mRNA_E_fasciculatus_S2_contig7732.15897.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7732.15897.1
Unique NamemRNA_E_fasciculatus_S2_contig7732.15897.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7732.15897.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN3_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 2.400e-48
Identity = 98/111 (88.29%), Postives = 99/111 (89.19%), Query Frame = 1 
Query:    1 KTAGARNGGGTGKGSVGXXXXXXXXXXXXXXXXARKARKKIRRACDYCTQKKVRCDGTPPCRQCQRRQIECTFSPCARSGPSKVAPPNVANPIPGVGVSQNGALAATTLAA 333
            KTAGARNGGGT    VGX    XXXXXXXXX  ARKARKKIRRACDYCTQKKV+CDGTPPCRQCQRRQIECTFSPCARSGPSKV PPNVANPIPGVGVSQNGALAAT LAA
Sbjct:  119 KTAGARNGGGTXXXXVGXESDLXXXXXXXXXPEARKARKKIRRACDYCTQKKVKCDGTPPCRQCQRRQIECTFSPCARSGPSKVPPPNVANPIPGVGVSQNGALAATALAA 229
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BLAST of mRNA_E_fasciculatus_S2_contig7732.15897.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD81_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 7.150e-27
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:  157 VRCDGTPPCRQCQRRQIECTFSPCARSGPSKVAPPNVANPIPGVGVSQNGALAATTLA 330
            V+CDGTPPCRQCQRRQIECTFSPCARSGPSKV PPNVA+PIPGVGVSQNGALAAT LA
Sbjct:    8 VKCDGTPPCRQCQRRQIECTFSPCARSGPSKVPPPNVASPIPGVGVSQNGALAATALA 65
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BLAST of mRNA_E_fasciculatus_S2_contig7732.15897.1 vs.
Match: Uncharacterized (protein n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YCE6_9BASI)

HSP 1 Score: 56.2 bits (134), Expect = 7.170e-7
Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:  115 KKIRRACDYCTQKKVRCDGTPPCRQCQRRQIECTFSPCARSGPSK 249
            K++  AC +C  +K+RCDG  PCRQCQRR +EC + P  ++ PS+
Sbjct:  273 KRVSAACRFCKARKLRCDGCHPCRQCQRRSVECLYQPETQARPSR 317
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BLAST of mRNA_E_fasciculatus_S2_contig7732.15897.1 vs.
Match: Tpa: (zn 2cys6 transcription factor n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YU74_NANGC)

HSP 1 Score: 55.5 bits (132), Expect = 1.360e-6
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:  106 KARKKIRRACDYCTQKKVRCDGTPPCRQCQRRQIECTFSPCARSGP 243
            ++RKK+RR+CD CT KK+RCDG   C+ C RR   C +S   R+GP
Sbjct:    7 RSRKKLRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGP 52
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BLAST of mRNA_E_fasciculatus_S2_contig7732.15897.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA4_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.540e-6
Identity = 25/41 (60.98%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:  121 IRRACDYCTQKKVRCDGTPPCRQCQRRQIECTFSPCARSGP 243
            +R+ACD CT KKVRCDG   C QC R    C FS C RSGP
Sbjct:   78 LRKACDRCTSKKVRCDGKEGCFQCSRVGATCHFSICRRSGP 118
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BLAST of mRNA_E_fasciculatus_S2_contig7732.15897.1 vs.
Match: C6 (transcription factor n=3 Tax=Aspergillus kawachii TaxID=1069201 RepID=A0A146F8S2_ASPKA)

HSP 1 Score: 54.3 bits (129), Expect = 3.130e-6
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:  118 KIRRACDYCTQKKVRCDGTPPCRQCQRRQIECTFSPCARSGPSKVAPPNV 267
            KI RACD C +KKVRCDGT PCR C +R++ C ++     G     PP++
Sbjct:   43 KITRACDTCKRKKVRCDGTLPCRNCAKRKLHCFYNAKYNRGRPPTPPPSM 92
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7732.15897.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=8 Tax=Aspergillus TaxID=5052 RepID=A0A1L9N0K9_ASPTC)

HSP 1 Score: 54.3 bits (129), Expect = 3.480e-6
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:  118 KIRRACDYCTQKKVRCDGTPPCRQCQRRQIECTFSPCARSGPSKVAPPNV 267
            KI RACD C +KKVRCDGT PCR C +R++ C ++     G     PP++
Sbjct:   43 KITRACDTCKRKKVRCDGTLPCRNCAKRKLHCFYNAKYNRGRPPTPPPSM 92
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7732.15897.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4U1K5_PACTA)

