (49.32%), Postives = 94/148 (63.51%), Query Frame = 1
Query:    1 GQTRCLDAFVVALSQACEGGEKRWYSSTLELQLTSWGMCRACRSISILDVRVTNQTPSSLWCRRATQTGPNTPTSKLGVSSRVPVVRALRLTWALSTETLLRRAAIELWTWSECLWLQGSLCATSLGSADWWPRGLTQLVLEARLNIS 444
            G ++CLDAFVVAL+QAC+G EKRWY STLELQL S  +C ACR +  L VRV  QTP SLW      T  N  + K+ +SSRVPVV+A  LTWAL    L +R+A E+ + S C        A SL SA  WP+ L ++V E+ + ++
Sbjct:    5 GNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAV-WPQRLKRMVFESDMTVN 151          
BLAST of mRNA_E_fasciculatus_S2_contig7894.16054.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.430e-26
Identity = 67/148 (45.27%), Postives = 89/148 (60.14%), Query Frame = 1
Query:    1 GQTRCLDAFVVALSQACEGGEKRWYSSTLELQLTSWGMCRACRSISILDVRVTNQTPSSLWCRRATQTGPNTPTSKLGVSSRVPVVRALRLTWALSTETLLRRAAIELWTWSECLWLQGSLCATSLGSADWWPRGLTQLVLEARLNIS 444
            G++ CL AF+VAL+Q C G EKRWY+STLELQL S   C ACR +  L VRV  QTP SLW    +       + +  VS+RVP V+A  LTWAL  E LL+ +A+EL + S+   + G+    SLGS  W    L +LV ++ +  S
Sbjct:   13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFWLQMMLKRLVFDSDMPAS 160          
BLAST of mRNA_E_fasciculatus_S2_contig7894.16054.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.840e-26
Identity = 70/117 (59.83%), Postives = 75/117 (64.10%), Query Frame = 1
Query:  109 GMCRACRSISILDVRVTNQTPSSLWCRRATQTGPNTPTSKLGVSSRVPVVRALRLTWALSTETLLRRAAIELWTWSECLWLQGSLCATSLGSADWWPRGLTQLVLEARLNISIENVS 459
            G  RACRS SIL  R                  PNT  S + VS R P V AL LTWAL  E+LLR AAIELWTWSECL LQGSLCA SL SA+WWPR LTQLVL+A L+I  ENVS
Sbjct: 1083 GGARACRSTSILHTR------------------PNTSKSAVPVSGRAPAVWALHLTWALPMESLLRTAAIELWTWSECLELQGSLCAASLRSANWWPRRLTQLVLKADLDILTENVS 1181          
BLAST of mRNA_E_fasciculatus_S2_contig7894.16054.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.070e-24
Identity = 64/140 (45.71%), Postives = 84/140 (60.00%), Query Frame = 1
Query:   16 LDAFVVALSQACEGGEKRWYSSTLELQLTSWGMCRACRSISILDVRVTNQTPSSLWCRRATQTGPNTPTSKLGVSSRVPVVRALRLTWALSTETLLRRAAIELWTWSECLWLQGSLCATSLGSADWWPRGLTQLVLEARL 435
            LD  +VAL+QAC+G EKRWY STLELQL S  +C ACRS  +L V V   TP +LW  R ++T P+  + ++  S+RVP V+AL  TWAL  + L +RAA E    +E     G   A S+ S   WP  L +LV   R+
Sbjct:   90 LDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESVV-WPESLKRLVFSRRM 228          
BLAST of mRNA_E_fasciculatus_S2_contig7894.16054.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM8_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.630e-21
Identity = 53/86 (61.63%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 GQTRCLDAFVVALSQACEGGEKRWYSSTLELQLTSWGMCRACRSISILDVRVTNQTPSSLWCRRATQTGPNTPTSKLGVSSRVPVV 258
            G T+C DAFVVALSQACEGG KR Y+STLEL L S  +CRA RS S L VRV  QTP S W     Q  P+  +SK+ +SSRVPVV
Sbjct:   18 GPTQCFDAFVVALSQACEGGNKRSYTSTLELPLASLDICRAGRSTSTLHVRVQYQTPRSFWSPPKVQLRPDEGSSKIRLSSRVPVV 103          
BLAST of mRNA_E_fasciculatus_S2_contig7894.16054.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.490e-21
