mRNA_E_fasciculatus_S2_contig787.16032.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig787.16032.1
Unique NamemRNA_E_fasciculatus_S2_contig787.16032.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig787.16032.1 vs.
Match: TLC (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT8_ECTSI)

HSP 1 Score: 619 bits (1597), Expect = 1.980e-216
Identity = 321/346 (92.77%), Postives = 326/346 (94.22%), Query Frame = 1 
Query:    1 SQPQPREFLLLAAPKQRLPVGVRGNRGCLPE------RPAAMSNNDVLSWKRGWIPSAIAASLLFLPLESVGLEVFEPGWARGIAAFVALEVVRVGAVGLLPYWWRDIARRTGPLTDRSREQFGGQLTSLLLSSYLTWSIIRWDWQLTNKLPFIQTVGEDHTGVVFNLMAIMLSYIVHDTWHLVRSWRVNRNRVMLIHHFVFAVISIMGMRFRQLPIHMRIHFIMFSAEMSTPLLNGRWLMRHIGLVHKSHVIMIATSFSFLVLFLVTRIMLYLFMILDIIQLYAELIMPMPLRSVFLGAVVVSYVVNLYWAWLIVGALFFGNEGKRRGGPTLTVNHPDTQK-SKD 1017
            SQPQ RE LLL + KQRLPVGVRGNR  L E        AAMSNNDVLSWKRGWIPSAIA SLLFLPLESVGLE FEPGW RGIAAFVALEVVRVGAVGLLPYWWR+IARRTGPLTDRSREQFGGQLTSLL+SSYLTWSIIRWDWQLTNKLPFIQTVGEDHTGVVF+LMAIMLSYIVHDTWHLVRSWRVNRNRVMLIHHFVFAVISIMGMRFRQLPIHMRIHFIMFSAEMSTPLLNGRWLMRHIGLVHKSHVIMIATSFSFLVLFLVTRIMLYLFMILDIIQLYAELIMPMPLRSVFLGAVVVSYVVNLYWAWLI+GALF GNEGKRRGGPTLTVNHPDTQK SKD
Sbjct:   86 SQPQQRELLLLVSLKQRLPVGVRGNRRGLAELGVAAAETAAMSNNDVLSWKRGWIPSAIAVSLLFLPLESVGLEAFEPGWERGIAAFVALEVVRVGAVGLLPYWWREIARRTGPLTDRSREQFGGQLTSLLVSSYLTWSIIRWDWQLTNKLPFIQTVGEDHTGVVFSLMAIMLSYIVHDTWHLVRSWRVNRNRVMLIHHFVFAVISIMGMRFRQLPIHMRIHFIMFSAEMSTPLLNGRWLMRHIGLVHKSHVIMIATSFSFLVLFLVTRIMLYLFMILDIIQLYAELIMPMPLRSVFLGAVVVSYVVNLYWAWLIIGALF-GNEGKRRGGPTLTVNHPDTQKKSKD 430
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BLAST of mRNA_E_fasciculatus_S2_contig787.16032.1 vs.
Match: TLC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K373_9PHAE)

HSP 1 Score: 613 bits (1580), Expect = 1.550e-213
Identity = 317/347 (91.35%), Postives = 323/347 (93.08%), Query Frame = 1 
Query:    1 SQPQPREFLLLAAPKQRLPVGVRGNRGCLPE------RPAAMSNNDVLSWKRGWIPSAIAASLLFLPLESVGLEVFEPGWARGIAAFVALEVVRVGAVGLLPYWWRDIARRTGPLTDRSREQFGGQLTSLLLSSYLTWSIIRWDWQLTNKLPFIQTVGEDHTGVVFNLMAIMLSYIVHDTWHLVRSWRVNRNRVMLIHHFVFAVISIMGMRFRQLPIHMRIHFIMFSAEMSTPLLNGRWLMRHIGLVHKSHVIMIATSFSFLVLFLVTRIMLYLFMILDIIQLYAELIMPMPLRSVFLGAVVVSYVVNLYWAWLIVGALFFGNEGKRRGGPTLTVNHPDTQK-SKDT 1020
            SQPQ RE LL    KQRLPVG RGNR  L E        AAMSNNDVLSWKRGWIPSAIA SLLFLPLESVGLEVFEPGW RGIAAFVALEVVRVGAV LLPYWWRD+ARRTGPLTDRSREQFGGQLTSLL+SSYLTWSIIRWDWQLTNKLPFIQTVGEDHTGVVF+LMAIMLSYIVHDTWHLVRSWRVNRNRVMLIHHFVFAVISIMGMRFRQLPIHMRIHFIMFSAEMSTPLLNGRWLMRHIGLVHKSHVIMIATSFSFL LFLVTRI++YLFMILDIIQLYAELIMPMPLRSVFLGAVVVSYVVNLYWAWLI+GALF GNEGKRRGGPTLTVNHPDTQK SKDT
