mRNA_E_fasciculatus_S2_contig7795.15961.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7795.15961.1
Unique NamemRNA_E_fasciculatus_S2_contig7795.15961.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLC4_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 3.360e-57
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 2
Query:   32 MSNRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQT 349
            MSNRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQT
Sbjct:    1 MSNRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQT 106          
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZX6_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.080e-38
Identity = 71/102 (69.61%), Postives = 90/102 (88.24%), Query Frame = 2
Query:   41 RNVQAKNRAPASIQITAEQILREAKDRQ-LDVE-VKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYR 340
            +++  KNRAPA IQITAEQILREAK+R  +D E +KAPRQ ITD EEL+ +RMRKRKEFED+IR+QR+H+G W+KY+TWEESQ E+ERARS+YER+L+V+YR
Sbjct:   19 KSIPVKNRAPAPIQITAEQILREAKERSFVDSETIKAPRQNITDLEELQTYRMRKRKEFEDSIRRQRQHLGTWMKYATWEESQKEYERARSIYERALDVEYR 120          
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Pre-mrna-splicing (factor clf1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBF3_9STRA)

HSP 1 Score: 128 bits (321), Expect = 7.660e-35
Identity = 72/104 (69.23%), Postives = 83/104 (79.81%), Query Frame = 2
Query:   38 NRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQT 349
            +R V  KNRAPA+IQITAEQILREA DR +  E KAPR  ITD EELR +R+ KRKEFED IR+QR  +G ++KY+ WEESQ EFERARSVYER L+VDYRN T
Sbjct:    2 SRKVLVKNRAPAAIQITAEQILREANDRVVQ-EDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTT 104          
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNW0_HETAK)

HSP 1 Score: 135 bits (340), Expect = 5.130e-34
Identity = 69/103 (66.99%), Postives = 89/103 (86.41%), Query Frame = 2
Query:   38 NRNVQAKNRAPASIQITAEQILREAKDRQLDVE-VKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRN 343
            N+ +Q KNRAPA IQITAEQILRE+K+R +D + +KAPRQ ITD EEL  +RMRKRKEFED+IR+QR+H+G W KY+ WEESQ E+ERARS+YER+L+VD+++
Sbjct:    6 NKAIQPKNRAPAPIQITAEQILRESKERSVDGQNIKAPRQNITDLEELTQYRMRKRKEFEDSIRRQRQHLGTWHKYAKWEESQKEYERARSIYERALDVDFKS 108          
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA95_9STRA)

HSP 1 Score: 135 bits (339), Expect = 9.530e-34
Identity = 69/88 (78.41%), Postives = 79/88 (89.77%), Query Frame = 2
Query:   38 NRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERA 301
            +RN+Q KNRAPA IQI+AEQILREA+DRQ+DVEVKAPRQQITD EEL VFRMRKRKE+ED+IR QR+HIG W+KY+ WEESQ EF RA
Sbjct:    2 SRNIQVKNRAPAPIQISAEQILREARDRQIDVEVKAPRQQITDAEELTVFRMRKRKEYEDSIRMQRQHIGTWIKYAAWEESQAEFARA 89          
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Uncharacterized (protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIJ4_ACACA)

HSP 1 Score: 120 bits (302), Expect = 2.160e-32
Identity = 65/103 (63.11%), Postives = 85/103 (82.52%), Query Frame = 2
Query:   41 RNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQT 349
            R  Q KN++ A IQITAEQI+REA++RQ + E++ P+Q+ITD+EEL  +R+RKRKEFED IR+QR  I NWLKY+ WE+SQ E ERAR+VYER+L+V+YRN T
Sbjct:    8 RAPQVKNKSAAEIQITAEQIIREAQERQ-EEEIQPPKQKITDKEELDEYRLRKRKEFEDQIRRQRGLITNWLKYAAWEDSQGEMERARNVYERALDVEYRNVT 109          
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2K5X6_9HEXA)

HSP 1 Score: 122 bits (306), Expect = 6.960e-32
Identity = 62/101 (61.39%), Postives = 80/101 (79.21%), Query Frame = 2
Query:   47 VQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQT 349
             + KN+APA IQITAEQ+LREAK+R L++    P+Q+I+D EEL  +++RKRK FED IRK R  IGNWLKY+ WEESQ E +R RS+YER+L+VD+RN T
Sbjct:   16 AKVKNKAPAEIQITAEQLLREAKERDLEIVAAPPKQKISDPEELAAYQLRKRKAFEDNIRKNRMMIGNWLKYAKWEESQGEIQRCRSIYERALDVDHRNPT 116          
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Uncharacterized (protein n=2 Tax=Myotis myotis TaxID=51298 RepID=A0A7J7ZY87_MYOMY)

HSP 1 Score: 119 bits (298), Expect = 1.660e-31
Identity = 60/99 (60.61%), Postives = 79/99 (79.80%), Query Frame = 2
Query:   47 VQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRN 343
             + KN+APA +QITAEQ+LREAK+R+L++    P+Q+ITDEEE   +++RKRK FED IRK R  I NW+KY+ WEES  E +RARS+YER+L+VDYRN
Sbjct:   16 AKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEEFNDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRN 114          
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Putative (crooked neck-like protein 1-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LIW3_STIJA)

