mRNA_E_fasciculatus_S2_contig7669.15838.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 161 bits (408), Expect = 2.920e-43 Identity = 79/117 (67.52%), Postives = 94/117 (80.34%), Query Frame = 3
Query: 255 TPDEWGTAVANSDATKLAELVLAWSGSKPERALSVVRNCVSLMEKEVEFSTP-ACRLPSPPTTPGPSRNSCLKAISVALNESCDGKRWYTSTKELQLASLELCIACRSYRMLQLNVD 602
+PD+WG AVA DATKLAELVL WSGS+PE ALS++R CV L+E+E FS P + L SP T GP+R+SCLK ++VALNE+CDGK WYTSTKELQLASLELC+ACR Y+ L L VD
Sbjct: 66 SPDKWGLAVATGDATKLAELVLVWSGSRPEAALSLLRECVLLLEEEAAFSVPDSSPLQSPSCTLGPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVD 182
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 143 bits (361), Expect = 1.220e-37 Identity = 68/104 (65.38%), Postives = 86/104 (82.69%), Query Frame = 3
Query: 294 ATKLAELVLAWSGSKPERALSVVRNCVSLMEKEVEFSTPAC-RLPSPPTTPGPSRNSCLKAISVALNESCDGKRWYTSTKELQLASLELCIACRSYRMLQLNVD 602
AT+LA+LVL WSGS+PE ALS++++CVSL+EKE FS PA +P PT PGPSR+SCL A+ +ALNE+C+G+ WYTSTKELQLASLE C+ACR+Y+ L L VD
Sbjct: 56 ATRLAQLVLVWSGSEPEPALSILKDCVSLLEKEFAFSAPAFPAVPLLPTMPGPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVD 159
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI) HSP 1 Score: 136 bits (342), Expect = 1.250e-35 Identity = 71/112 (63.39%), Postives = 82/112 (73.21%), Query Frame = 3
Query: 270 GTAVANSDATKLAELVLAWSGSKPERALSVVRNCVSLMEKEVEFSTPACR-LPSPPTTPGPSRNSCLKAISVALNESCDGKRWYTSTKELQLASLELCIACRSYRMLQLNVD 602
G+AVA+ ATKLAELVL WS SKPERALS+ R CVSL+EKE S L T PGP R+SCL AI VAL+E+CDGK WYTSTKELQLASL C ACR+++ + L VD
Sbjct: 71 GSAVASGAATKLAELVLVWSVSKPERALSIARTCVSLLEKEDAHSASGSSPLXXXSTAPGPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVD 182
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH80_ECTSI) HSP 1 Score: 94.0 bits (232), Expect = 8.460e-22 Identity = 53/74 (71.62%), Postives = 60/74 (81.08%), Query Frame = 3
Query: 36 MEGDAGSGSSIAADEWGSAVASGDATKLAVLVLLWAASKPERALSILKDCVSVLEREVVVSVPASSPLQLPPTT 257
MEG AGS SS DEWG AVASGDATKLA LVLLW+ KPERALS+++DCVSVLE+EV +S P SSPL+ PTT
Sbjct: 1 MEGRAGS-SSARPDEWGPAVASGDATKLAELVLLWSGLKPERALSVIRDCVSVLEKEVALSTPGSSPLRATPTT 73
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA8_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 2.490e-16 Identity = 49/74 (66.22%), Postives = 55/74 (74.32%), Query Frame = 3
Query: 36 MEGDAGSGSSIAADEWGSAVASGDATKLAVLVLLWAASKPERALSILKDCVSVLEREVVVSVPASSPLQLPPTT 257
MEGDAGSGS+ D WGSAVASGDAT LA LVLLW P ALSIL+ CV+VLE+EV +S P SSPL P T+
Sbjct: 1 MEGDAGSGSA-RPDAWGSAVASGDATGLAELVLLWCGVLPHPALSILRRCVAVLEKEVALSAPTSSPLPSPQTS 73
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 1.280e-15 Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 3
Query: 444 GPSRNSCLKAISVALNESCDGKRWYTSTKELQLASLELCIACRSYRMLQLNVD 602
GP+R CL+A+ VALNE+CDGK WYTSTKELQLASL+ CIACR+ + + LNVD
Sbjct: 45 GPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVD 97
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 2.890e-15 Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 3
Query: 444 GPSRNSCLKAISVALNESCDGKRWYTSTKELQLASLELCIACRSYRMLQLNVD 602
GP+R+SCL AI VALNE+ DGK WYTSTKE QLASLE CIACR+++ L L VD
Sbjct: 6 GPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVD 58
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 6.030e-15 Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 3
Query: 438 TPGPSRNSCLKAISVALNESCDGKRWYTSTKELQLASLELCIACRSYRMLQLNVD 602
+PGP+ N+CL AI VAL E+ DGK WYTSTKELQLASLE C+ACR+Y+ L L VD
Sbjct: 28 SPGPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVD 82
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 4.640e-14 Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 3
Query: 444 GPSRNSCLKAISVALNESCDGKRWYTSTKELQLASLELCIACRSYRMLQLNVD 602
G + N CL ++ VALNE+CDG WYTSTKELQ ASLE CIACR+Y ++ L VD
Sbjct: 8 GLTHNPCLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVD 60
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 7.500e-13 Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 3
Query: 456 NSCLKAISVALNESCDGKRWYTSTKELQLASLELCIACRSYRMLQLNVD 602
+S K + +ALNE CDGKRWYTSTKELQLASLE C+ACR Y++L+L VD
Sbjct: 15 SSGSKDLILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVD 63 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7669.15838.1 >prot_E_fasciculatus_S2_contig7669.15838.1 ID=prot_E_fasciculatus_S2_contig7669.15838.1|Name=mRNA_E_fasciculatus_S2_contig7669.15838.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=189bp MEGDAGSGSSIAADEWGSAVASGDATKLAVLVLLWAASKPERALSILKDCback to top mRNA from alignment at E_fasciculatus_S2_contig7669:1533..7321- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7669.15838.1 ID=mRNA_E_fasciculatus_S2_contig7669.15838.1|Name=mRNA_E_fasciculatus_S2_contig7669.15838.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5789bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7669:1533..7321- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7669:1533..7321- >mRNA_E_fasciculatus_S2_contig7669.15838.1 ID=mRNA_E_fasciculatus_S2_contig7669.15838.1|Name=mRNA_E_fasciculatus_S2_contig7669.15838.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=567bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7669:1533..7321- (Ectocarpus fasciculatus EfasUO2)back to top |