mRNA_E_fasciculatus_S2_contig7883.16044.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7883.16044.1
Unique NamemRNA_E_fasciculatus_S2_contig7883.16044.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7883.16044.1 vs.
Match: 2-isopropylmalate (synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF6_9PHAE)

HSP 1 Score: 452 bits (1162), Expect = 3.610e-154
Identity = 229/233 (98.28%), Postives = 231/233 (99.14%), Query Frame = 1 
Query:    1 ETGRDPTRVKVFDTTLRDGEQSPGCTMTREEKLMVAKQLSKLGVDIIEAGFPIASQGDFEAVQEIATVVGQGGNPPIICGLARALTKDIDVCANAVAPARFPRIHTFIATSDIHMKHKLKKTREQVLEITREMVTHARSHVDDVEFSAEDALRSDYDFLSEVYSVAIEAGATTINVPDTVGYTTPKEFMGLMHHLRGTVRGIDKVTISVHGHDDLGMAVANFMSAIEGGARQV 699
            ETGRDPTRVKVFDTTLRDGEQSPGCTMTREEKLMVAKQLSKLGVDIIEAGFPIASQGDFEAVQEIATVVGQG NPPIICGLARAL KDIDVCANAVAPARFPRIHTFIATSDIHMKHKLKK+REQVLEITREMVTHARSHVDDVEFSAEDALRSDYDFLSEVYSVAIEAGATTINVPDTVGYTTPKEFMGLMHHLRGTVRG+DKVTISVHGHDDLGMAVANFMSAIEGGARQV
Sbjct:  119 ETGRDPTRVKVFDTTLRDGEQSPGCTMTREEKLMVAKQLSKLGVDIIEAGFPIASQGDFEAVQEIATVVGQGDNPPIICGLARALRKDIDVCANAVAPARFPRIHTFIATSDIHMKHKLKKSREQVLEITREMVTHARSHVDDVEFSAEDALRSDYDFLSEVYSVAIEAGATTINVPDTVGYTTPKEFMGLMHHLRGTVRGVDKVTISVHGHDDLGMAVANFMSAIEGGARQV 351
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7883.16044.1 vs.
Match: 2-isopropylmalate (synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU2_ECTSI)

HSP 1 Score: 398 bits (1022), Expect = 6.280e-135
Identity = 203/207 (98.07%), Postives = 205/207 (99.03%), Query Frame = 1 
Query:   79 MTREEKLMVAKQLSKLGVDIIEAGFPIASQGDFEAVQEIATVVGQGGNPPIICGLARALTKDIDVCANAVAPARFPRIHTFIATSDIHMKHKLKKTREQVLEITREMVTHARSHVDDVEFSAEDALRSDYDFLSEVYSVAIEAGATTINVPDTVGYTTPKEFMGLMHHLRGTVRGIDKVTISVHGHDDLGMAVANFMSAIEGGARQV 699
            MTREEKLMVAKQL KLGVDIIEAGFPIASQGDFEAVQEIATVVGQGGNPPIICGLARAL KDIDVCANAVAPARFPRIHTFIATSDIHMKHKLKK+REQVLEITREMVTHARSHVDDVEFSAEDALRSDYDFLS+VYSVAIEAGATTINVPDTVGYTTPKEFMGLMHHLRGTVRGIDKVTISVHGHDDLGMAVANFMSAIEGGARQV
Sbjct:    1 MTREEKLMVAKQLGKLGVDIIEAGFPIASQGDFEAVQEIATVVGQGGNPPIICGLARALKKDIDVCANAVAPARFPRIHTFIATSDIHMKHKLKKSREQVLEITREMVTHARSHVDDVEFSAEDALRSDYDFLSKVYSVAIEAGATTINVPDTVGYTTPKEFMGLMHHLRGTVRGIDKVTISVHGHDDLGMAVANFMSAIEGGARQV 207
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7883.16044.1 vs.
