mRNA_E_fasciculatus_S2_contig7795.15961.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLC4_ECTSI) HSP 1 Score: 200 bits (508), Expect = 3.360e-57 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 2
Query: 32 MSNRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQT 349
MSNRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQT
Sbjct: 1 MSNRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQT 106
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZX6_9STRA) HSP 1 Score: 137 bits (344), Expect = 1.080e-38 Identity = 71/102 (69.61%), Postives = 90/102 (88.24%), Query Frame = 2
Query: 41 RNVQAKNRAPASIQITAEQILREAKDRQ-LDVE-VKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYR 340
+++ KNRAPA IQITAEQILREAK+R +D E +KAPRQ ITD EEL+ +RMRKRKEFED+IR+QR+H+G W+KY+TWEESQ E+ERARS+YER+L+V+YR
Sbjct: 19 KSIPVKNRAPAPIQITAEQILREAKERSFVDSETIKAPRQNITDLEELQTYRMRKRKEFEDSIRRQRQHLGTWMKYATWEESQKEYERARSIYERALDVEYR 120
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Pre-mrna-splicing (factor clf1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBF3_9STRA) HSP 1 Score: 128 bits (321), Expect = 7.660e-35 Identity = 72/104 (69.23%), Postives = 83/104 (79.81%), Query Frame = 2
Query: 38 NRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQT 349
+R V KNRAPA+IQITAEQILREA DR + E KAPR ITD EELR +R+ KRKEFED IR+QR +G ++KY+ WEESQ EFERARSVYER L+VDYRN T
Sbjct: 2 SRKVLVKNRAPAAIQITAEQILREANDRVVQ-EDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRNTT 104
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNW0_HETAK) HSP 1 Score: 135 bits (340), Expect = 5.130e-34 Identity = 69/103 (66.99%), Postives = 89/103 (86.41%), Query Frame = 2
Query: 38 NRNVQAKNRAPASIQITAEQILREAKDRQLDVE-VKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRN 343
N+ +Q KNRAPA IQITAEQILRE+K+R +D + +KAPRQ ITD EEL +RMRKRKEFED+IR+QR+H+G W KY+ WEESQ E+ERARS+YER+L+VD+++
Sbjct: 6 NKAIQPKNRAPAPIQITAEQILRESKERSVDGQNIKAPRQNITDLEELTQYRMRKRKEFEDSIRRQRQHLGTWHKYAKWEESQKEYERARSIYERALDVDFKS 108
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA95_9STRA) HSP 1 Score: 135 bits (339), Expect = 9.530e-34 Identity = 69/88 (78.41%), Postives = 79/88 (89.77%), Query Frame = 2
Query: 38 NRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERA 301
+RN+Q KNRAPA IQI+AEQILREA+DRQ+DVEVKAPRQQITD EEL VFRMRKRKE+ED+IR QR+HIG W+KY+ WEESQ EF RA
Sbjct: 2 SRNIQVKNRAPAPIQISAEQILREARDRQIDVEVKAPRQQITDAEELTVFRMRKRKEYEDSIRMQRQHIGTWIKYAAWEESQAEFARA 89
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Uncharacterized (protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIJ4_ACACA) HSP 1 Score: 120 bits (302), Expect = 2.160e-32 Identity = 65/103 (63.11%), Postives = 85/103 (82.52%), Query Frame = 2
Query: 41 RNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQT 349
R Q KN++ A IQITAEQI+REA++RQ + E++ P+Q+ITD+EEL +R+RKRKEFED IR+QR I NWLKY+ WE+SQ E ERAR+VYER+L+V+YRN T
Sbjct: 8 RAPQVKNKSAAEIQITAEQIIREAQERQ-EEEIQPPKQKITDKEELDEYRLRKRKEFEDQIRRQRGLITNWLKYAAWEDSQGEMERARNVYERALDVEYRNVT 109
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2K5X6_9HEXA) HSP 1 Score: 122 bits (306), Expect = 6.960e-32 Identity = 62/101 (61.39%), Postives = 80/101 (79.21%), Query Frame = 2
Query: 47 VQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQT 349
+ KN+APA IQITAEQ+LREAK+R L++ P+Q+I+D EEL +++RKRK FED IRK R IGNWLKY+ WEESQ E +R RS+YER+L+VD+RN T
Sbjct: 16 AKVKNKAPAEIQITAEQLLREAKERDLEIVAAPPKQKISDPEELAAYQLRKRKAFEDNIRKNRMMIGNWLKYAKWEESQGEIQRCRSIYERALDVDHRNPT 116
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Uncharacterized (protein n=2 Tax=Myotis myotis TaxID=51298 RepID=A0A7J7ZY87_MYOMY) HSP 1 Score: 119 bits (298), Expect = 1.660e-31 Identity = 60/99 (60.61%), Postives = 79/99 (79.80%), Query Frame = 2
Query: 47 VQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRN 343
+ KN+APA +QITAEQ+LREAK+R+L++ P+Q+ITDEEE +++RKRK FED IRK R I NW+KY+ WEES E +RARS+YER+L+VDYRN
Sbjct: 16 AKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEEFNDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRN 114
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Putative (crooked neck-like protein 1-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LIW3_STIJA) HSP 1 Score: 121 bits (303), Expect = 2.300e-31 Identity = 60/101 (59.41%), Postives = 82/101 (81.19%), Query Frame = 2
Query: 47 VQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQT 349
+ KN+ PA +QITAEQILREAK+R+L+ P+Q+ITD EEL+ +++RKRKEFED +RK R +GNW+KY+ WE+SQ E +RARS+YER+L+VD+RN T
Sbjct: 17 AKVKNKMPAEMQITAEQILREAKERELEAVPAPPKQKITDPEELQEYKLRKRKEFEDNLRKNRSVMGNWIKYAAWEDSQNEIDRARSIYERALDVDHRNIT 117
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG80_PYTOL) HSP 1 Score: 128 bits (321), Expect = 2.720e-31 Identity = 67/103 (65.05%), Postives = 84/103 (81.55%), Query Frame = 2
Query: 41 RNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQT 349
R KNRAPA IQITAEQIL+EA+DR+ DV +K R++ITD EEL +RM KRK FED IR+QR HIG W+KY+TWEESQ EF+RARS++ER+++VDY+N T
Sbjct: 3 RKTGVKNRAPAPIQITAEQILQEAQDRKDDV-LKPTRRRITDSEELNEYRMSKRKAFEDEIRRQRHHIGTWMKYATWEESQQEFKRARSIFERAIDVDYKNPT 104 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7795.15961.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7795.15961.1 >prot_E_fasciculatus_S2_contig7795.15961.1 ID=prot_E_fasciculatus_S2_contig7795.15961.1|Name=mRNA_E_fasciculatus_S2_contig7795.15961.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=156bp MSNRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRback to top mRNA from alignment at E_fasciculatus_S2_contig7795:4863..6711+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7795.15961.1 ID=mRNA_E_fasciculatus_S2_contig7795.15961.1|Name=mRNA_E_fasciculatus_S2_contig7795.15961.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1849bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7795:4863..6711+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7795:4863..6711+ >mRNA_E_fasciculatus_S2_contig7795.15961.1 ID=mRNA_E_fasciculatus_S2_contig7795.15961.1|Name=mRNA_E_fasciculatus_S2_contig7795.15961.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=468bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7795:4863..6711+ (Ectocarpus fasciculatus EfasUO2)back to top |