mRNA_E_fasciculatus_S2_contig7746.15912.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7746.15912.1
Unique NamemRNA_E_fasciculatus_S2_contig7746.15912.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7746.15912.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV6_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 8.700e-57
Identity = 147/203 (72.41%), Postives = 165/203 (81.28%), Query Frame = 1 
Query:    1 SLVATNFPSGLREIFLGCAFDQPIEAVVWPQRLERLSLPGFXXXXXXXXXXXXXKSLEFTPPWEIRPREDPDTRVHQIGCYGDCFNSPFTTLPANLECLWLGDKFDHSLEGVNWPSXXXXXXXXXXXXXXXXXXXXXXXXRNLYLVREVDWAERPPSGCEVTIAKDDDPDDIYYDDYSDFHDDA--FD-DQNYRAYYEDFYGL 600
            SLV  NFP+GLREIFLG AFDQPIE VVWPQ LERLSLPG  XXXXXXXXXXXXKSLEFT P +I  REDP+TR+ ++   G  F+SPFTTLPA+LE LWLGD+F  SLE VNWP XXXXXXXXXXXXXXXXXXXXXXXXRNLYLVREVDW ERPPSGC+VT+ KDD  DD+Y  DY D +D A  +D D +YR  ++D+Y L
Sbjct:  187 SLVGANFPAGLREIFLGDAFDQPIEDVVWPQGLERLSLPGCNXXXXXXXXXXXXKSLEFTSPLQICLREDPNTRLDELDLVG-VFDSPFTTLPASLETLWLGDEFGQSLESVNWPXXXXXXXXXXXXXXXXXXXXXXXXXRNLYLVREVDWVERPPSGCKVTVVKDDPDDDMYDVDYDDLYDGAPVYDVDHDYRVAFKDYYEL 388
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BLAST of mRNA_E_fasciculatus_S2_contig7746.15912.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK73_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 4.570e-48
Identity = 126/172 (73.26%), Postives = 141/172 (81.98%), Query Frame = 1 
Query:    1 SLVATNF--PSGLREIFLGCAFDQPIEAVVWPQRLERLSLPGFXXXXXXXXXXXXXKSLEFTPPWEIRPREDPDTRVHQIGCYGDCFNSPFTTLPANLECLWLGDKFDHSLEGVNWPSXXXXXXXXXXXXXXXXXXXXXXXXRNLYLVREVDWAERPPSGCEVTIAKDDDPD 510
            SLV  NF  PSGLR+IFLG AFDQPI+ VVWPQ L+RLS+P FXXXXXXXXXX         PPWEIR  EDP+TR+ ++G Y D FN PFT LPA+LE LWLGDKFDHSLEG+NWP XXXXXXXXXXXXXXXXXXXXXXXXRNL L+REV+W ERPPSGC+V IA++DD D
Sbjct:   99 SLVGANFSFPSGLRDIFLGAAFDQPIQDVVWPQGLQRLSVPRFXXXXXXXXXXPA-----LNPPWEIRLTEDPNTRLDELGSYWDRFNCPFTHLPASLETLWLGDKFDHSLEGINWPXXXXXXXXXXXXXXXXXXXXXXXXXRNLCLLREVNWIERPPSGCKVIIAQEDDLD 265
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BLAST of mRNA_E_fasciculatus_S2_contig7746.15912.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP2_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 5.540e-44
Identity = 127/166 (76.51%), Postives = 138/166 (83.13%), Query Frame = 1 
Query:    1 SLVATNFPSGLREIFLGCAFDQPIEAVVWPQRLERLSLPGFXXXXXXXXXXXXXKSLEFTPPWEIRPREDPDTRVHQIGCYGDCFNSPFTTLPANLECLWLGDKFDHSLEGVNWPSXXXXXXXXXXXXXXXXXXXXXXXXRNLYLVREVDWAERPPSGCEVTIAKD 498
            SLV  NFPSGLREIFLG AFDQPIE VVWPQ LERLSLPG  XXXXXXXXXXXXKSLEF+PP +I  REDP+TR+  +  + D FNSPFT LPA+LE LWLG+ F  SLEGVNWPSXXXXXXXXXXXXXXXXXXXXXXXX+NLYLV E+DW E P S C +TI KD
Sbjct:  187 SLVGANFPSGLREIFLGDAFDQPIEDVVWPQGLERLSLPGCNXXXXXXXXXXXXKSLEFSPPSQICLREDPNTRLDVLEPHRDRFNSPFTKLPASLEALWLGNNFCQSLEGVNWPSXXXXXXXXXXXXXXXXXXXXXXXXQNLYLVNEMDWLEYPES-CMLTIVKD 351
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BLAST of mRNA_E_fasciculatus_S2_contig7746.15912.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHT8_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 6.650e-38
Identity = 126/193 (65.28%), Postives = 140/193 (72.54%), Query Frame = 1 