Match: 2-isopropylmalate (synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKD7_9STRA)

HSP 1 Score: 381 bits (979), Expect = 1.470e-127
Identity = 193/233 (82.83%), Postives = 212/233 (90.99%), Query Frame = 1 
Query:    1 ETGRDPTRVKVFDTTLRDGEQSPGCTMTREEKLMVAKQLSKLGVDIIEAGFPIASQGDFEAVQEIATVVGQGGNPPIICGLARALTKDIDVCANAVAPARFPRIHTFIATSDIHMKHKLKKTREQVLEITREMVTHARSHVDDVEFSAEDALRSDYDFLSEVYSVAIEAGATTINVPDTVGYTTPKEFMGLMHHLRGTVRGIDKVTISVHGHDDLGMAVANFMSAIEGGARQV 699
            ETGRDPTRVK+FDTTLRDGEQSPGCTMTREEKL+VA+QLSKLGVD+IEAGFPIAS GDFEAV+EIA  VG   NPPIICGLARAL KDIDVCA AV PARFPRIHTFIATSDIHM+HKLKKTREQVL IT EMV+HA+S +DDVEFSAEDALRSD +FL++V+SVAI AGA+TINVPDTVGYTTP EF  L+H+LR  V GID VTISVHGH+DLGMAVANF++AIEGGARQV
Sbjct:   32 ETGRDPTRVKIFDTTLRDGEQSPGCTMTREEKLVVARQLSKLGVDVIEAGFPIASPGDFEAVKEIAETVGTANNPPIICGLARALKKDIDVCAEAVRPARFPRIHTFIATSDIHMEHKLKKTREQVLAITHEMVSHAKSLIDDVEFSAEDALRSDPEFLAKVFSVAIAAGASTINVPDTVGYTTPGEFKSLIHYLREHVAGIDGVTISVHGHNDLGMAVANFLAAIEGGARQV 264
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7883.16044.1 vs.
Match: 2-isopropylmalate (synthase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVN2_9STRA)

HSP 1 Score: 365 bits (938), Expect = 7.090e-122
Identity = 186/232 (80.17%), Postives = 206/232 (88.79%), Query Frame = 1 
Query:    4 TGRDPTRVKVFDTTLRDGEQSPGCTMTREEKLMVAKQLSKLGVDIIEAGFPIASQGDFEAVQEIATVVGQGGNPPIICGLARALTKDIDVCANAVAPARFPRIHTFIATSDIHMKHKLKKTREQVLEITREMVTHARSHVDDVEFSAEDALRSDYDFLSEVYSVAIEAGATTINVPDTVGYTTPKEFMGLMHHLRGTVRGIDKVTISVHGHDDLGMAVANFMSAIEGGARQV 699
            TGRDPTRV+VFDTTLRDGEQSPGCTMT EEK+ VAKQL +LGVD+IEAGFP AS GDF+AVQ+IA  VG   +PPIICGLARAL KDI+ CA AV PARFPRIHTFIATSDIHM+HKLKKTREQVLEITREMV+ A S VDDVEFSAEDALRSD DFL +VYSVA+EAGATT+NVPDTVGYTTP+EF  L+  LR  V+GI+ VTISVHGH+DLGMAVANF++AIEGGARQV
Sbjct:  107 TGRDPTRVRVFDTTLRDGEQSPGCTMTEEEKMSVAKQLHRLGVDVIEAGFPFASPGDFKAVQKIAQEVGNREDPPIICGLARALPKDIEACAEAVKPARFPRIHTFIATSDIHMEHKLKKTREQVLEITREMVSLAHSLVDDVEFSAEDALRSDPDFLCQVYSVAVEAGATTLNVPDTVGYTTPQEFFQLIQKLRRGVKGIENVTISVHGHNDLGMAVANFLAAIEGGARQV 338
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7883.16044.1 vs.
Match: 2-isopropylmalate (synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NWK8_HETAK)

HSP 1 Score: 368 bits (944), Expect = 7.280e-122
Identity = 190/232 (81.90%), Postives = 205/232 (88.36%), Query Frame = 1 
Query:    4 TGRDPTRVKVFDTTLRDGEQSPGCTMTREEKLMVAKQLSKLGVDIIEAGFPIASQGDFEAVQEIATVVGQGGNPPIICGLARALTKDIDVCANAVAPARFPRIHTFIATSDIHMKHKLKKTREQVLEITREMVTHARSHVDDVEFSAEDALRSDYDFLSEVYSVAIEAGATTINVPDTVGYTTPKEFMGLMHHLRGTVRGIDKVTISVHGHDDLGMAVANFMSAIEGGARQV 699
            TGRDPTRVKVFDTTLRDGEQSPGCTMT EEK+ VAKQL++LGVD+IEAGFP AS GDF+AV+ IA  VG+  NPPIICGLARAL  DI+ CA AV PA+FPRIHTFIATSDIHM+ KLKKTREQV+ ITREMV  ARS V+DVEFSAEDALRSD DFL EVYSVAIEAGATTINVPDTVGYTTP EF  LMH LR  VRGID+VTISVHGHDDLGMAVANF++AIEGGARQV
Sbjct:   72 TGRDPTRVKVFDTTLRDGEQSPGCTMTEEEKIAVAKQLARLGVDVIEAGFPFASPGDFKAVKRIAESVGRLENPPIICGLARALKADIEACAEAVKPAKFPRIHTFIATSDIHMEAKLKKTREQVVAITREMVGLARSLVEDVEFSAEDALRSDPDFLCEVYSVAIEAGATTINVPDTVGYTTPDEFYALMHKLRAGVRGIDQVTISVHGHDDLGMAVANFLAAIEGGARQV 303
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7883.16044.1 vs.
