mRNA_E_fasciculatus_S2_contig7650.15817.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7650.15817.1
Unique NamemRNA_E_fasciculatus_S2_contig7650.15817.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7650.15817.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI9_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.000e-10
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   22 YADILEELDPLPELPESADERFFSKEALEFQYSTGPA 132
            +    EELDPLPELPESADERFF+KEALEFQY TGPA
Sbjct:    2 FGPPTEELDPLPELPESADERFFTKEALEFQYPTGPA 38
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7650.15817.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.000e-1081.08protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7650contigE_fasciculatus_S2_contig7650:4168..6512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_001130.1
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842427.2643194-CDS-E_fasciculatus_S2_contig7650:4167..42061696842427.2643194-CDS-E_fasciculatus_S2_contig7650:4167..4206Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7650 4168..4206 +
1696842427.287341-CDS-E_fasciculatus_S2_contig7650:6419..65121696842427.287341-CDS-E_fasciculatus_S2_contig7650:6419..6512Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7650 6420..6512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7650.15817.1prot_E_fasciculatus_S2_contig7650.15817.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7650 4168..6512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7650.15817.1

>prot_E_fasciculatus_S2_contig7650.15817.1 ID=prot_E_fasciculatus_S2_contig7650.15817.1|Name=mRNA_E_fasciculatus_S2_contig7650.15817.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=44bp
MEDNRDNYADILEELDPLPELPESADERFFSKEALEFQYSTGPA
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mRNA from alignment at E_fasciculatus_S2_contig7650:4168..6512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7650.15817.1 ID=mRNA_E_fasciculatus_S2_contig7650.15817.1|Name=mRNA_E_fasciculatus_S2_contig7650.15817.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2345bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7650:4168..6512+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGGATAACCGGGATAATTACGCTGATATTTTGGAGGTGAGAGAGAG
CGAGAGAGAAAAGAGCAGCGGAGCTGTTTCTCGCAACGAGTCCGTGCTGT
GCCTTCTTGGCGAGCTGCCTTCATGCCCAAGGAGAGCGCTGGCGGTCGCA
GAAAAGCCCGGTCATCTTGATCTCTCCCTTGTTGTTGCACGTTCTTGAGG
TAGCAGATACCGGTCGTTCGTTTCTTTGCCTCCCGCCAAGTTCGTGTGTG
TGTGGGTGCTCGAGGAGAGACTGGCGAACCCGCAAATTTTTCAAGTTGGT
TTGTGAACGCTGCGATGAGCTCTAGAAGACGGTGATGGTCTGATCCTTCC