Query:    1 SLVATNFPSGLREIFLGCAFDQPIEAVVWPQRLERLSLPGFXXXXXXXXXXXXXKSLEFTPPWEIRPREDPDTRVHQIGCYGDCFNSPFTTLPANLECLWLGDKFDHSLEGVNWPSXXXXXXXXXXXXXXXXXXXXXXXXRNLYLVREVDWAERPPSGCEVTIAKDDDPDDIYYDDYSDFHDDAFDDQNYRAY 579
            SLV  NFPS LREIFLG AFDQPIE VVWP  LERLS PG  XXXXXXXXXXXX    F+PP +I  REDP+TR+  +  + D FNSPFT LPA+LE LWLG+ F  SLEGVNW  XXXXXXXXXXXXXXXXXXXXXXXX+NLYLV E+DW E P S C VTI KD D +   +D       D FDD ++  Y
Sbjct:  130 SLVGANFPSDLREIFLGDAFDQPIEDVVWPSGLERLSFPGCNXXXXXXXXXXXXXXXXFSPPSQICLREDPNTRLDVLEPHRDRFNSPFTNLPASLEALWLGNNFCQSLEGVNWXXXXXXXXXXXXXXXXXXXXXXXXXXQNLYLVNEMDWLEYPKS-CMVTIVKDYDTESQSFD----AERDGFDDLDHDFY 317
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7746.15912.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY0_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.870e-17
Identity = 66/193 (34.20%), Postives = 84/193 (43.52%), Query Frame = 1 
Query:    4 LVATNFPSGLREIFLGCAFDQPIEAVVW--------------------PQRL--------ERLSLPGFXXXXXXXXXXXXXKSLEFTPPWEIRPREDPDTRVHQIGCYGDCFNSPFTTLPANLECLWLGDKFDHSLEGVNWPSXXXXXXXXXXXXXXXXXXXXXXXXRNLYLVREVDWAERPPSGCEVTIAKD 498
            L    +P G++EI L    D+ IE ++W                    P +         + L LPG              KSLE + P E+R  E P+T +H+    G  F+SPFTTLPA+L  LWLGD F  SLE V WPS                        RNLYLV E++WAE PP GC V +  D
Sbjct:   60 LSEVQWPEGIKEIDL-LLLDEVIEGMLWWVWSAFHSARSDFPTSFYYFPSKTLCGHKDLRDCLYLPGCDQPIDNLWWAPALKSLESSTPSEVRLMETPNTNLHEPRLVG-VFDSPFTTLPASLATLWLGDSFCQSLEDVTWPSGLVTLGLGSTLSEFDSVSWSSNL-RNLYLVDEIEWAEYPP-GCRVNVVMD 248
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7746.15912.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized8.700e-5772.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.570e-4873.26protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.540e-4476.51protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.650e-3865.28protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.870e-1734.20protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7746contigE_fasciculatus_S2_contig7746:5407..6716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1312
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_000390.2
Cds size603
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842436.5545907-CDS-E_fasciculatus_S2_contig7746:5406..60091696842436.5545907-CDS-E_fasciculatus_S2_contig7746:5406..6009Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7746 5407..6009 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842436.5651083-UTR-E_fasciculatus_S2_contig7746:6009..67161696842436.5651083-UTR-E_fasciculatus_S2_contig7746:6009..6716Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7746 6010..6716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7746.15912.1prot_E_fasciculatus_S2_contig7746.15912.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7746 5407..6009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7746.15912.1

>prot_E_fasciculatus_S2_contig7746.15912.1 ID=prot_E_fasciculatus_S2_contig7746.15912.1|Name=mRNA_E_fasciculatus_S2_contig7746.15912.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=201bp