Match: 2-isopropylmalate (synthase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6G1_9STRA)

HSP 1 Score: 357 bits (917), Expect = 2.620e-118
Identity = 184/233 (78.97%), Postives = 202/233 (86.70%), Query Frame = 1 
Query:    1 ETGRDPTRVKVFDTTLRDGEQSPGCTMTREEKLMVAKQLSKLGVDIIEAGFPIASQGDFEAVQEIATVVGQGGNPPIICGLARALTKDIDVCANAVAPARFPRIHTFIATSDIHMKHKLKKTREQVLEITREMVTHARSHVDDVEFSAEDALRSDYDFLSEVYSVAIEAGATTINVPDTVGYTTPKEFMGLMHHLRGTVRGIDKVTISVHGHDDLGMAVANFMSAIEGGARQV 699
            ETGRDP RVK+FDTTLRDGEQSPGCTMT EEKL VAKQL+KLGVD+IEAGFPIAS GDF+AV+ IA  VG   NPPIICGLARAL KDI+ C NAV  A FPRIHTFIATSDIHM HKLKK+RE+VL ITREMVT+ARS  +DVEFSAEDALRSD  FL +VYSVA+EAGATT+NVPDTVGYTTP EF  L+  LR  V+G++ VTISVHGHDDLGMAVANFM+AIEGGARQV
Sbjct:   32 ETGRDPMRVKIFDTTLRDGEQSPGCTMTAEEKLQVAKQLAKLGVDVIEAGFPIASTGDFDAVRRIAESVGNMENPPIICGLARALRKDIETCWNAVKYAAFPRIHTFIATSDIHMLHKLKKSREEVLGITREMVTYARSLCEDVEFSAEDALRSDPAFLYQVYSVAVEAGATTLNVPDTVGYTTPSEFKALIRGLRAHVKGVEGVTISVHGHDDLGMAVANFMAAIEGGARQV 264
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7883.16044.1 vs.
Match: 2-isopropylmalate (synthase n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0VM37_9CRYP)

HSP 1 Score: 357 bits (915), Expect = 4.340e-117
Identity = 179/232 (77.16%), Postives = 203/232 (87.50%), Query Frame = 1 
Query:    4 TGRDPTRVKVFDTTLRDGEQSPGCTMTREEKLMVAKQLSKLGVDIIEAGFPIASQGDFEAVQEIATVVGQGGNPPIICGLARALTKDIDVCANAVAPARFPRIHTFIATSDIHMKHKLKKTREQVLEITREMVTHARSHVDDVEFSAEDALRSDYDFLSEVYSVAIEAGATTINVPDTVGYTTPKEFMGLMHHLRGTVRGIDKVTISVHGHDDLGMAVANFMSAIEGGARQV 699
            TGRDP R+KVFDTTLRDGEQSPGC+MT EEK+ VAKQL+KLGVD+IEAGFPIAS  DF AV  IATVVG   NPPIICGLARA   DI+ CA A++PA FPRIHTFIATSDIHM+HKLKKTRE+VL IT EMV++A+S VDDVEFSAEDALRSD+ FL+EVYSVA++AGATT+NVPDTVGYTTP EF  L+ +LR  V GI+ VTISVHGH+DLGMAV+NF+SAIEGGARQV
Sbjct:   95 TGRDPARIKVFDTTLRDGEQSPGCSMTSEEKMQVAKQLAKLGVDVIEAGFPIASNDDFAAVNAIATVVGNQENPPIICGLARATKGDIEACAKAISPAAFPRIHTFIATSDIHMEHKLKKTREEVLAITAEMVSYAKSFVDDVEFSAEDALRSDWAFLAEVYSVAVKAGATTLNVPDTVGYTTPAEFKALVEYLREHVEGIEGVTISVHGHNDLGMAVSNFLSAIEGGARQV 326
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7883.16044.1 vs.