Identity = 65/148 (43.92%), Postives = 85/148 (57.43%), Query Frame = 1
Query:    1 GQTRCLDAFVVALSQACEGGEKRWYSSTLELQLTSWGMCRACRSISILDVRVTNQTPSSLWCRRATQTGPNTPTSKLGVSSRVPVVRALRLTWALSTETLLRRAAIELWTWSECLWLQGSLCATSLGSADWWPRGLTQLVLEARLNIS 444
            G++ CLDAF+VAL QA +G  KRWY STLELQL S   C ACRS    DV++  QTP SLW  R +       + +  + SRVP V+A    WAL  E LL R+A EL   SE     G   ATS G   W+ + LT+L+  +  +++
Sbjct:   25 GRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPGRMGWFQK-LTRLMFYSERSVN 171          
BLAST of mRNA_E_fasciculatus_S2_contig7894.16054.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 5.840e-17
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    4 QTRCLDAFVVALSQACEGGEKRWYSSTLELQLTSWGMCRACRSISILDVRVTNQTPSSLWCRRAT 198
            +++CLDAFVVAL+Q C+G EKRWY+STLELQL S   C ACR +  L VRV  +TP SLW  R T
Sbjct:   38 RSKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWSPRTT 102          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7894.16054.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
Uncharacterized1.600e-5670.20protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.340e-5264.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.480e-3153.42protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.620e-2949.32protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.430e-2645.27protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.840e-2659.83protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.070e-2445.71protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.630e-2161.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.490e-2143.92protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.840e-1761.54protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7894contigE_fasciculatus_S2_contig7894:2050..3153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1104
Hectar predicted targeting categoryother localisation
Exons1
Cds size1104
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842449.852134-CDS-E_fasciculatus_S2_contig7894:2049..31531696842449.852134-CDS-E_fasciculatus_S2_contig7894:2049..3153Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7894 2050..3153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7894.16054.1prot_E_fasciculatus_S2_contig7894.16054.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7894 2050..3153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7894.16054.1

>prot_E_fasciculatus_S2_contig7894.16054.1 ID=prot_E_fasciculatus_S2_contig7894.16054.1|Name=mRNA_E_fasciculatus_S2_contig7894.16054.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=368bp
GQTRCLDAFVVALSQACEGGEKRWYSSTLELQLTSWGMCRACRSISILDV
RVTNQTPSSLWCRRATQTGPNTPTSKLGVSSRVPVVRALRLTWALSTETL
LRRAAIELWTWSECLWLQGSLCATSLGSADWWPRGLTQLVLEARLNISIE
NVSWPERLQCLALGSYFNQSIAGVVWPASLRQLSFGDEFNQPIAEVMWPA
FLRKVSFGMRFNQPIAGVMWPASLQQVSFGARFNQSIAGVVWPASLQQVS
FSAAFNQPIAEVVWPASLRKLSFGYMFNQPIAQVVWPVSLQQVSFGKRFN
HPIAGAVWPASLRKLSFGDLFNRPIAEVMWPESLQQVSFGATFNQPIAGV