ATGGCGTGGTCGACTGCAGAGTAGAGAGGTGGGAAACCGCGAGCTTTGCT
GGTCTCTGGTTTGGCGTCAAGCACGGCAGAGCGCACCACCCGCCACCTAA
AGCCTCGCCTTTTTTGGTTTGTGCAGGTGCAACGAACGAACGTATGTATG
CCGACGAATTTGTTCAAGCTGAAAAGTCTTCGAAAGGGCAACAAGCCCGG
TAGCGTGCGCTGAACCAACCGCTCATGTTACGCCCAAAAACGACCACAGG
CAACACAGCAGCAGCGCAAGCGAGCGGCCGCACGGCTGTGGCACGCAAAG
ATTGCCTCGGCCTACGAGCTGTTGGTAGCTGTAGCAGTTGGTACACGGCA
AAGCGCACGGCTCTTGCCATCCCCATGCCCCATGCTCTTTCCGTTGGGGC
TGGCTCCACACCACGATCATCAGCAGCAGATTGTTTGCTGCTGTGCATGA
TGCGGAAGTGCACCCGCTGCGATCGATCGCCGCTGCTGCGACTGCTGCTG
CCGTCGGTTGCTGTCCAGCAGACGTTCAGGGCCCCTATCGGCCGCGGTGA
ACACAAACACAGGGCTAGTTTTGTACTAGGCAGCGGAAACAGATACTTTT
AGCTGCTGCTGCTGCTGCTGCTGCCGTCTTGTGTGTGCGGGTGCCCGAGA
AATATGAACAGAGAGAGAGAGCAGTTACAAAAAAAAAGTGTCCGCACTTG
TACATGTTATGTGTGTCAAGTGCTCACAGCCAGTGGTGTGCATGCGGGCA
CGGCGGTAGTTCGCGTTTGCGACAACAGCAGTAGCAGTAAAGCCTGCTGC
GGAGGTTTATCTACACACAGCAGTAGTCTAGTACTTTGCAGACAACCCTC
GCTGCGAGACTCTCGTGCCTACCTGCAACAGCAGTAGGTACAAAAGAGAA
CGGGTAGTCTTTCGGTGTTTGTACTTGTATTTTTCTTCAAAAAAAGAGCA
ACCTACCACATGTAAGCATACTTGCTTCGAAAAAGTACGGTTCATGATTT
GAGTTTGAGGGTTCTCGACCCTCCCTCCTCCCCTGATCGCATGTAGGTAT
TCTACAGCAGTAGCCGGCCACACCGTTGGCATCCCGGCTCATGGTATCGT
TGCGTATTGCCTTTGTATTGAGCGTTGTTATGTTATGTATTCCAGGTTTT
CAGAGCCCTGCTGAGTAGTCATATCAACGCCTGTAGACCTGTAGATACGT
GAGCTGCGTTGCTTCTCGAGCGCGGGCGGCGTGATGTTGAATGCGGCGGA
AGGCGTAACGGCCGTCACGCGTGAGACGTGTGCGAGCTCGCTATTACTAC
GGATTTGTGTTGGTGGAAGGCCTACCCCACTACAGCCAGCGCCTGCTGGG
TGGGTATTTATTTTGTCGCCTTCATGTATTGGGCGACAGCAGTCTATCCC
GCCGTTCAGTGTTTTTGTTCTTGTATCTGTGATAGACCCAGCACATGTGA
ATGTTTTATCTATGATAGACCCAGCACATGTGAATGTTTTGGATCATACA
CATGTTTGACCCACCAACAGAGGGGTTACACATGATATTTTTTCTCCCTA
TCTCCTCCTGCGGTGCGTCCTCCTGCTGTGCGTCCACCTGCGGTGCGTCC
TCCTGCGGGGCTTTCCTGCATTTTCTTCCGCAAGAACGATTTTTTGCTGG
CATGCTCACGGCTGTTAGCCCTTTATTTTTTCGAAACAATGGAGTGTCCC
ACTAATTTGGGAATACATTGCGGATTAGCCGATAGACTACAAACTATTCA
CCACTGCGAACTTAGCATATATTCCAAACAATGAGAGTCTTGCTTGCTTG
CGCTTTCCCCACCACATGGTTTTACCAGTCCCGTTCTACCGCCGTTCTAA
CGCACAGAGTCCCCCATCTTTCTTTTTCCCGCGTTCATTCTATGCATACC
AGGAGCTGGACCCTCTACCGGAGCTACCTGAGAGCGCCGACGAGCGATTC
TTCAGCAAGGAAGCACTGGAGTTCCAGTACTCCACGGGTCCGGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7650:4168..6512+

>mRNA_E_fasciculatus_S2_contig7650.15817.1 ID=mRNA_E_fasciculatus_S2_contig7650.15817.1|Name=mRNA_E_fasciculatus_S2_contig7650.15817.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=132bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7650:4168..6512+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGGATAACCGGGATAATTACGCTGATATTTTGGAGGAGCTGGACCC
TCTACCGGAGCTACCTGAGAGCGCCGACGAGCGATTCTTCAGCAAGGAAG
CACTGGAGTTCCAGTACTCCACGGGTCCGGCG
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