Match: 2-isopropylmalate (synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKU9_9STRA)

HSP 1 Score: 352 bits (904), Expect = 9.540e-116
Identity = 178/233 (76.39%), Postives = 203/233 (87.12%), Query Frame = 1 
Query:    1 ETGRDPTRVKVFDTTLRDGEQSPGCTMTREEKLMVAKQLSKLGVDIIEAGFPIASQGDFEAVQEIATVVGQGGNPPIICGLARALTKDIDVCANAVAPARFPRIHTFIATSDIHMKHKLKKTREQVLEITREMVTHARSHVDDVEFSAEDALRSDYDFLSEVYSVAIEAGATTINVPDTVGYTTPKEFMGLMHHLRGTVRGIDKVTISVHGHDDLGMAVANFMSAIEGGARQV 699
            ETGRDP RVK+FDTTLRDGEQSPGCTMT EEK+ VA+QL++LGVDIIEAGFP AS GDF+AV  IA  VG   +PPIICGLARA+ KDI+ CA A+  A+FPRIHTFIATSDIHM+HKLKK+R++VL+IT EMV++ARS  +DVEFSAEDALRSD +FL EVYS AIEAGATT+NVPDTVGYTTP+EF  L+  +R  VRGI+ VTISVHGHDDLGMAVANFMSAIEGGARQV
Sbjct:   80 ETGRDPERVKIFDTTLRDGEQSPGCTMTAEEKIQVARQLARLGVDIIEAGFPFASAGDFDAVSRIAKEVGNLEDPPIICGLARAMKKDIETCARAIEHAKFPRIHTFIATSDIHMEHKLKKSRDEVLDITTEMVSYARSFCEDVEFSAEDALRSDPEFLYEVYSRAIEAGATTLNVPDTVGYTTPREFQTLIEGMRTHVRGIESVTISVHGHDDLGMAVANFMSAIEGGARQV 312
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7883.16044.1 vs.
Match: 2-isopropylmalate (synthase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCD2_CHOCR)

HSP 1 Score: 346 bits (887), Expect = 7.100e-114
Identity = 174/232 (75.00%), Postives = 200/232 (86.21%), Query Frame = 1 
Query:    4 TGRDPTRVKVFDTTLRDGEQSPGCTMTREEKLMVAKQLSKLGVDIIEAGFPIASQGDFEAVQEIATVVGQGGNPPIICGLARALTKDIDVCANAVAPARFPRIHTFIATSDIHMKHKLKKTREQVLEITREMVTHARSHVDDVEFSAEDALRSDYDFLSEVYSVAIEAGATTINVPDTVGYTTPKEFMGLMHHLRGTVRGIDKVTISVHGHDDLGMAVANFMSAIEGGARQV 699
            TGRDP RVK+FDTTLRDGEQSPG ++T +EK+++A+QL+KLGVD+IEAGFPIAS+GDF AV+EIA  VG   NPPIICGLARAL KDI  C  AV  A FPRIHTFIATSD+HM +KLKKTRE+V+EIT+E VT+ARS  +DVEFSAEDA+RSD DFL EV+S AIEAGATTINVPDTVGYTTP EF  L+ +LR  VRGID VTISVHGHDDLGMAVANF+SA+E GARQ+
Sbjct:   25 TGRDPDRVKIFDTTLRDGEQSPGASLTADEKMVIARQLAKLGVDVIEAGFPIASEGDFTAVREIAKSVGNRDNPPIICGLARALEKDISRCYEAVKHAAFPRIHTFIATSDLHMAYKLKKTREEVVEITKETVTYARSLCEDVEFSAEDAIRSDPDFLCEVFSAAIEAGATTINVPDTVGYTTPSEFASLIRYLRRNVRGIDDVTISVHGHDDLGMAVANFLSAVENGARQM 256
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7883.16044.1 vs.
