prot_E_fasciculatus_S2_contig7872.16035.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig7872.16035.1
Unique Nameprot_E_fasciculatus_S2_contig7872.16035.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length305
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7872.16035.1 vs. uniprot
Match: A0A6H5J8H1_9PHAE (Structure-specific endonuclease subunit SLX4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H1_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 1.750e-70
Identity = 202/315 (64.13%), Postives = 211/315 (66.98%), Query Frame = 0 
Query:    1 MPSFGQMTLQELAGMMAVYGLKKKSKREMTERLEHIWKTLHPASAAAEGGMPAAGDGTXXXXXXXXXXXXXXX--DAPTRDSDSGGDPSSCLPASSQGRRRGRAAIEARPTFSPAATAAATSSASIPRRPPLSRPPRGGNGSRGTGFSQEEAVPPLPSTSRXXXXXXXXX---------GFLADNSSGGKGGDADLEERIRGVIMGYAPLHEDILLLKTVDLSAIHTLIKNAGGVKCTKKDLASYLDARGITFVDRGGVKRRARGXXXXXXXXXEXXXXXXXXXXXXXXXPGATGAVAAGQRSGLYITRGGAICR 304
            MPSFGQMTLQELAGMMAVYGLKKKSKREMTERLEHIWKTLHPA  AAE GM AAGDG  XXXXXXXXXXXXXX  DAP+RDS  GGDPS+ L ASSQG RR R A EARPT S                                                XXXXXXXXX         GFLA+NSSG  G DADL ERIR VIMGYAPLHEDILLLKTVDLSAIHTLIKNAG VKCTKKDLASYLD+RGITF+DRGGVKRRARG        X XXXXXXXXX      PGATG  AAG+   + + R G +CR
Sbjct: 1359 MPSFGQMTLQELAGMMAVYGLKKKSKREMTERLEHIWKTLHPA--AAEEGMSAAGDGNAXXXXXXXXXXXXXXXRDAPSRDS--GGDPSAYLSASSQGHRRSRGAAEARPTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFLAENSSGRNGVDADLGERIRSVIMGYAPLHEDILLLKTVDLSAIHTLIKNAG-VKCTKKDLASYLDSRGITFIDRGGVKRRARGGERETEGEXXXXXXXXXXXR-----PGATGT-AAGRNGAVCVARDGTLCR 1662
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7872.16035.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J8H1_9PHAE1.750e-7064.13Structure-specific endonuclease subunit SLX4 n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018574Structure-specific endonuclease subunit Slx4PFAMPF09494Slx4coord: 187..242
e-value: 1.1E-5
score: 25.2
NoneNo IPR availablePANTHERPTHR21541BTB POZ DOMAIN CONTAINING 12coord: 1..277

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7872contigE_fasciculatus_S2_contig7872:1857..4354 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7872.16035.1mRNA_E_fasciculatus_S2_contig7872.16035.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig7872 1678..4939 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig7872.16035.1 ID=prot_E_fasciculatus_S2_contig7872.16035.1|Name=mRNA_E_fasciculatus_S2_contig7872.16035.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=305bp
MPSFGQMTLQELAGMMAVYGLKKKSKREMTERLEHIWKTLHPASAAAEGG
MPAAGDGTATSSSSSSSGRSRKRDAPTRDSDSGGDPSSCLPASSQGRRRG
RAAIEARPTFSPAATAAATSSASIPRRPPLSRPPRGGNGSRGTGFSQEEA
VPPLPSTSRSQQQQQQQQGFLADNSSGGKGGDADLEERIRGVIMGYAPLH
EDILLLKTVDLSAIHTLIKNAGGVKCTKKDLASYLDARGITFVDRGGVKR
RARGGGEREVEGGEEEQQSQQRKRKKKRRPGATGAVAAGQRSGLYITRGG
AICR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018574Structure-sp_endonuc_su_Slx4