mRNA_E_fasciculatus_S2_contig783.15999.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig783.15999.1
Unique NamemRNA_E_fasciculatus_S2_contig783.15999.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig783.15999.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS6_ECTSI)

HSP 1 Score: 562 bits (1449), Expect = 2.460e-198
Identity = 349/410 (85.12%), Postives = 360/410 (87.80%), Query Frame = 1 
Query:    1 MAKRKGKHLAREEPAARQHLEPLLPSSRHSAALAENALVVLVESGLLGPSWAKVAELQRASLFFCEVCRSCTPVRVRVTAQTPRAMWARTSRLGDGGGRDNGXXXDSSENDWRKVGAKGRKKWNGWRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASRLPRLRITSLVWAAPAKHLGDGSDLPSALRELTFDRGFNRRLVGVAWPPXXXXXXXXXXXXXELACQRRESRSGPGQPAGSTPPPPICAVGSCSGDDDVHRKGKRRENDPEIVPLLPASLEELTLGKHFNKPLPPRGMLXXXXXXXXXXXXXRQHRSVRDAVWPPTLKVVRFGEGILDEQRKKWPRLEAMRGLTPSPPTAPPGENMEGRRSFAWPAGFDRVEFWREGRVVVRLLGGTALDKDSLAWLVNNE 1230
            M KRKGKHLAREEPA RQ L  LL    H+AAL ENALVVLVESGLLGPSWA+V ELQRASLFFCE+CRSCTPVRVRV AQTPRAMWARTSR GDGGGRDN    DSSEND  KV AKGRKKW+ WRR   XXXXXXXXXXXXXXXXXXXXXXXXX  SRLPRL ITSLVWAAPAK+LGDGSDLP ALRELTFDRGFNRRLVG+AWPP XXXXXXXXXXXXELACQRRESRSGPGQPAGSTPPPPI A GSC GD   HR+GKRRENDPE VPLLPASLEELTLGKHFNKPLPPRG+ XXXXXXXXXXXXXRQHRSVR AVWP TLKVVRFGEG+L+EQRK WPRLEAMRGLT SP TAPPGEN E  + FAWP G DRVEFWREGRVVVRLLGGT LDKDSL WLVNNE
Sbjct:    1 MTKRKGKHLAREEPAVRQPLSQLLFYG-HTAALTENALVVLVESGLLGPSWAEVVELQRASLFFCELCRSCTPVRVRVDAQTPRAMWARTSRPGDGGGRDNRGGGDSSENDGSKVRAKGRKKWSLWRRQKQXXXXXXXXXXXXXXXXXXXXXXXXXX-SRLPRLSITSLVWAAPAKNLGDGSDLPLALRELTFDRGFNRRLVGLAWPPNXXXXXXXXXXXXELACQRRESRSGPGQPAGSTPPPPIAAGGSCRGDRG-HRRGKRRENDPETVPLLPASLEELTLGKHFNKPLPPRGLXXXXXXXXXXXXXXRQHRSVRHAVWPRTLKVVRFGEGMLEEQRKNWPRLEAMRGLTSSPSTAPPGENREETKGFAWPGGLDRVEFWREGRVVVRLLGGTTLDKDSLEWLVNNE 407
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig783.15999.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.460e-19885.12protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS6... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig783contigE_fasciculatus_S2_contig783:1175..3829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1233
Hectar predicted targeting categoryother localisation
Exons3
Cds size1233
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842444.6083746-CDS-E_fasciculatus_S2_contig783:1174..12681696842444.6083746-CDS-E_fasciculatus_S2_contig783:1174..1268Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig783 1175..1268 +
1696842444.619274-CDS-E_fasciculatus_S2_contig783:2144..30311696842444.619274-CDS-E_fasciculatus_S2_contig783:2144..3031Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig783 2145..3031 +
1696842444.629981-CDS-E_fasciculatus_S2_contig783:3577..38291696842444.629981-CDS-E_fasciculatus_S2_contig783:3577..3829Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig783 3578..3829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig783.15999.1prot_E_fasciculatus_S2_contig783.15999.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig783 1175..3829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig783.15999.1