Match: 2-isopropylmalate (synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP25_9STRA)

HSP 1 Score: 356 bits (914), Expect = 7.650e-111
Identity = 183/233 (78.54%), Postives = 201/233 (86.27%), Query Frame = 1 
Query:    1 ETGRDPTRVKVFDTTLRDGEQSPGCTMTREEKLMVAKQLSKLGVDIIEAGFPIASQGDFEAVQEIATVVGQGGNPPIICGLARALTKDIDVCANAVAPARFPRIHTFIATSDIHMKHKLKKTREQVLEITREMVTHARSHVDDVEFSAEDALRSDYDFLSEVYSVAIEAGATTINVPDTVGYTTPKEFMGLMHHLRGTVRGIDKVTISVHGHDDLGMAVANFMSAIEGGARQV 699
            ETGRDP RVK+FDTTLRDGEQSPGCTMT EEKL VAKQL+KLGVD+IEAGFPIAS GDF+AV+ IA  VG   NPPIICGLARAL KDI+ C NAV  A FPRIHTFIATSDIHM HKLKK+RE+VL ITREMVT+ARS  +DVEFSAEDALRSD  FL +VYSVA+EAGATT+NVPDTVGYTTP EF  L+  LR  V+G++ VTISVHGHDDLGMAVANFM+AI GGARQV
Sbjct:  180 ETGRDPMRVKIFDTTLRDGEQSPGCTMTAEEKLQVAKQLAKLGVDVIEAGFPIASTGDFDAVRRIAESVGNMENPPIICGLARALKKDIETCWNAVKYAAFPRIHTFIATSDIHMLHKLKKSREEVLGITREMVTYARSLCEDVEFSAEDALRSDPAFLYQVYSVAVEAGATTLNVPDTVGYTTPSEFKALIRGLRANVKGVEGVTISVHGHDDLGMAVANFMAAIRGGARQV 412
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7883.16044.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
2-isopropylmalate3.610e-15498.28synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID... [more]
2-isopropylmalate6.280e-13598.07synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
2-isopropylmalate1.470e-12782.83synthase n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
2-isopropylmalate7.090e-12280.17synthase (Fragment) n=1 Tax=Fibrocapsa japonica Ta... [more]
2-isopropylmalate7.280e-12281.90synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 R... [more]
2-isopropylmalate2.620e-11878.97synthase n=1 Tax=Nannochloropsis salina CCMP1776 T... [more]
2-isopropylmalate4.340e-11777.16synthase n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7... [more]
2-isopropylmalate9.540e-11676.39synthase n=1 Tax=Rhizochromulina marina TaxID=1034... [more]
2-isopropylmalate7.100e-11475.00synthase n=1 Tax=Chondrus crispus TaxID=2769 RepID... [more]
2-isopropylmalate7.650e-11178.54synthase n=1 Tax=Nannochloropsis gaditana TaxID=72... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7883contigE_fasciculatus_S2_contig7883:2297..6648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score402.1
Seed ortholog evalue1.7e-109
Seed eggNOG ortholog2880.D8LHU2
Model size699
KEGG rclassRC00004,RC00470,RC02754
KEGG koko:K01649
KEGG ReactionR01213
KEGG Pathwayko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230
KEGG ModuleM00432
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.Belongs to the alpha-IPM synthase homocitrate synthase family
EggNOG OGsCOG0119@1,KOG2367@2759
Ec32 ortholog description2-Isopropylmalate synthase
Ec32 orthologEc-18_000460.1
EC2.3.3.13
Cds size699
