mRNA_E_fasciculatus_S2_contig7811.15980.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: Group (II intron reverse transcriptase/maturase (Fragment) n=2 Tax=Microcystis TaxID=1125 RepID=A0A552LH38_9CHRO) HSP 1 Score: 53.5 bits (127), Expect = 1.400e-6 Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 1
Query: 10 VASPTRQL-LYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKSGRERS 210
+ +PTR L +Q+GKC+ C + TP+ + +VDHI+P+SLGG NL LL CH KS + S
Sbjct: 359 IDTPTRVAKLLKKQQGKCSRCGQYFTPS-DLIEVDHILPLSLGGKDEYKNLQLLHRHCHDDKSASDGS 425
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: HNH (endonuclease n=1 Tax=Anaerobutyricum hallii TaxID=39488 RepID=A0A415G505_9FIRM) HSP 1 Score: 52.4 bits (124), Expect = 1.460e-6 Identity = 25/65 (38.46%), Postives = 40/65 (61.54%), Query Frame = 1
Query: 1 RKQVASPTRQLLYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKS 195
RK + R+LLY + GKC C K+IT ++ ++DHIIP+S+GG + NL + M ++ K+
Sbjct: 71 RKHFSQEVRKLLYQQAEGKCALCGKKITF--DEMELDHIIPISMGGADEVENLQVCCMPDNRYKA 133
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: HNH (endonuclease n=1 Tax=Pseudanabaena biceps TaxID=927669 RepID=A0A7Y5MFJ4_9CYAN) HSP 1 Score: 50.4 bits (119), Expect = 3.680e-6 Identity = 24/59 (40.68%), Postives = 33/59 (55.93%), Query Frame = 1
Query: 34 LYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKSGRERS 210
L+ Q GKC +C + +++DHIIP SLGG +NLHLL CH K+ + S
Sbjct: 33 LFKSQNGKCNHCGLTFRDG-DVWEIDHIIPRSLGGGNGYANLHLLHRHCHDTKTASDGS 90
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: HNH (endonuclease n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI0019BE3993) HSP 1 Score: 50.8 bits (120), Expect = 4.130e-6 Identity = 24/67 (35.82%), Postives = 36/67 (53.73%), Query Frame = 1
Query: 1 RKQVASPTRQLLYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKSGR 201
R + R L+ ++ R +C YC +T F++DH+IP SLGG T NL L C++ K+ R
Sbjct: 3 RTHIPQSLRALVAEDARHRCAYCQSAVTIVGMPFEIDHVIPESLGGLTVRENLCLCCSPCNERKACR 69
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: Group (II intron reverse transcriptase/maturase n=2 Tax=Nostoc TaxID=1177 RepID=A0A1U7I6H6_9NOSO) HSP 1 Score: 51.2 bits (121), Expect = 9.280e-6 Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 1
Query: 4 KQVASPTRQLLYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKSGRERS 210
K++ S ++L+ +Q+GKC YC T + ++DHIIP+SLGG N+ L CH K+ ++ S
Sbjct: 509 KEIPSLLAKILH-KQKGKCAYCGLTFTLEDQ-IELDHIIPISLGGKRKFDNIQALHRHCHDQKTAKDGS 575
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: HNH (endonuclease n=1 Tax=Bacillus cereus TaxID=1396 RepID=UPI001BA70A3C) HSP 1 Score: 50.8 bits (120), Expect = 1.150e-5 Identity = 24/75 (32.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query: 1 RKQVASPTRQLLYDEQRGKCTYCDKEITP-----NPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKSGRERS 210
RK + + ++ +Y RG+C YC+K++T N E++D HI+P++ G ++N+ LL C++ KSG++++
Sbjct: 204 RKNIPNWVKKAVYYRDRGRCVYCNKDLTGLVSIFNKENYD--HIVPLNEYGFNDVTNIQLLCRKCNEDKSGKQKN 276
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: RNA-directed (DNA polymerase n=1 Tax=Oscillatoria nigro-viridis PCC 7112 TaxID=179408 RepID=K9VG06_9CYAN) HSP 1 Score: 50.8 bits (120), Expect = 1.270e-5 Identity = 25/69 (36.23%), Postives = 39/69 (56.52%), Query Frame = 1
Query: 4 KQVASPTRQLLYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKSGRERS 210
K++ S + L+ +Q+GKC CD T + ++DHI+P+SLGG N+ L CH K+ R+ S
Sbjct: 509 KEIPSLLAKTLH-KQKGKCAQCDLTFTTEDQ-IELDHILPISLGGKKKFENIQALHRHCHDQKTARDGS 575
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: HNHc (domain-containing protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9SV00_9ZZZZ) HSP 1 Score: 50.1 bits (118), Expect = 1.340e-5 Identity = 22/63 (34.92%), Postives = 36/63 (57.14%), Query Frame = 1
Query: 4 KQVASPTRQLLYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAK 192
K+ A Q+L+ EQ+G C +C K + DF +DH +P+ GG C++N+ L C+ +K
Sbjct: 117 KKTALEIEQMLWQEQKGLCVFCKKNM--ERRDFHMDHYVPLIRGGKHCITNVVLTCSACNLSK 177
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: Group (II intron reverse transcriptase/maturase n=2 Tax=Pseudanabaena biceps TaxID=927669 RepID=A0A7Y5I9U9_9CYAN) HSP 1 Score: 50.4 bits (119), Expect = 1.720e-5 Identity = 24/59 (40.68%), Postives = 33/59 (55.93%), Query Frame = 1
Query: 34 LYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKSGRERS 210
L+ Q GKC +C + +++DHIIP SLGG +NLHLL CH K+ + S
Sbjct: 391 LFKSQNGKCNHCGLTFRDG-DVWEIDHIIPRSLGGGNGYANLHLLHRHCHDTKTASDGS 448
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: Group (II intron reverse transcriptase/maturase n=1 Tax=Scytonema millei VB511283 TaxID=1245923 RepID=A0A1D2P5R1_9CYAN) HSP 1 Score: 50.4 bits (119), Expect = 1.740e-5 Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 1
Query: 4 KQVASPTRQLLYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKSGRERS 210
K++ S ++L+ +Q+GKC +C T + ++DHIIP+SLGG N+ L CH K+ R+ S
Sbjct: 509 KEIPSLLAKILH-KQKGKCGHCGLTFTTEDQ-IELDHIIPISLGGKRKFDNIQALHRHCHDQKTARDGS 575 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7811.15980.1 >prot_E_fasciculatus_S2_contig7811.15980.1 ID=prot_E_fasciculatus_S2_contig7811.15980.1|Name=mRNA_E_fasciculatus_S2_contig7811.15980.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=70bp RKQVASPTRQLLYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLback to top mRNA from alignment at E_fasciculatus_S2_contig7811:1295..1504- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7811.15980.1 ID=mRNA_E_fasciculatus_S2_contig7811.15980.1|Name=mRNA_E_fasciculatus_S2_contig7811.15980.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=210bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7811:1295..1504- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7811:1295..1504- >mRNA_E_fasciculatus_S2_contig7811.15980.1 ID=mRNA_E_fasciculatus_S2_contig7811.15980.1|Name=mRNA_E_fasciculatus_S2_contig7811.15980.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=210bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7811:1295..1504- (Ectocarpus fasciculatus EfasUO2)back to top |