HSP 1 Score: 121 bits (303), Expect = 2.300e-31
Identity = 60/101 (59.41%), Postives = 82/101 (81.19%), Query Frame = 2
Query:   47 VQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQT 349
             + KN+ PA +QITAEQILREAK+R+L+     P+Q+ITD EEL+ +++RKRKEFED +RK R  +GNW+KY+ WE+SQ E +RARS+YER+L+VD+RN T
Sbjct:   17 AKVKNKMPAEMQITAEQILREAKERELEAVPAPPKQKITDPEELQEYKLRKRKEFEDNLRKNRSVMGNWIKYAAWEDSQNEIDRARSIYERALDVDHRNIT 117          
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG80_PYTOL)

HSP 1 Score: 128 bits (321), Expect = 2.720e-31
Identity = 67/103 (65.05%), Postives = 84/103 (81.55%), Query Frame = 2
Query:   41 RNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQT 349
            R    KNRAPA IQITAEQIL+EA+DR+ DV +K  R++ITD EEL  +RM KRK FED IR+QR HIG W+KY+TWEESQ EF+RARS++ER+++VDY+N T
Sbjct:    3 RKTGVKNRAPAPIQITAEQILQEAQDRKDDV-LKPTRRRITDSEELNEYRMSKRKAFEDEIRRQRHHIGTWMKYATWEESQQEFKRARSIFERAIDVDYKNPT 104          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.360e-57100.00protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLC4... [more]
Hypothetical1.080e-3869.61protein (Fragment) n=1 Tax=Fibrocapsa japonica Tax... [more]
Pre-mrna-splicing7.660e-3569.23factor clf1 n=1 Tax=Nannochloropsis gaditana TaxID... [more]
Hypothetical5.130e-3466.99protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Uncharacterized9.530e-3478.41protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized2.160e-3263.11protein n=1 Tax=Acanthamoeba castellanii str. Neff... [more]
Hypothetical6.960e-3261.39protein (Fragment) n=1 Tax=Allacma fusca TaxID=392... [more]
Uncharacterized1.660e-3160.61protein n=2 Tax=Myotis myotis TaxID=51298 RepID=A0... [more]
Putative2.300e-3159.41crooked neck-like protein 1-like n=1 Tax=Stichopus... [more]
Uncharacterized2.720e-3165.05protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7795contigE_fasciculatus_S2_contig7795:4863..6711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score199.9
Seed ortholog evalue8.7e-49
Seed eggNOG ortholog2880.D8LLC4
Preferred nameCRNKL1
Model size499
KEGG koko:K12869
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0071007,GO:0071010,GO:0071011,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Exons3
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsKOG1915@1,KOG1915@2759
Cds size468
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842441.0995934-UTR-E_fasciculatus_S2_contig7795:4862..48931696842441.0995934-UTR-E_fasciculatus_S2_contig7795:4862..4893Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7795 4863..4893 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842441.1138551-CDS-E_fasciculatus_S2_contig7795:4893..50701696842441.1138551-CDS-E_fasciculatus_S2_contig7795:4893..5070Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7795 4894..5070 +
1696842441.125047-CDS-E_fasciculatus_S2_contig7795:5943..60811696842441.125047-CDS-E_fasciculatus_S2_contig7795:5943..6081Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7795 5944..6081 +
1696842441.1359649-CDS-E_fasciculatus_S2_contig7795:6558..67111696842441.1359649-CDS-E_fasciculatus_S2_contig7795:6558..6711Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7795 6559..6711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7795.15961.1prot_E_fasciculatus_S2_contig7795.15961.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7795 4894..6711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7795.15961.1