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7883.16044.1prot_E_fasciculatus_S2_contig7883.16044.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7883 2297..6648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842448.8564234-CDS-E_fasciculatus_S2_contig7883:2296..23981696842448.8564234-CDS-E_fasciculatus_S2_contig7883:2296..2398Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7883 2297..2398 +
1696842448.8675292-CDS-E_fasciculatus_S2_contig7883:2660..27381696842448.8675292-CDS-E_fasciculatus_S2_contig7883:2660..2738Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7883 2661..2738 +
1696842448.8766696-CDS-E_fasciculatus_S2_contig7883:3372..34621696842448.8766696-CDS-E_fasciculatus_S2_contig7883:3372..3462Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7883 3373..3462 +
1696842448.8886602-CDS-E_fasciculatus_S2_contig7883:4245..43501696842448.8886602-CDS-E_fasciculatus_S2_contig7883:4245..4350Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7883 4246..4350 +
1696842448.8978546-CDS-E_fasciculatus_S2_contig7883:5272..53801696842448.8978546-CDS-E_fasciculatus_S2_contig7883:5272..5380Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7883 5273..5380 +
1696842448.9087734-CDS-E_fasciculatus_S2_contig7883:6015..61311696842448.9087734-CDS-E_fasciculatus_S2_contig7883:6015..6131Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7883 6016..6131 +
1696842448.92584-CDS-E_fasciculatus_S2_contig7883:6548..66481696842448.92584-CDS-E_fasciculatus_S2_contig7883:6548..6648Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7883 6549..6648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7883.16044.1

>prot_E_fasciculatus_S2_contig7883.16044.1 ID=prot_E_fasciculatus_S2_contig7883.16044.1|Name=mRNA_E_fasciculatus_S2_contig7883.16044.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=233bp
ETGRDPTRVKVFDTTLRDGEQSPGCTMTREEKLMVAKQLSKLGVDIIEAG
FPIASQGDFEAVQEIATVVGQGGNPPIICGLARALTKDIDVCANAVAPAR
FPRIHTFIATSDIHMKHKLKKTREQVLEITREMVTHARSHVDDVEFSAED
ALRSDYDFLSEVYSVAIEAGATTINVPDTVGYTTPKEFMGLMHHLRGTVR
GIDKVTISVHGHDDLGMAVANFMSAIEGGARQV
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mRNA from alignment at E_fasciculatus_S2_contig7883:2297..6648+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7883.16044.1 ID=mRNA_E_fasciculatus_S2_contig7883.16044.1|Name=mRNA_E_fasciculatus_S2_contig7883.16044.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4352bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7883:2297..6648+ (Ectocarpus fasciculatus EfasUO2)
GAAACTGGGCGCGATCCCACCCGAGTGAAAGTCTTCGACACCACCCTGAG
GGACGGGGAGCAGAGTCCAGGCTGCACCATGACTAGGGAAGAGAAGCTCA
TGGTGAGAAAAAGTCACGAAACAGAGGGCGGCATCAGGGGAAGAACCCAT
CTATAGGAGGCAGGCGGGGGAGATTTGAACGATAGCAGTATACCACTGCG