>prot_E_fasciculatus_S2_contig783.15999.1 ID=prot_E_fasciculatus_S2_contig783.15999.1|Name=mRNA_E_fasciculatus_S2_contig783.15999.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=411bp
MAKRKGKHLAREEPAARQHLEPLLPSSRHSAALAENALVVLVESGLLGPS
WAKVAELQRASLFFCEVCRSCTPVRVRVTAQTPRAMWARTSRLGDGGGRD
NGGGGDSSENDWRKVGAKGRKKWNGWRRQKQQKAGGSQSNAGGFSNGGGG
GGGAAASASRLPRLRITSLVWAAPAKHLGDGSDLPSALRELTFDRGFNRR
LVGVAWPPTLRKLTFGSSFNRELACQRRESRSGPGQPAGSTPPPPICAVG
SCSGDDDVHRKGKRRENDPEIVPLLPASLEELTLGKHFNKPLPPRGMLPP
GLVSLTLGRNFRQHRSVRDAVWPPTLKVVRFGEGILDEQRKKWPRLEAMR
GLTPSPPTAPPGENMEGRRSFAWPAGFDRVEFWREGRVVVRLLGGTALDK
DSLAWLVNNE*
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mRNA from alignment at E_fasciculatus_S2_contig783:1175..3829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig783.15999.1 ID=mRNA_E_fasciculatus_S2_contig783.15999.1|Name=mRNA_E_fasciculatus_S2_contig783.15999.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2655bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig783:1175..3829+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGAAACGCAAGGGCAAGCATCTGGCCAGAGAGGAACCCGCAGCCCG
ACAGCATCTCGAACCACTGCTGCCATCCTCTCGTCACTCCGCAGGTGAAC
AACCGTTACCGTCCCTCCCTCATGATTGACTCCGCATCGCTGCTGGTCTT
GGCTGTGCAGGCCACTGTAGACTGCAATATCGCGATCAACAACACCAGGG
TTTTCGCTGCGCATGAGATCCCATCCACCAGGTGTGTCGAGTGCAAGAGA
CTATACCTACAAAGTCCTTCGCCGAATAAAAAGAAAAGTGCTGTAACAGC
TGACTACACATACATACACTCGTGTTGCGACCGAGTGTAAATGCATCAGC
AGTAGAAATTGATTTACGGGCAGCTGTAAACGGGCACTTGTCCATTTCCT
CATAGCTACATTTCATCAGCAAGCTCGCGTACACTCGGTTTTAGTTGTTA
GTCTCGTTGCCATGGCTTTCGCCTATCGTTGAAGCCAATCCCAAAATAAA
GGCATCCCCGCTCTCCCCCGAAGGAGGGGATTCTCCGCCCCGTGGAACTA
CCAAATAAAGTTAATACGACGTACATTCTCATCATGCAGCAGTAGTCTAG
GTGCATACGCTCTTGAAAAGCCGAAGTGCGTGCGTATCGGAGACATGTGT
CAGTGGCCGTTCAAACCCAGAGGTGCGGATTTGGCCCCATCTTCCCAAAT
GCGAGCGACTCACCGCACCTTTCGCCTCGTACGATGTTTTGTTCTCCTTT
TTTTCTTCGTGAACATGATTATCACTGATCTTAGCTACCACCTCATGGTA
CCAAGTTTATTAACTCGTTTTATTGCTCAAGAACGAGCTCTTGGGGCAGG
TCCGGTAATGGCCCCCTCTACAGCACTGTCCACATGCGGCAATGTCCACA
TCTCCCAATGACTGCATCATTCGGCAACCCCATGCGCTTATCAAAACCAA
CGTCACAGGGGACATAACAGCACTGGCGGAGAACGCGCTCGTGGTCCTGG
TTGAGTCCGGCCTCCTAGGCCCCTCTTGGGCCAAAGTGGCGGAGCTCCAG
CGCGCCTCCCTCTTCTTCTGCGAAGTGTGCCGGAGCTGCACCCCGGTGCG
CGTGCGAGTCACCGCCCAGACCCCAAGGGCCATGTGGGCCCGAACGAGTA
GGCTCGGCGACGGCGGTGGCCGGGACAACGGCGGCGGGGGAGATAGCAGC
GAAAACGACTGGAGAAAAGTCGGGGCCAAAGGGAGAAAAAAGTGGAACGG
GTGGCGGCGGCAGAAGCAACAGAAGGCGGGTGGGTCCCAAAGTAACGCCG
GCGGTTTCAGCAACGGCGGCGGCGGCGGCGGCGGCGCTGCTGCTTCTGCG
TCGCGACTCCCACGCCTGAGGATAACAAGCCTCGTGTGGGCGGCGCCGGC
GAAACACCTGGGCGACGGCAGCGACCTTCCCTCGGCGTTGAGAGAGCTGA
CCTTCGACCGAGGGTTCAACCGGCGCCTGGTCGGAGTCGCGTGGCCGCCT
ACGCTCCGAAAGCTGACCTTCGGCTCGAGTTTCAATCGAGAGCTCGCGTG