HSP 1 Score: 54.3 bits (129), Expect = 3.560e-6
Identity = 21/41 (51.22%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:  100 ARKARKKIRRACDYCTQKKVRCDGTPPCRQCQRRQIECTFS 222
            A + R +I +ACDYC +KKV+C+G+ PCR C   Q+ECT++
Sbjct:   14 AHQRRSRISKACDYCRKKKVKCNGSSPCRSCTTSQVECTYT 54
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BLAST of mRNA_E_fasciculatus_S2_contig7732.15897.1 vs.
Match: uncharacterized (protein n=1 Tax=Eremomyces bilateralis CBS 781.70 TaxID=1392243 RepID=A0A6G1FSZ7_9PEZI)

HSP 1 Score: 53.9 bits (128), Expect = 4.740e-6
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:  118 KIRRACDYCTQKKVRCDGTPPCRQCQRRQIECTFS-PCARSGP-SKVAPPNVANPIPGVG--VSQNGALAATTLA 330
            ++R+ACD C ++KVRC  T PC  CQR  IECTF  P  R GP ++VA       + G G  V Q+GA + T +A
Sbjct:  108 RLRKACDACGERKVRCSDTLPCEPCQRLGIECTFDRPSKRRGPPNRVAERRKRTKLTGEGELVGQSGASSPTQMA 182
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7732.15897.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein (Fragment) n=6 Tax=Aspergillus TaxID=5052 RepID=G3YCN4_ASPNA)

HSP 1 Score: 53.5 bits (127), Expect = 6.450e-6
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:  118 KIRRACDYCTQKKVRCDGTPPCRQCQRRQIECTFSPCARSGPSKVAPPN 264
            KI RACD C +KK+RCDGT PCR C +R++ C ++     G     PP+
Sbjct:   43 KITRACDTCKRKKIRCDGTLPCRNCAKRKLHCFYNAKYNRGRPPTPPPS 91
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7732.15897.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Zn(2)-C62.400e-4888.29fungal-type domain-containing protein n=1 Tax=Ecto... [more]
Uncharacterized7.150e-2793.10protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.170e-748.89protein n=1 Tax=Acaromyces ingoldii TaxID=215250 R... [more]
Tpa:1.360e-652.17zn 2cys6 transcription factor n=3 Tax=Monodopsidac... [more]
Zn(2)-C61.540e-660.98fungal-type domain-containing protein n=1 Tax=Ecto... [more]
C63.130e-648.00transcription factor n=3 Tax=Aspergillus kawachii ... [more]
Zn(2)-C63.480e-648.00fungal-type domain-containing protein n=8 Tax=Aspe... [more]
Zn(2)-C63.560e-651.22fungal-type domain-containing protein n=1 Tax=Pach... [more]
uncharacterized4.740e-645.33protein n=1 Tax=Eremomyces bilateralis CBS 781.70 ... [more]
Zn(2)-C66.450e-646.94fungal-type domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7732contigE_fasciculatus_S2_contig7732:1718..3318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size336
Hectar predicted targeting categoryother localisation
Exons4
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842435.393477-CDS-E_fasciculatus_S2_contig7732:1719..18071696842435.393477-CDS-E_fasciculatus_S2_contig7732:1719..1807Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7732 1720..1807 -
1696842435.4057124-CDS-E_fasciculatus_S2_contig7732:2200..22891696842435.4057124-CDS-E_fasciculatus_S2_contig7732:2200..2289Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7732 2201..2289 -
1696842435.4169416-CDS-E_fasciculatus_S2_contig7732:2696..27611696842435.4169416-CDS-E_fasciculatus_S2_contig7732:2696..2761Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7732 2697..2761 -
1696842435.4265573-CDS-E_fasciculatus_S2_contig7732:3227..33181696842435.4265573-CDS-E_fasciculatus_S2_contig7732:3227..3318Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7732 3228..3318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7732.15897.1prot_E_fasciculatus_S2_contig7732.15897.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7732 1720..3318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7732.15897.1