TGCATCGGGGGCTATGCCGTGCGTGCGCTTGAGATTTTTATCACGGCAAC
CTCAGTAGTGCACTAGGCCACGGTCCGTTTCGTTGAGAGGAGAGGAGGGC
GTGGCGTTCGTGCGTCTGTAAATGCCCGTTCTATGTTGCTTGGTTTTGTG
TGTAACACGCGCAGGTGGCAAAGCAGCTGAGCAAGCTTGGAGTGGATATC
ATCGAGGCAGGGTTTCCTATCGCATCGCAAGGCGACTTTGAGGTGCGAAA
ATAGTGCACGGTGTGAGACGGAACTTTCGATCCACGGCGCCGCAGCGGGT
CTACGGCGCTCGCTCCACATGTTCCAAGGAGTCAAGGATGGCGCTCGGTG
TGGTATTTGTTTGAGGTGTCCAGGGTGTCCTTGGCCTCGCCATGATCCGA
TATGAACCGGCACGTGTATCAAATCGAGGAGCCGCCCCCCGCACCGCTAT
TGCATGTTCCGATAGGTTAGCTTTCGGTTTTTGTCCGACCCACACACATG
ATGGTTCTAGCATTTGTTTGACGACGGACCGAGTCTTAACTAGATTTTGG
GATTAGCAACTGACACGAGTTGAATGTGAAGACAACGACATCAAAACACA
CGCAAGCCTGGCACAATGGCAGGGCAATCAGCGTTCCAGCGTCCACGTAT
AAATTTGTTTTGTGCAGCATACGCCCTAAATTATTTGTTTTTGGTGTTGG
GGAGGGGTAGTATTGTTTTTTTTGTTTTGGGGAGGTAATATAGACCACCT
TGTGAGAGTTTTAACCAACTCCCGCCGCTCACCCGTGCTGCCGCTTACCG
ACCCCACCGCTTGTGAACGCCGCCGCGCAATCGTGGAAACCCGCAAACAT
TAACGTTTGTCTTCTCGTCGAGGCAGGCGGTGCAGGAGATCGCTACAGTG
GTCGGCCAGGGCGGCAACCCTCCAATTATTTGCGGCCTGGCGAGGGCCCT
AACGAAAGACATCGACGTGAGTGCTTATTATGGCTGGTTCGAGACGAAGC
AGTTTATGCAAAGCCGCCGGTGTTTAGCTGCCCTCGTGTAGTGCGCTACA
TCGTTGGTTGCGCATGTTGGCTTTTGAGCTTGGCTCTCCCCGTGAGGTTG
TCGTTTTCCGTTGAAGAGCCGGGAGAACCCGCAGGCTTGTGAGATCGATC
GGTTCTCAGAGATGGACTGCTCCACGATCAAGAGGGTGGGGGTTGGTGCC
AAACTCGACCGACGAGTGCAAGGAAAGGTAGCGAACCCTCTCGACGAGAG
CTTTAAAATGCCACAGTTTTCGGCATTGGGGGTCTCTTAGTTGTGGAGCT
GTCGAGCTTTACAAACATAAATCGACTGCATTATTGCGGTGGTGTCGCGA
GACTCATCTTTCCGCAGCTGTCATATACTGCTGTACTGGTACCTCCTTGT
TGTGTGTCTATTGCTGTTGATTTGCTCGTCATCTTAGTGCGCACTTTTGT
ACGGACTTGGCGATTGCTTGCAGCAAGTAGTTGGATGCCGGATGTCGAAA
GGCGTTGGGGGAGGTCGTTCTTTTTGTTGCCTTCTCTTTTTTTCGGAAAT
GCGGATCTTTTGTCTCGTGAAAGCTCCTTCAAGGACGTCTGACTCTTTCT
GTGACGTGTCCCGGTGGATACCATTTGGACTGGCCGAGCCTGTCTGGCTT
GTTCTCCACAGACACCACGATCAGTCCTCTTGAGGAGGTGTTGATGGGCA
CCTATTTATAACATGTATTTTTTTGCCGCCTTTCTGCTTTGGGCACCAGG
TGTGCGCGAACGCGGTGGCGCCAGCACGGTTTCCCCGCATCCACACGTTC
ATCGCTACCTCGGACATCCACATGAAGCACAAGCTGAAGAAGACCAGGGA
GCAGGTAAAAGAGACAATGACTCCATACGAGGAATCCCTCTGGAGTGAGC
TGGCTGATGAAGGCACAGCTGAAGTGTCATCAAAGGCAAAGGGGGTGACG
CAAGATGAAAATTGAGTCAGGCAGGCACGACCAACCCATAGCTGTGTAAC
TGCCAGCTGCGGTGTGACGTTTTCCCAAGCTCAACAGCTCGCACGGCTGA
CATGTTCTCGGCTCGAACAGCCCAGCGATTCTCATCGAACCCAAAAGAAG
AAAGTTCACTGTGCAGTCAGTGTTAGTGAGGAACCCTTGTGCGTGACCAC
GGGTTCGGGTAAACGGCACAAGGGCAGTGAGCGCTGATTTGAAGTGAAAA
CAACAACAAGTATCGTTCAGTCTTGTGCTATGAATGGTAGTCCAGGTTGG
TCAGAGCCGGGGATTGGGTGTACTGTACCTGTGTGGTTGTTGGGGGGGTA
AGGTGTCTGTTGCGTTGTACCCACGGCGGGTATCGTTACGGCGCTGGTAG
AGAAGCACTGTCGACATACCCTTCCCTTCCCTTCCCTTGTCTGCTCATCC
TTATCCTTGCTTGATACGCTGACGGAGAGACATTCAGAGAGGCGTTGTCG
ACATTTCCCTTCTCGTTCCCTCCTGATACTTGCTTGATATGTCGGCTCAC
CCAGTACCTGGGTTCGACTCAGCCCCAGTGCAGAATATACACCAAAAGCG
TTGCTTCCTATAACGTTTTACCGCCTAGGCACATGTTCGTATATTCCCTT