Sbjct:  106 SQPQLRELLLPVTLKQRLPVGARGNREGLAELVVAAAETAAMSNNDVLSWKRGWIPSAIAVSLLFLPLESVGLEVFEPGWERGIAAFVALEVVRVGAVALLPYWWRDVARRTGPLTDRSREQFGGQLTSLLVSSYLTWSIIRWDWQLTNKLPFIQTVGEDHTGVVFSLMAIMLSYIVHDTWHLVRSWRVNRNRVMLIHHFVFAVISIMGMRFRQLPIHMRIHFIMFSAEMSTPLLNGRWLMRHIGLVHKSHVIMIATSFSFLALFLVTRILMYLFMILDIIQLYAELIMPMPLRSVFLGAVVVSYVVNLYWAWLIIGALF-GNEGKRRGGPTLTVNHPDTQKKSKDT 451
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BLAST of mRNA_E_fasciculatus_S2_contig787.16032.1 vs.
Match: TLC (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB74_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.260e-34
Identity = 99/312 (31.73%), Postives = 162/312 (51.92%), Query Frame = 1 
Query:  100 AAMSNNDVLSWKRGWIPSAIAASLLFLP--LESVGLEVFEPGWARGIAAFVALEVVRVGAVGLLPYWWRDIARRTGPLTDRS-REQFGGQLTSLLLSSYLTWSIIRWDWQLTNKLPFIQTVGE-DHTGVVFNLMAIMLSYIVHDTWHLVRSWRVNRNRVMLIHHFVFAVISIMGMRFRQLPIHMRIHFIMFSAEMSTPLLNGRWLMRHIGLVHKSHVIMIATSFSFLVLFLVTRIMLYLFMILDII------QLYAELI-------------------------MPMPLRSVFLGAVVVSYVVNLYWAWLIV 930
            AA   + + S   GWIP A+  + L+     ++    ++   W+     + A E +R+ AV LLP WWR   RR G   +R+ RE FG Q  SL +S+Y    + +     + +LPF+ T  + D   ++ ++  ++ +Y++ DT HL+R+W ++ N  ML+HH +F+V+  +G    QLP H RIH ++FSAE+STPLLN RW++R +   H    ++   S +F +LFL +R+ LY  +I D++      QL   L+                          P   + +F  AV  SY++NLYW  +I+
Sbjct:    2 AAAKGDGLRSAAWGWIPGALVLAGLYCTGVFDTEDKSLWHTAWST----YAACEALRMVAVWLLPLWWR---RRRGGAPERAIRESFGTQAMSLAVSTYTVAHLAQLRLYASWELPFLHTAADADCIALIHHMTVVLGTYVICDTSHLIRTWHLSSNPAMLLHHAIFSVVLGLGAANPQLPPHYRIHVVLFSAELSTPLLNLRWILRWVA--HYKGRLVAPLSMAFALLFLFSRVGLYGALIADLVKKQPHRQLDVRLLRAACCLHTSFCGSSAWPVKTRRKLSFPRAQQDIFCAAVFCSYLLNLYWLIIII 304
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig787.16032.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
TLC1.980e-21692.77domain-containing protein n=1 Tax=Ectocarpus silic... [more]
TLC1.550e-21391.35domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
TLC2.260e-3431.73domain-containing protein n=1 Tax=Tribonema minus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig787contigE_fasciculatus_S2_contig787:18898..20892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1983
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionTRAM/LAG1/CLN8 homology domain
Ec32 orthologEc-17_001340.1
Cds size918
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842447.6942415-UTR-E_fasciculatus_S2_contig787:18897..189891696842447.6942415-UTR-E_fasciculatus_S2_contig787:18897..18989Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig787 18898..18989 +