SLVATNFPSGLREIFLGCAFDQPIEAVVWPQRLERLSLPGFNQPIDNVRW
PPALKSLEFTPPWEIRPREDPDTRVHQIGCYGDCFNSPFTTLPANLECLW
LGDKFDHSLEGVNWPSGLATLGLGDRFGGLNRGVSWPSNLRNLYLVREVD
WAERPPSGCEVTIAKDDDPDDIYYDDYSDFHDDAFDDQNYRAYYEDFYGL
*
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mRNA from alignment at E_fasciculatus_S2_contig7746:5407..6716+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7746.15912.1 ID=mRNA_E_fasciculatus_S2_contig7746.15912.1|Name=mRNA_E_fasciculatus_S2_contig7746.15912.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1310bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7746:5407..6716+ (Ectocarpus fasciculatus EfasUO2)
TCGCTTGTTGCGACCAATTTTCCTTCGGGCCTGCGAGAGATCTTCCTTGG
GTGCGCCTTTGACCAGCCCATCGAAGCCGTCGTGTGGCCGCAAAGACTTG
AGAGGCTGTCCCTCCCTGGCTTCAATCAGCCTATTGACAACGTGAGGTGG
CCGCCGGCATTGAAGTCCTTGGAATTTACCCCGCCGTGGGAGATCCGCCC
ACGGGAAGACCCAGACACGCGTGTGCACCAAATAGGATGCTATGGGGACT
GTTTCAACTCCCCCTTCACTACTTTGCCGGCGAACCTTGAGTGTCTATGG
CTTGGTGACAAGTTCGATCATTCGCTTGAGGGCGTCAACTGGCCGAGTGG
GCTTGCCACCCTGGGACTTGGTGATAGGTTTGGGGGGTTGAATCGTGGTG
TATCGTGGCCCTCGAATCTTCGAAACCTGTACTTGGTGAGAGAGGTCGAT
TGGGCAGAGCGCCCCCCTTCCGGCTGCGAGGTTACGATCGCGAAGGATGA
CGACCCGGATGACATTTACTACGACGACTACAGTGACTTCCACGATGACG
CATTCGATGATCAAAACTACCGGGCGTACTACGAGGACTTCTATGGATTG
TGACGGATATAACGCGCCTTTAGTCTAGCGCTGAATGTGGTAAAGGAGGG
GAAATCTTCGTGGTGCTAGCAAGTCAACAATGGGGTTGCTCTCATAACGT
GTTGGTAGGATGGTCTTCTAGTACGAGCAAGGAGTTACGTCGGTGTTCGG
TTAGCTCCGTCGTGGGTCGTGGTTCTATAGGGCACTGTTCCATTGCCCAT
AGGTGCTGTTGGAGTAAGAGACAGGGATTGTCAAGGTCGCCACGGTAGTC
TAGTTGGTATCCCGCAACATCTTGTTTTGGCGGGGGTCAGGGGTTCGAAT
CCCGACGTAAGCGAGCTATTCTTGCTAAGCATGTTTTTCGCTCGGTTCCG
TTCCTGGCCTGGGTGGAAAGCCCTAGTTGGTGTGTACACAGTGCTGCACC
CTTCTTGCATTCAGAATTGAAGGTAGGACACCCGCAGGACGGGCGGGTAC
AAGAAGAGGAACTTGTCCGTGTGACCATGGGTCGGAGTAAACGGCTCAAA
TGCTGTGATGGCCGATTTGAAGTTGAAGAGAAAATGAAATAATACATTGG
CGCCGCTCGATCAGTCCCAGCTCTTCGTCTGTCGGTGTGTTTACCCGTAT
CACACATCCCGTCCTGCCAACCACGACTAATCCCTCCAGTGTTGCAACCC
TACCGTTGACGTCTGGGCTATCGTATTCAGTTCAATTGGCATTTGCAGTT
TTGGGCAAAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7746:5407..6716+

>mRNA_E_fasciculatus_S2_contig7746.15912.1 ID=mRNA_E_fasciculatus_S2_contig7746.15912.1|Name=mRNA_E_fasciculatus_S2_contig7746.15912.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=603bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7746:5407..6716+ (Ectocarpus fasciculatus EfasUO2)
TCGCTTGTTGCGACCAATTTTCCTTCGGGCCTGCGAGAGATCTTCCTTGG
GTGCGCCTTTGACCAGCCCATCGAAGCCGTCGTGTGGCCGCAAAGACTTG
AGAGGCTGTCCCTCCCTGGCTTCAATCAGCCTATTGACAACGTGAGGTGG
CCGCCGGCATTGAAGTCCTTGGAATTTACCCCGCCGTGGGAGATCCGCCC
ACGGGAAGACCCAGACACGCGTGTGCACCAAATAGGATGCTATGGGGACT
GTTTCAACTCCCCCTTCACTACTTTGCCGGCGAACCTTGAGTGTCTATGG
CTTGGTGACAAGTTCGATCATTCGCTTGAGGGCGTCAACTGGCCGAGTGG
GCTTGCCACCCTGGGACTTGGTGATAGGTTTGGGGGGTTGAATCGTGGTG
TATCGTGGCCCTCGAATCTTCGAAACCTGTACTTGGTGAGAGAGGTCGAT
TGGGCAGAGCGCCCCCCTTCCGGCTGCGAGGTTACGATCGCGAAGGATGA
CGACCCGGATGACATTTACTACGACGACTACAGTGACTTCCACGATGACG
CATTCGATGATCAAAACTACCGGGCGTACTACGAGGACTTCTATGGATTG
TGA
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