mRNA_E_fasciculatus_S2_contig7700.15876.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7700.15876.1
Unique NamemRNA_E_fasciculatus_S2_contig7700.15876.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7700.15876.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7700contigE_fasciculatus_S2_contig7700:57..1037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size981
Hectar predicted targeting categorysignal peptide
Exons1
Cds size510
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842433.353737-UTR-E_fasciculatus_S2_contig7700:56..1991696842433.353737-UTR-E_fasciculatus_S2_contig7700:56..199Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7700 57..199 +
1696842433.3732154-UTR-E_fasciculatus_S2_contig7700:709..10371696842433.3732154-UTR-E_fasciculatus_S2_contig7700:709..1037Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7700 710..1037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842433.3639297-CDS-E_fasciculatus_S2_contig7700:199..7091696842433.3639297-CDS-E_fasciculatus_S2_contig7700:199..709Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7700 200..709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7700.15876.1prot_E_fasciculatus_S2_contig7700.15876.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7700 200..709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7700.15876.1

>prot_E_fasciculatus_S2_contig7700.15876.1 ID=prot_E_fasciculatus_S2_contig7700.15876.1|Name=mRNA_E_fasciculatus_S2_contig7700.15876.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=170bp
MKKRGTVLVLCVVIICAWYAGGRERVSRVWLWCRVVIFFVALVMHRSRGR
GGALSGAISGTRLSRSPNPGQILVEISCIVENPWEMAASDLGLARLDAHT
RYPEFAEIDANLNFLRLQLSCACVFICVFHKERAAPPIKQHLGVVVFRSV
YQVFVATEGTKESHYGLRH*
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mRNA from alignment at E_fasciculatus_S2_contig7700:57..1037+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7700.15876.1 ID=mRNA_E_fasciculatus_S2_contig7700.15876.1|Name=mRNA_E_fasciculatus_S2_contig7700.15876.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=981bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7700:57..1037+ (Ectocarpus fasciculatus EfasUO2)
CGGCGCTCGAGAACGGCTGTTGTCGTCGTCGTCGTCGTCGCGGTTGCCGG
CGCGTCGGCAGGGATACGGGGACCCTTGGGCGGACGAGGGTTCCGACTGA
CTAACGGTCGTTCGGAAGGTATCCGGAAAAGCGAGTCAGCATAATGAAGA
AAAGGGGGACTGTATTGGTGCTTTGTGTTGTGATTATTTGCGCTTGGTAT
GCGGGGGGGAGGGAACGCGTTAGTCGCGTGTGGCTATGGTGTCGTGTTGT
TATTTTTTTCGTTGCGCTTGTTATGCATCGGTCGCGGGGGCGCGGGGGCG
CGTTGTCGGGTGCGATCTCCGGGACGAGACTGTCGCGATCGCCGAATCCG
GGACAGATTTTGGTCGAGATCTCGTGTATAGTAGAAAACCCGTGGGAGAT
GGCAGCTTCCGATCTTGGCTTGGCGAGACTTGACGCGCACACGAGATACC
CGGAATTTGCTGAGATTGATGCAAACTTGAACTTTTTGAGACTCCAACTC
TCTTGTGCGTGCGTTTTTATTTGCGTTTTTCACAAGGAAAGAGCAGCACC
GCCGATCAAGCAGCATTTAGGTGTTGTTGTGTTTCGATCAGTTTACCAAG
TGTTTGTTGCAACAGAAGGAACGAAAGAATCTCACTACGGACTGCGGCAC
TGAAAGCTCGTCGCCAACAGCTCTGCCGCGTAGATACAACTGCGCCGACG
AAATCGTGCAGGGCGATGTGCCCAGCACCCTGTTGTTGGTGTTGTTCTTG
TGGATGTTGTCTTGGACAGCACTGAACCGGTTCCAGCTATTTTCGTCGGA
CGTCAGTCATCTGGGGAAGAAAGGGAAGAAACGTTACACCAAAGACGAGG
GACTACACAGTACAGCAGCACTAGTGCCTACACGAGACGGGACACAAAAG
GGACGGTTGTTTCACAGCCGCCTTTTTAGCAGAGCAGTGATTCGGAAAAA
AAAAAAAATAACTTGTACTAGGAGGTCGCGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7700:57..1037+

>mRNA_E_fasciculatus_S2_contig7700.15876.1 ID=mRNA_E_fasciculatus_S2_contig7700.15876.1|Name=mRNA_E_fasciculatus_S2_contig7700.15876.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=510bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7700:57..1037+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGAAAAGGGGGACTGTATTGGTGCTTTGTGTTGTGATTATTTGCGC
TTGGTATGCGGGGGGGAGGGAACGCGTTAGTCGCGTGTGGCTATGGTGTC
GTGTTGTTATTTTTTTCGTTGCGCTTGTTATGCATCGGTCGCGGGGGCGC
GGGGGCGCGTTGTCGGGTGCGATCTCCGGGACGAGACTGTCGCGATCGCC
GAATCCGGGACAGATTTTGGTCGAGATCTCGTGTATAGTAGAAAACCCGT
GGGAGATGGCAGCTTCCGATCTTGGCTTGGCGAGACTTGACGCGCACACG
AGATACCCGGAATTTGCTGAGATTGATGCAAACTTGAACTTTTTGAGACT
CCAACTCTCTTGTGCGTGCGTTTTTATTTGCGTTTTTCACAAGGAAAGAG
CAGCACCGCCGATCAAGCAGCATTTAGGTGTTGTTGTGTTTCGATCAGTT
TACCAAGTGTTTGTTGCAACAGAAGGAACGAAAGAATCTCACTACGGACT
GCGGCACTGA
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