1696842447.7048297-UTR-E_fasciculatus_S2_contig787:19001..190141696842447.7048297-UTR-E_fasciculatus_S2_contig787:19001..19014Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig787 19002..19014 +
1696842447.7263575-UTR-E_fasciculatus_S2_contig787:19932..208921696842447.7263575-UTR-E_fasciculatus_S2_contig787:19932..20892Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig787 19933..20892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842447.7149508-CDS-E_fasciculatus_S2_contig787:19014..199321696842447.7149508-CDS-E_fasciculatus_S2_contig787:19014..19932Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig787 19015..19932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig787.16032.1prot_E_fasciculatus_S2_contig787.16032.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig787 19015..19932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig787.16032.1

>prot_E_fasciculatus_S2_contig787.16032.1 ID=prot_E_fasciculatus_S2_contig787.16032.1|Name=mRNA_E_fasciculatus_S2_contig787.16032.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=306bp
MSNNDVLSWKRGWIPSAIAASLLFLPLESVGLEVFEPGWARGIAAFVALE
VVRVGAVGLLPYWWRDIARRTGPLTDRSREQFGGQLTSLLLSSYLTWSII
RWDWQLTNKLPFIQTVGEDHTGVVFNLMAIMLSYIVHDTWHLVRSWRVNR
NRVMLIHHFVFAVISIMGMRFRQLPIHMRIHFIMFSAEMSTPLLNGRWLM
RHIGLVHKSHVIMIATSFSFLVLFLVTRIMLYLFMILDIIQLYAELIMPM
PLRSVFLGAVVVSYVVNLYWAWLIVGALFFGNEGKRRGGPTLTVNHPDTQ
KSKDT*
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mRNA from alignment at E_fasciculatus_S2_contig787:18898..20892+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig787.16032.1 ID=mRNA_E_fasciculatus_S2_contig787.16032.1|Name=mRNA_E_fasciculatus_S2_contig787.16032.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1995bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig787:18898..20892+ (Ectocarpus fasciculatus EfasUO2)
TCACAACCGCAGCCGCGCGAGTTTCTCCTCCTCGCTGCGCCGAAGCAAAG
ACTGCCTGTTGGTGTTCGTGGAAACCGAGGGTGCCTGCCAGAGTAGTGGC
GGAGACGGCCAGCCGCCATGAGCAACAACGATGTGCTGTCGTGGAAGCGG
GGCTGGATACCCAGCGCTATCGCCGCGTCCCTGCTGTTCCTGCCGCTTGA
ATCCGTCGGTCTTGAGGTTTTCGAGCCGGGGTGGGCGCGGGGAATAGCGG
CATTCGTGGCCCTTGAGGTTGTGAGGGTGGGAGCGGTAGGGTTACTGCCG
TATTGGTGGAGAGATATCGCTAGGAGGACGGGTCCGTTGACGGACAGAAG
TCGGGAGCAGTTCGGGGGGCAACTTACCTCCCTCCTGCTGTCCAGCTACC
TCACCTGGAGCATCATCAGATGGGACTGGCAGCTGACGAACAAGCTGCCA
TTTATTCAGACGGTGGGGGAGGACCACACCGGCGTGGTGTTCAACCTGAT
GGCGATAATGCTGTCGTACATCGTGCACGACACCTGGCACCTGGTGCGGT
CGTGGCGAGTGAACCGCAACCGCGTGATGCTTATCCACCACTTTGTGTTC
GCCGTCATCAGCATCATGGGGATGAGGTTCCGGCAGCTGCCGATACACAT
GCGGATCCACTTCATCATGTTCTCGGCCGAGATGTCAACCCCGCTCCTCA
ACGGGCGTTGGCTGATGCGCCACATCGGGCTCGTCCACAAGTCCCACGTC
ATCATGATCGCGACTTCCTTTTCCTTCCTCGTGCTGTTCCTGGTGACAAG