VWPRSLRRVTCCGKHIL*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7894:2050..3153-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7894.16054.1 ID=mRNA_E_fasciculatus_S2_contig7894.16054.1|Name=mRNA_E_fasciculatus_S2_contig7894.16054.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1104bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7894:2050..3153- (Ectocarpus fasciculatus EfasUO2)
GGGCAAACCCGGTGCCTTGACGCCTTCGTCGTCGCCTTGAGCCAAGCATG CGAGGGAGGGGAGAAGCGCTGGTATTCGTCGACGCTGGAGCTGCAGCTAA CCTCATGGGGTATGTGCAGGGCGTGCCGAAGCATCTCGATCTTGGACGTG CGTGTAACTAATCAGACTCCTAGCAGCCTATGGTGTCGTCGCGCAACACA GACCGGGCCGAACACACCCACTTCGAAGCTTGGTGTCTCGAGCCGTGTGC CGGTCGTGCGGGCTCTTCGTTTGACGTGGGCACTTTCCACGGAAACTTTG CTGCGGAGAGCCGCCATCGAGCTGTGGACGTGGTCAGAATGCCTGTGGCT GCAGGGATCACTGTGTGCAACTAGCTTGGGATCAGCGGATTGGTGGCCCC GAGGACTGACACAGCTAGTGCTGGAGGCACGTTTGAATATTTCTATAGAG AATGTATCGTGGCCCGAACGCTTGCAGTGTCTGGCACTTGGGAGTTATTT CAATCAGTCTATCGCCGGAGTCGTGTGGCCGGCGTCCCTGCGACAGCTAT CGTTCGGGGACGAATTCAATCAACCTATTGCGGAAGTCATGTGGCCGGCG TTCCTACGGAAAGTGTCGTTCGGGATGCGATTCAATCAGCCTATTGCCGG AGTCATGTGGCCGGCGTCCCTGCAGCAAGTGTCGTTCGGGGCAAGATTCA ATCAGTCTATCGCCGGAGTCGTGTGGCCGGCGTCCCTGCAGCAAGTGTCG TTCTCGGCAGCATTCAACCAACCTATTGCGGAAGTCGTGTGGCCGGCATC CCTGCGAAAGCTATCGTTCGGGTACATGTTCAATCAGCCTATCGCCCAAG TCGTATGGCCGGTTTCCCTGCAGCAAGTCTCGTTCGGGAAGCGATTCAAT CATCCCATTGCTGGAGCCGTGTGGCCGGCGTCCCTGCGAAAGCTGTCGTT CGGGGACTTATTCAATCGACCTATTGCGGAAGTCATGTGGCCGGAATCCC TGCAGCAAGTATCGTTCGGGGCAACCTTCAATCAACCTATTGCCGGGGTC GTGTGGCCAAGGTCGCTGCGACGTGTGACATGTTGTGGCAAACATATACT CTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7894:2050..3153-

>mRNA_E_fasciculatus_S2_contig7894.16054.1 ID=mRNA_E_fasciculatus_S2_contig7894.16054.1|Name=mRNA_E_fasciculatus_S2_contig7894.16054.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1104bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7894:2050..3153- (Ectocarpus fasciculatus EfasUO2)
GGGCAAACCCGGTGCCTTGACGCCTTCGTCGTCGCCTTGAGCCAAGCATG
CGAGGGAGGGGAGAAGCGCTGGTATTCGTCGACGCTGGAGCTGCAGCTAA
CCTCATGGGGTATGTGCAGGGCGTGCCGAAGCATCTCGATCTTGGACGTG
CGTGTAACTAATCAGACTCCTAGCAGCCTATGGTGTCGTCGCGCAACACA
GACCGGGCCGAACACACCCACTTCGAAGCTTGGTGTCTCGAGCCGTGTGC
CGGTCGTGCGGGCTCTTCGTTTGACGTGGGCACTTTCCACGGAAACTTTG
CTGCGGAGAGCCGCCATCGAGCTGTGGACGTGGTCAGAATGCCTGTGGCT
GCAGGGATCACTGTGTGCAACTAGCTTGGGATCAGCGGATTGGTGGCCCC
GAGGACTGACACAGCTAGTGCTGGAGGCACGTTTGAATATTTCTATAGAG
AATGTATCGTGGCCCGAACGCTTGCAGTGTCTGGCACTTGGGAGTTATTT
CAATCAGTCTATCGCCGGAGTCGTGTGGCCGGCGTCCCTGCGACAGCTAT
CGTTCGGGGACGAATTCAATCAACCTATTGCGGAAGTCATGTGGCCGGCG
TTCCTACGGAAAGTGTCGTTCGGGATGCGATTCAATCAGCCTATTGCCGG
AGTCATGTGGCCGGCGTCCCTGCAGCAAGTGTCGTTCGGGGCAAGATTCA
ATCAGTCTATCGCCGGAGTCGTGTGGCCGGCGTCCCTGCAGCAAGTGTCG
TTCTCGGCAGCATTCAACCAACCTATTGCGGAAGTCGTGTGGCCGGCATC
CCTGCGAAAGCTATCGTTCGGGTACATGTTCAATCAGCCTATCGCCCAAG
TCGTATGGCCGGTTTCCCTGCAGCAAGTCTCGTTCGGGAAGCGATTCAAT
CATCCCATTGCTGGAGCCGTGTGGCCGGCGTCCCTGCGAAAGCTGTCGTT
CGGGGACTTATTCAATCGACCTATTGCGGAAGTCATGTGGCCGGAATCCC
TGCAGCAAGTATCGTTCGGGGCAACCTTCAATCAACCTATTGCCGGGGTC
GTGTGGCCAAGGTCGCTGCGACGTGTGACATGTTGTGGCAAACATATACT
CTGA
back to top