TCTTTGATACAATTTACCATCGGGTGGAAAGGGGGTGCTCTCCACTCTGT
CATGCGGGTTGTTGCGAGACACCCTCAACCTCAGCTGCAAAACGATTGAT
TGCCGCGTGGACGGAGGTATGCAAAGCGCCCCTGCTGCTGAAACGAATAT
TTCTGCTGTTCGCTTTATCACGGCAGGTCCTGGAGATCACGCGGGAGATG
GTGACGCACGCCCGCTCTCACGTGGATGACGTCGAGTTCAGCGCCGAGGA
CGCGCTTCGCTCCGACTACGACTTCCTATCGGAGGTGCGGCTTTTCCTTT
GGCCTTTGGCTGTTCGTTTTTGCACGTGCTCGGTCACTTGCATTAATCTG
ATACAGAGTTTTTGGGTTGCTTGGATACTTTGGGCTCATCTGGTACAGAG
GTTTAGAGTTGCTTGGACACTTTGATCATCTTCTACGTTGCTCGAAGACT
TTCTCATCTGATGCAGATGTTTGGGGTTGCTTGAACACTTATCTCATCTG
GTCAGAGTTTTGGGGTTTGGTTTCCATATGTGCATATTGCGTGCGGTCTC
GACCGACGCTCAGAAATTCGACAACAAGACGAGAAATTGTTCGGCGGGAT
CACCAGTCACCCGCAGCAGGTTTCATTGAATTGTTCGTGCTGAGAACGAG
AATGCGGCAGCTGTTCTTACCAGCGATTATGGTTGTGGCTGTCTCTAGGC
ATGCGCCTGTGCTGCATGCGGGCGTTGGCGAACGGCTGGGGCCATGTACG
AACGAACTGCTGTCGCCGGCCTTTTCATCTCGATGAGGTAGTTTGTCTCT
TTTTGTATGTTGTGCCCAAAATCAAGATCTGATATATGGTCGTGCAAACC
AACAACTAAAAGGAAGTCGTATTAATTTAGTTGATCGCCCCTTTTTTGTT
TGTTTGTTTTTTGTTGAAGGTGTACTCTGTCGCGATTGAGGCCGGAGCGA
CAACCATCAACGTCCCCGACACGGTCGGATACACCACCCCCAAGGAGTTC
ATGGGGCTCATGCACCACCTACGCGGGACTGTGAGGTAGGCAGGTTGGTT
TGGCGGCGAAAACGTTCGATGTGAAAGAACTGGCTCATGCTTGGCTATAT
CCCATACAAGTATGGCCTGTAAACCGATGGGACGAGTACACGCACACATA
TGGCACTTGTACAATCAGCGTTTGGCTTCTAAGGGCTGCACGGTATGACC
GTGGCCAAGGTTGCCAGTGATTTGTTGTCAGAGGTCGAAGTCCCATTAAT
CCTTGCAAGGCCATCTTGTATGTGAGAAGTCTCGAATATTTTCGGCTCTC
TGTTCGTGGCGGGAGCCGATGTTTTGCCGTTTGCCTGACGAGTGTCTGTG
AGGTGCTTGTATTTTAGGAGTATTAGTAATCCAGTCTACAATTGCCGTGC
TCGCTCGTTACACCCGTCGGCCGATTCGGCTTTCTCTGCTTTCTTTTCCC
AGGGGCATCGACAAGGTGACCATCTCCGTTCACGGGCATGACGACCTTGG
CATGGCCGTCGCCAACTTCATGTCCGCCATCGAAGGAGGAGCCCGCCAGG
TA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7883:2297..6648+

>mRNA_E_fasciculatus_S2_contig7883.16044.1 ID=mRNA_E_fasciculatus_S2_contig7883.16044.1|Name=mRNA_E_fasciculatus_S2_contig7883.16044.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=699bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7883:2297..6648+ (Ectocarpus fasciculatus EfasUO2)
GAAACTGGGCGCGATCCCACCCGAGTGAAAGTCTTCGACACCACCCTGAG
GGACGGGGAGCAGAGTCCAGGCTGCACCATGACTAGGGAAGAGAAGCTCA
TGGTGGCAAAGCAGCTGAGCAAGCTTGGAGTGGATATCATCGAGGCAGGG
TTTCCTATCGCATCGCAAGGCGACTTTGAGGCGGTGCAGGAGATCGCTAC
AGTGGTCGGCCAGGGCGGCAACCCTCCAATTATTTGCGGCCTGGCGAGGG
CCCTAACGAAAGACATCGACGTGTGCGCGAACGCGGTGGCGCCAGCACGG
TTTCCCCGCATCCACACGTTCATCGCTACCTCGGACATCCACATGAAGCA
CAAGCTGAAGAAGACCAGGGAGCAGGTCCTGGAGATCACGCGGGAGATGG
TGACGCACGCCCGCTCTCACGTGGATGACGTCGAGTTCAGCGCCGAGGAC
GCGCTTCGCTCCGACTACGACTTCCTATCGGAGGTGTACTCTGTCGCGAT
TGAGGCCGGAGCGACAACCATCAACGTCCCCGACACGGTCGGATACACCA
CCCCCAAGGAGTTCATGGGGCTCATGCACCACCTACGCGGGACTGTGAGG
GGCATCGACAAGGTGACCATCTCCGTTCACGGGCATGACGACCTTGGCAT
GGCCGTCGCCAACTTCATGTCCGCCATCGAAGGAGGAGCCCGCCAGGTA
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