GATAATGCTGTACCTCTTCATGATCCTCGACATCATCCAGCTCTACGCCG
AGCTGATCATGCCGATGCCCTTGCGCTCTGTTTTTCTGGGCGCGGTCGTT
GTGTCGTACGTAGTGAACCTGTACTGGGCCTGGCTCATCGTTGGCGCGCT
GTTCTTCGGGAACGAGGGCAAGCGGAGGGGGGGTCCAACGCTGACAGTGA
ACCACCCGGACACGCAGAAGTCGAAGGACACATGACGGCACCTTTGCGGG
CCTCTTGCCGCCTGCTGCGTAATTTTTCTGTTTGGATCTTGGAAGAGATA
TGATTTTGTAGCGCGTCCGTGCCCCGTGCTTCTTGGTGACAGGCTTGTTT
TTCGGATCGGATCGTTGTGTGTGTGGCTCGTGCTCTCCAGAGGAGGTCTT
AGGGTCGGGGGTGGGTGGTGTTGATGGTTGTCCTGCCCTTTTTTGTGTGT
TGACCGAGATAATTTAAGCAAAATTTGGTGTTACATTGTAAGGAGGGCTG
ATGATGTGGAGTAACTTAAAGTCGCGACCTTTTCGTCCGTACGTTCCGTG
GGCGATGGCGGCGGTGTGGTCGGGAAATCGTTTTTTTTTCCAGATTTTTT
TTTGTCATAGGGCTGCGCGTTGAGGCTCTTCGGACAACACGTTGCAGGCG
GGTTTAGCGCCGTCTCATGAGTTTGTAGCTCGTGGGTTCTATACGAAGGA
CGCGCTGTTCGCTTCGCGGCTGTGCTATGCAAACACCGATGTGGTGGGGT
CGGAGTGCTACTTTCATCGTGCAGGCTTTTCTTGGCACGTTTGCCTATCG
CTCGGCAATATCACACCCCATTGTGCGTGCTCACTTGGTATATGCGTGCA
TACTATTATTGGTACAACTTCTTGATGTTTTTCGGCTGTGTTGCCCCGAT
CTCCCCCCGTCCTAGACGTCGCTTAACGCTCCGGCCGAGGCGAAACTGCA
CATAACGCACGTCTGGTACACTTAGTTTGCCGTAGGATGTGATGAGCTGT
GGTACCAAGTACGGGGCGGTGTTTAAGAGAATTTTGTGTATGCATATGCA
TACAACCGCCTGCGATGAGATCAAATGTAACAGCTGCTGTTGACTACTTC
GAAATTTATTTAGTAGTTTTAGTAGTGTAGGCGCAAGACGACGACGACCG
ACGGTGAACAGTCGAAGGCCGAACAAATAAATGTTAATATCCCCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig787:18898..20892+

>mRNA_E_fasciculatus_S2_contig787.16032.1 ID=mRNA_E_fasciculatus_S2_contig787.16032.1|Name=mRNA_E_fasciculatus_S2_contig787.16032.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=918bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig787:18898..20892+ (Ectocarpus fasciculatus EfasUO2)
ATGAGCAACAACGATGTGCTGTCGTGGAAGCGGGGCTGGATACCCAGCGC
TATCGCCGCGTCCCTGCTGTTCCTGCCGCTTGAATCCGTCGGTCTTGAGG
TTTTCGAGCCGGGGTGGGCGCGGGGAATAGCGGCATTCGTGGCCCTTGAG
GTTGTGAGGGTGGGAGCGGTAGGGTTACTGCCGTATTGGTGGAGAGATAT
CGCTAGGAGGACGGGTCCGTTGACGGACAGAAGTCGGGAGCAGTTCGGGG
GGCAACTTACCTCCCTCCTGCTGTCCAGCTACCTCACCTGGAGCATCATC
AGATGGGACTGGCAGCTGACGAACAAGCTGCCATTTATTCAGACGGTGGG
GGAGGACCACACCGGCGTGGTGTTCAACCTGATGGCGATAATGCTGTCGT
ACATCGTGCACGACACCTGGCACCTGGTGCGGTCGTGGCGAGTGAACCGC
AACCGCGTGATGCTTATCCACCACTTTGTGTTCGCCGTCATCAGCATCAT
GGGGATGAGGTTCCGGCAGCTGCCGATACACATGCGGATCCACTTCATCA
TGTTCTCGGCCGAGATGTCAACCCCGCTCCTCAACGGGCGTTGGCTGATG
CGCCACATCGGGCTCGTCCACAAGTCCCACGTCATCATGATCGCGACTTC
CTTTTCCTTCCTCGTGCTGTTCCTGGTGACAAGGATAATGCTGTACCTCT
TCATGATCCTCGACATCATCCAGCTCTACGCCGAGCTGATCATGCCGATG
CCCTTGCGCTCTGTTTTTCTGGGCGCGGTCGTTGTGTCGTACGTAGTGAA
CCTGTACTGGGCCTGGCTCATCGTTGGCGCGCTGTTCTTCGGGAACGAGG
GCAAGCGGAGGGGGGGTCCAACGCTGACAGTGAACCACCCGGACACGCAG
AAGTCGAAGGACACATGA
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