TCAGAGGAGGGAGAGTCGATCAGGGCCCGGACAGCCGGCAGGGTCCACAC
CGCCTCCACCGATTTGTGCTGTCGGCAGCTGCAGCGGCGATGATGATGTT
CACCGCAAGGGGAAGAGGAGGGAGAACGATCCGGAGATCGTTCCTCTCCT
TCCCGCAAGCCTCGAGGAGCTGACGCTCGGGAAGCACTTCAACAAGCCGC
TACCACCGCGGGGCATGCTGCCTCCCGGGCTGGTGTCCCTGACGCTGGGG
AGGAACTTTCGTCAGCACCGCAGCGTGCGCGACGCGGTGTGGCCCCCGAC
CCTCAAAGTGTGTGTTTATGTATGTGTTTCTTGAGTTAGCACGAACCGCG
CTGACCAATGATAATACCTCAGCCTTTTAGCGGGATAAAAAACTACCGAC
TGTGTGTGTGTGTGTATTTTCGTACATAGCATCGACCGCGATAACCGGCT
GACCGATGAAAATACATTAGTCAGTGCGGCTGAGAACAGAAAATACTTCC
AAAGGTCATGATCCGTGTGTGCGACAGTTTCTCGAGTTAGCATCAGCCGC
GCTACCGGGGTGACCAATAAATTTTCGCCAGTCTCAGTGCGGCTGATAGT
AGAAAATGCTTCGAAAGGCCATGGTGTGTGTGTGTGTGGGTGTATATGTT
TATTGAACCAGCATTGGTCGGTCACTGACTGACCAACGGAAATAGTCAGT
CTCAAAGCGGGACAAGAAACTGTGCGTGTGTCTTTTGTTACAACTTGCAT
CCCTTTCGTTTTCAACCTGTGTTGTTATTGCTTTCTTTCCGCCCGTGCGT
CGCTCTCCCACCTCTCATTTATCTGGGCATCCATCCATGCCTGCAACGAC
AAGGTCGTTAGGTTCGGGGAGGGCATCCTCGACGAGCAGCGGAAGAAGTG
GCCGCGCCTCGAGGCAATGCGGGGCCTGACGCCATCGCCCCCCACCGCTC
CCCCCGGGGAGAACATGGAGGGAAGGAGGAGCTTCGCGTGGCCGGCTGGG
TTTGACAGGGTGGAGTTTTGGCGGGAGGGTAGGGTGGTGGTGCGGCTTCT
CGGCGGGACCGCGCTCGACAAGGATTCCCTGGCATGGCTTGTGAACAATG
AGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig783:1175..3829+

>mRNA_E_fasciculatus_S2_contig783.15999.1 ID=mRNA_E_fasciculatus_S2_contig783.15999.1|Name=mRNA_E_fasciculatus_S2_contig783.15999.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1233bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig783:1175..3829+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGAAACGCAAGGGCAAGCATCTGGCCAGAGAGGAACCCGCAGCCCG
ACAGCATCTCGAACCACTGCTGCCATCCTCTCGTCACTCCGCAGCACTGG
CGGAGAACGCGCTCGTGGTCCTGGTTGAGTCCGGCCTCCTAGGCCCCTCT
TGGGCCAAAGTGGCGGAGCTCCAGCGCGCCTCCCTCTTCTTCTGCGAAGT
GTGCCGGAGCTGCACCCCGGTGCGCGTGCGAGTCACCGCCCAGACCCCAA
GGGCCATGTGGGCCCGAACGAGTAGGCTCGGCGACGGCGGTGGCCGGGAC
AACGGCGGCGGGGGAGATAGCAGCGAAAACGACTGGAGAAAAGTCGGGGC
CAAAGGGAGAAAAAAGTGGAACGGGTGGCGGCGGCAGAAGCAACAGAAGG
CGGGTGGGTCCCAAAGTAACGCCGGCGGTTTCAGCAACGGCGGCGGCGGC
GGCGGCGGCGCTGCTGCTTCTGCGTCGCGACTCCCACGCCTGAGGATAAC
AAGCCTCGTGTGGGCGGCGCCGGCGAAACACCTGGGCGACGGCAGCGACC
TTCCCTCGGCGTTGAGAGAGCTGACCTTCGACCGAGGGTTCAACCGGCGC
CTGGTCGGAGTCGCGTGGCCGCCTACGCTCCGAAAGCTGACCTTCGGCTC
GAGTTTCAATCGAGAGCTCGCGTGTCAGAGGAGGGAGAGTCGATCAGGGC
CCGGACAGCCGGCAGGGTCCACACCGCCTCCACCGATTTGTGCTGTCGGC
AGCTGCAGCGGCGATGATGATGTTCACCGCAAGGGGAAGAGGAGGGAGAA
CGATCCGGAGATCGTTCCTCTCCTTCCCGCAAGCCTCGAGGAGCTGACGC
TCGGGAAGCACTTCAACAAGCCGCTACCACCGCGGGGCATGCTGCCTCCC
GGGCTGGTGTCCCTGACGCTGGGGAGGAACTTTCGTCAGCACCGCAGCGT
GCGCGACGCGGTGTGGCCCCCGACCCTCAAAGTCGTTAGGTTCGGGGAGG
GCATCCTCGACGAGCAGCGGAAGAAGTGGCCGCGCCTCGAGGCAATGCGG
GGCCTGACGCCATCGCCCCCCACCGCTCCCCCCGGGGAGAACATGGAGGG
AAGGAGGAGCTTCGCGTGGCCGGCTGGGTTTGACAGGGTGGAGTTTTGGC
GGGAGGGTAGGGTGGTGGTGCGGCTTCTCGGCGGGACCGCGCTCGACAAG
GATTCCCTGGCATGGCTTGTGAACAATGAGTGA
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