>prot_E_fasciculatus_S2_contig7732.15897.1 ID=prot_E_fasciculatus_S2_contig7732.15897.1|Name=mRNA_E_fasciculatus_S2_contig7732.15897.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=111bp
KTAGARNGGGTGKGSVGGESDLDSDDDPNEDPEARKARKKIRRACDYCTQ
KKVRCDGTPPCRQCQRRQIECTFSPCARSGPSKVAPPNVANPIPGVGVSQ
NGALAATTLAA
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mRNA from alignment at E_fasciculatus_S2_contig7732:1718..3318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7732.15897.1 ID=mRNA_E_fasciculatus_S2_contig7732.15897.1|Name=mRNA_E_fasciculatus_S2_contig7732.15897.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1601bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7732:1718..3318- (Ectocarpus fasciculatus EfasUO2)
AAGACGGCGGGGGCTAGGAACGGGGGGGGCACGGGCAAGGGCTCGGTCGG
GGGGGAGTCCGACTTGGACAGCGACGATGACCCGAACGAAGGTGGGGATC
TACTCTCTCTCTCTCCCTCTCTCTGTCTCTTTCGTGTGAAGAATGGTAGT
TGATAGTTGCTTTATTTTTGGTCTGCGGAAATATACCCATGGGCTCCTTG
TTGGAGGTTTAGATTGTACCCGCGATACAGCAGTATGCACATCCCAGAGA
CTGCAACAGCAGCAACAGCGGCTTCAATTTACCTGTTGGAGAATGGTGTT
ATGAAACGCGATGGTAGATAGTGCTTGACCGCAAGAGGTGCTCAGGTAAG
GGCCTACTAGTAAAACATACCATGTCGTACATCTAACTTGTGGCTGCTGG
TTTATTCCTCATAAAAACACAAGAAACTGAGCCTGGTGCAACGTACTTGA
AAGAGGTTGTTTCGTGGTGACGCGTGTTTATATTCCGATATTGCGTGTGT
TCTTTCTGACTTGCTTCGTTCGATTTCTTGTCTTTTTTTTTTTGTCCTGC
GGGACAGATCCCGAGGCACGGAAAGCCCGCAAGAAGATCCGGCGAGCGTG
TGACTACTGCACTCAGAAGAAGGTGACGAGTTTTTGGTTCAAAACCGAGA
GGGGGTTCGGTACCGAAGCAACGCCCTCACGAAAAAAAGAACAGTCAGCA
ACGTGAGCTTTCGAATCTGTCGAAACATGAGCACTTGAAACCATACTACA
ACGTACCAGATGATAGCAGCTATTGATAGCTCACAGAGAAAGCATGTGCA
AAGGTAGGTATCATGTAACATAGGATGTTCTTGAGCGCGGGCACTTGCTT
CGCGGTAGGAACAAAGAGAGAGCAGAAACAAAGGTCAGAGGGAAACATGG
ATGCTGCTGCTGCATCTGCCGCTGTTACGCATGCAGTTGTTGCTGCAGGT
GTTCCTACTGCTGGTGCTGCTGCATCTGCTGCTGTCACTGATGCAGTTGT
TGTTGGTGCTGCTGTCCTTTTTGGTGCAGGTTAGATGCGACGGGACTCCG
CCCTGCCGTCAATGTCAGAGGAGACAGATTGAGTGCACTTTCAGCCCGTG
CGCCCGTTCCGGCCCAAGGTTAGCTCGGTTGGACATTGACACGTCATCAG
TGCTCTGTACCTCGCATGTGCTGCTCTGTGGGATAGAGTACGGGCCCGAG
AGGTTTCGAAGCACCAGACCTCGATGCTGTTTTGAAAGCGTCGGCAGTTT
TTCAGAGTACACCCGCTTGCCACGCCACAACCGCTGCTTCTCCATCATCC
CCTCTCCCCCCCGCGCCGCCCTCTCCCTGTCTCTGCTGAACCCTGCCTTC
TTGCCGGGTTGTTTTTCTCGAGCACCCCCAACCAAGCACACCGTTCTTCA
CCTCTTCCGTCAACGTCCGCGTCATTCCACGCAAATAACCGGCGGCGGAA
AACCCGTGTACCACAACCACCGTGGGAGTGACCCCCCCCCCTCTCTCGTG
ACGGTTTCCAGCAAGGTAGCCCCACCAAACGTGGCGAACCCGATACCTGG
GGTGGGCGTTTCGCAGAACGGGGCGCTGGCGGCGACGACTCTGGCGGCGG
C
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7732:1718..3318-

>mRNA_E_fasciculatus_S2_contig7732.15897.1 ID=mRNA_E_fasciculatus_S2_contig7732.15897.1|Name=mRNA_E_fasciculatus_S2_contig7732.15897.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=333bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7732:1718..3318- (Ectocarpus fasciculatus EfasUO2)
AAGACGGCGGGGGCTAGGAACGGGGGGGGCACGGGCAAGGGCTCGGTCGG
GGGGGAGTCCGACTTGGACAGCGACGATGACCCGAACGAAGATCCCGAGG
CACGGAAAGCCCGCAAGAAGATCCGGCGAGCGTGTGACTACTGCACTCAG
AAGAAGGTTAGATGCGACGGGACTCCGCCCTGCCGTCAATGTCAGAGGAG
ACAGATTGAGTGCACTTTCAGCCCGTGCGCCCGTTCCGGCCCAAGCAAGG
TAGCCCCACCAAACGTGGCGAACCCGATACCTGGGGTGGGCGTTTCGCAG
AACGGGGCGCTGGCGGCGACGACTCTGGCGGCG
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