mRNA_E_fasciculatus_S2_contig783.16000.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig783.16000.1
Unique NamemRNA_E_fasciculatus_S2_contig783.16000.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig783.16000.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig783contigE_fasciculatus_S2_contig783:5909..6446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size540
Hectar predicted targeting categoryother localisation
Exons1
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842444.5656261-CDS-E_fasciculatus_S2_contig783:5908..62801696842444.5656261-CDS-E_fasciculatus_S2_contig783:5908..6280Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig783 5909..6280 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842444.5768094-UTR-E_fasciculatus_S2_contig783:6280..64461696842444.5768094-UTR-E_fasciculatus_S2_contig783:6280..6446Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig783 6281..6446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig783.16000.1prot_E_fasciculatus_S2_contig783.16000.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig783 5909..6280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig783.16000.1

>prot_E_fasciculatus_S2_contig783.16000.1 ID=prot_E_fasciculatus_S2_contig783.16000.1|Name=mRNA_E_fasciculatus_S2_contig783.16000.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=124bp
RQRLGCSNTEEPQARGPTCRCVLVCNNSSCKNTRTLLHQCVLGGTPPSPK
ERDKYDREHHTAFRWFVYLDSSSGSSRGRSEHGQLRTPSFRPQPDINEKI
TSRVKVPSAKNSNTSAPTNTSTM*
back to top

mRNA from alignment at E_fasciculatus_S2_contig783:5909..6446+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig783.16000.1 ID=mRNA_E_fasciculatus_S2_contig783.16000.1|Name=mRNA_E_fasciculatus_S2_contig783.16000.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=538bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig783:5909..6446+ (Ectocarpus fasciculatus EfasUO2)
CGTCAACGTCTCGGTTGTTCAAACACAGAAGAACCACAGGCACGGGGACC
TACTTGCCGGTGCGTGCTTGTTTGCAACAACAGCAGCTGTAAAAACACGA
GAACGTTGCTGCATCAGTGCGTGCTTGGAGGTACTCCCCCTTCCCCCAAG
GAACGCGATAAATACGACAGGGAACACCACACCGCTTTTCGCTGGTTCGT
CTACCTCGACAGCAGCAGCGGCAGCAGCAGGGGCAGAAGCGAGCACGGCC
AACTAAGAACCCCCTCGTTCCGCCCGCAGCCAGATATCAACGAAAAAATC
ACCAGTAGGGTCAAGGTGCCAAGTGCCAAGAACTCCAACACCTCAGCACC
GACAAACACGAGCACCATGTAGTTACCGTCTGCACGGGACGAGGAGAAAC
TTCGGGAGAACCGCCATCGGCACTCAGTTTCGAAGCGTCGATGTTGAGTC
CATATCTCTCCTCGAGGCCCATCACCGCAACAGCAGTCATCAGCAAGACA
CCCCCTCCCCTCCCCGCCATTCGGATCTACGTCGCCAC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig783:5909..6446+

>mRNA_E_fasciculatus_S2_contig783.16000.1 ID=mRNA_E_fasciculatus_S2_contig783.16000.1|Name=mRNA_E_fasciculatus_S2_contig783.16000.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=372bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig783:5909..6446+ (Ectocarpus fasciculatus EfasUO2)
CGTCAACGTCTCGGTTGTTCAAACACAGAAGAACCACAGGCACGGGGACC
TACTTGCCGGTGCGTGCTTGTTTGCAACAACAGCAGCTGTAAAAACACGA
GAACGTTGCTGCATCAGTGCGTGCTTGGAGGTACTCCCCCTTCCCCCAAG
GAACGCGATAAATACGACAGGGAACACCACACCGCTTTTCGCTGGTTCGT
CTACCTCGACAGCAGCAGCGGCAGCAGCAGGGGCAGAAGCGAGCACGGCC
AACTAAGAACCCCCTCGTTCCGCCCGCAGCCAGATATCAACGAAAAAATC
ACCAGTAGGGTCAAGGTGCCAAGTGCCAAGAACTCCAACACCTCAGCACC
GACAAACACGAGCACCATGTAG
back to top