>prot_E_fasciculatus_S2_contig7795.15961.1 ID=prot_E_fasciculatus_S2_contig7795.15961.1|Name=mRNA_E_fasciculatus_S2_contig7795.15961.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=156bp
MSNRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELR
VFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEV
DYRNQTIWLRYAEFEMRCKFPNHARNVWDRAVALLPRVDQFWYKYSYMEV
SEGQTA
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mRNA from alignment at E_fasciculatus_S2_contig7795:4863..6711+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7795.15961.1 ID=mRNA_E_fasciculatus_S2_contig7795.15961.1|Name=mRNA_E_fasciculatus_S2_contig7795.15961.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1849bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7795:4863..6711+ (Ectocarpus fasciculatus EfasUO2)
GGGGCTTTGCCGCCACCACCACTGATACACCATGTCGAACCGCAACGTGC AGGCTAAGAATCGCGCTCCGGCGTCGATCCAGATCACCGCGGAGCAGATC CTGCGAGAGGCAAAGGACCGGCAGCTGGATGTCGAGGTCAAGGCTCCGCG GCAGCAGATCACCGATGAGGAGGAGCTGCGCGTCTTCCGGATGCGGAAGC GGAAGGAGGTGCGTTGAGAGACTTTTGGTTGAGATTCTAGACAATCAGCA GAGCGCGGTCGGCGTCGGGGGGGGCTTACACTGCTGTGTGATATGTTGGG GTGCCATTGTTGTTGTTGTTGTTTGATGGGCAGAGAGCGGAACGAGAGCA GCTGCCGCTCCCCAACCGCCTCTGGAGTGTCTGCTGCAGGCACCAGCTAT AGGGAAGCTTCGTCGTCAGCGACCTTGGGTGGCTGAACAGCATTTCTCGG CTGCACTCGTGGTTGCTGTGCGTTATTATTGTTGGAGCGCGTTGCCCCCC CTCTTCCCTTTGATCTGTTTTTCCGCCCACAGCCCAGTTCCCAGTATGTA TAGGGGGGTGGTATATTCCGTACATGGGTATGCGGCTGCTGTTGGCGGGG CAGCGAAAGACGACGACGACCGCCATCAGAGGGGGGAGATTCAGATCAGT TAGTGTTGACCCGACACCGAGTAGTCGTTGCTGCAACTGCTTGATTATCC ACCCACACAGCTATAAGTTTGTGCTCTTATTTATTGTTTCGAGAGTCTGC CGTCTGCTGATGGCTACTTGTACAGCAGTAGTGCGGCGACACTTGCAGAC AGGTCACGGGGCGACAGAGAATGGAGTTTTAATGCATATGATCGACCGCG CTAACCGGCTGACCAATGACCAATGAGAAGGCCTCGTTCTTGGTGGGCCA AGAAAAGAAGGGCGCTTTTCTTATCCTTCGTGTGTGTTGAAGATCTGCTG GGCGGACATGAAGTGCATTTTCATAGCCATGCAAAGAGCGTATGGTATGC TGCACCGGTCGCTCTCACAACAGTCGTATCACGACCTTCCCGCTGTCTTT GTGTGCCATTTCACTCTCCTTGGCCCTTCAGTTCGAAGATGCCATTCGAA AGCAGCGAGAGCACATCGGCAACTGGTTGAAGTACTCTACGTGGGAGGAG TCGCAGATGGAGTTCGAGCGCGCGCGGAGCGTCTACGAGCGCTCCCTGGA GGTTGACTACCGCAATCAGGTTAGTCGTTTTGTGTATGTTTTTTGTTATT TGCATCGACCGCGCTACCCGGCTAAGACCGATGAGGGTGTGTGTGTGTCC ATGGTTGTTGAAATAGCATCGACCGTGCTAACCGACCGAGCAACAGAAAA GCGTCAGCGGGATAACACGCGAACAACACGCACTCCTAGTCATGGGGGCT TCTACCCGACAGAGGGGAAATTAGTTTGACGACAGCGTCCTTCCTCTGAA GTAGTACAACAAAGCAGCCTCTGCGGCCGGCACTTCCCGGTCACCACGTG CCCCTGGGAGGCAGAGACGGCCGTTTAAAAATCGGCTTGTTTGGAAAATG GGCGTGTCCACGGAAGTGTCTGTGTAAGTACTGCAAAGGGCGAGGGATGG ACTCACAATGACGTTGTTAAGGGCAGGAACAACCGGTTTTATTCCCCCCC TCCCCCCTCCACCGTTTTCTTTCTCTCGCTGCAATCTCTCGGCAAGACGA TCTGGCTGCGCTACGCCGAGTTCGAGATGAGGTGCAAGTTCCCCAACCAC GCCCGCAACGTGTGGGACCGGGCGGTCGCCCTGCTGCCGCGGGTGGACCA GTTCTGGTACAAGTACAGCTACATGGAGGTGAGCGAGGGACAGACAGCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7795:4863..6711+

>mRNA_E_fasciculatus_S2_contig7795.15961.1 ID=mRNA_E_fasciculatus_S2_contig7795.15961.1|Name=mRNA_E_fasciculatus_S2_contig7795.15961.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=468bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7795:4863..6711+ (Ectocarpus fasciculatus EfasUO2)
ATGTCGAACCGCAACGTGCAGGCTAAGAATCGCGCTCCGGCGTCGATCCA
GATCACCGCGGAGCAGATCCTGCGAGAGGCAAAGGACCGGCAGCTGGATG
TCGAGGTCAAGGCTCCGCGGCAGCAGATCACCGATGAGGAGGAGCTGCGC
GTCTTCCGGATGCGGAAGCGGAAGGAGTTCGAAGATGCCATTCGAAAGCA
GCGAGAGCACATCGGCAACTGGTTGAAGTACTCTACGTGGGAGGAGTCGC
AGATGGAGTTCGAGCGCGCGCGGAGCGTCTACGAGCGCTCCCTGGAGGTT
GACTACCGCAATCAGACGATCTGGCTGCGCTACGCCGAGTTCGAGATGAG
GTGCAAGTTCCCCAACCACGCCCGCAACGTGTGGGACCGGGCGGTCGCCC
TGCTGCCGCGGGTGGACCAGTTCTGGTACAAGTACAGCTACATGGAGGTG
AGCGAGGGACAGACAGCA
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