mRNA_E_fasciculatus_S2_contig7638.15801.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7638.15801.1
Unique NamemRNA_E_fasciculatus_S2_contig7638.15801.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7638.15801.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7638contigE_fasciculatus_S2_contig7638:6400..7084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size686
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842425.517485-UTR-E_fasciculatus_S2_contig7638:6399..66881696842425.517485-UTR-E_fasciculatus_S2_contig7638:6399..6688Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7638 6400..6688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842425.528392-CDS-E_fasciculatus_S2_contig7638:6688..70841696842425.528392-CDS-E_fasciculatus_S2_contig7638:6688..7084Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7638 6689..7084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7638.15801.1prot_E_fasciculatus_S2_contig7638.15801.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7638 6689..7084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7638.15801.1

>prot_E_fasciculatus_S2_contig7638.15801.1 ID=prot_E_fasciculatus_S2_contig7638.15801.1|Name=mRNA_E_fasciculatus_S2_contig7638.15801.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=132bp
MVNQEKAVLFIITPPPTDPLPGPSRSWIKRPMHLGKNTKSESPVRKSVTI
QRASTWSMENQPSQCLEGRAILPLPNNTGRPALHHPPLSPLATTTSEQIL
KQVVHGLIPRCPPPASGPSSPNPPRRGRRRRR
back to top

mRNA from alignment at E_fasciculatus_S2_contig7638:6400..7084+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7638.15801.1 ID=mRNA_E_fasciculatus_S2_contig7638.15801.1|Name=mRNA_E_fasciculatus_S2_contig7638.15801.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=685bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7638:6400..7084+ (Ectocarpus fasciculatus EfasUO2)
GGGTGGATAGAAGGGATATATATGGACAAAAGGAACTCGACGACGGTTGA
TTTGAGGAAACGAAAAAGAGGTACAAAACGCGTTACTCGTCAGCGTTGGA
AACGCAGTAGCTCCGTCACGCGGGACTCAGAAAACGAGAGATTGCATCAC
ATCATTCTCCCTCCGTTCCGAACAAAAATGGTCACAACGAGTCTAGGTTC
GTGACAAAAATTGTTGAAAGCAAGCCGACGAATGTCGTCGGAAACGCGTG
TTAGGTTCGTTACAAAAACAGAGCAGAGCTACACAAGCAATGGTAAATCA
AGAAAAAGCGGTACTGTTCATTATTACTCCCCCTCCGACCGACCCCTTGC
CGGGCCCTTCACGCTCATGGATAAAACGCCCCATGCACCTAGGCAAAAAC
ACGAAATCCGAGTCTCCGGTTCGGAAGAGCGTCACAATCCAACGAGCTTC
CACTTGGTCGATGGAAAACCAGCCCTCACAGTGTTTGGAAGGAAGGGCTA
TACTACCGTTGCCAAACAATACAGGTAGGCCAGCCCTACACCACCCACCC
CTCTCCCCTCTCGCAACAACAACTTCAGAACAGATCCTCAAGCAGGTTGT
TCACGGTCTGATTCCCCGGTGCCCCCCCCCCGCCAGCGGCCCTTCCTCCC
CCAACCCCCCCCGGCGGGGGAGACGACGCCGACGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7638:6400..7084+

>mRNA_E_fasciculatus_S2_contig7638.15801.1 ID=mRNA_E_fasciculatus_S2_contig7638.15801.1|Name=mRNA_E_fasciculatus_S2_contig7638.15801.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=396bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7638:6400..7084+ (Ectocarpus fasciculatus EfasUO2)
ATGGTAAATCAAGAAAAAGCGGTACTGTTCATTATTACTCCCCCTCCGAC
CGACCCCTTGCCGGGCCCTTCACGCTCATGGATAAAACGCCCCATGCACC
TAGGCAAAAACACGAAATCCGAGTCTCCGGTTCGGAAGAGCGTCACAATC
CAACGAGCTTCCACTTGGTCGATGGAAAACCAGCCCTCACAGTGTTTGGA
AGGAAGGGCTATACTACCGTTGCCAAACAATACAGGTAGGCCAGCCCTAC
ACCACCCACCCCTCTCCCCTCTCGCAACAACAACTTCAGAACAGATCCTC
AAGCAGGTTGTTCACGGTCTGATTCCCCGGTGCCCCCCCCCCGCCAGCGG
CCCTTCCTCCCCCAACCCCCCCCGGCGGGGGAGACGACGCCGACGA
back to top