mRNA_E_fasciculatus_S2_contig7634.15797.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7634.15797.1 vs.
Match: Vps8 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE) HSP 1 Score: 871 bits (2251), Expect = 1.770e-286 Identity = 589/867 (67.94%), Postives = 607/867 (70.01%), Query Frame = 1
Query: 4 QVLREAMSIAERDRLRAPHPXXXXXXXXXXXXXXXXXXXLHPYPADPTFDELGYKVLLYLKRCFRGRVLGAAEPLSAEDTAKARASLLHLLVRPALIQSSSSSIRAAGATAAADA--GRRREGGSNKPWGGDRRWQEAFFPYLAVLLYVDAGATIDVLSVAMDSPDATFRREIPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGPAGEXXXXXXXXXXXVWGRRLGRRGRAARAVGWVAGAPVVAAGGGRAEARTKV-DGEEVDGVWGGAAVAAVDAENLCPSRRSVVEAVTSVLAPHLSDQAEQLEAASSISGSGGPSSEGPDSKNVGGLSAAAFVHGAQPEKATSVAAKKEXXXEGYGDDSLAAQAEATESSLLRDRDGQEWWAAARPHLFGFVAKYLELSLVSVGPRLTNAVLVSVATGXXXXXXXXXXXXXXHEGPDPAVDAQARLVTLLERVPLSLVDRERLLPLAEKSGFFRAAVILLKAAVTLGEQRGFTLEQFARIVRCYLQDSEDAFRSQVFGFIRQEIARAATAVPPSSGNAAIKPQANXXXXXXXXXXEG-------ELLSEKRDVVLKKLPQLMELDKAEAVFTVGEAFGGDHKAALAALSTTTTLQFDYLDALLRPPTXXXXXXXXXXXXXXXXXXPDIGXXXXXXXXXXXXXXXXXXXXXXXGVGVGVGGVRGPGSRPSSGLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSSTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTL-----------------------------------------------SARLASLRTALQTASLRELAAEMALLS 2433
+VLREAMSIAERDRLRAP+P LHPYPADPTFDELGYKVLLYLKRCFRGRVLGAAEPLSA DTAKARASLLHLLVRPAL+QSSSSS+ A+G AAADA G RR GGS+KPWGGDRRWQEA FP+LAVLLYVDAGATIDVLSVAMDSPDATFRRE+PAA XXXXXXXXXXXXXXXXXXXXXXXXX LGRRGRAARAVGW GAPV A G E RTKV +GEEVDGVWGG A AAV+AENLCPSRRSVVEAVTSVLAPHLSDQAEQLEAAS XXX GYGDD L A+A A +SSLLRDRDGQEWWAAARPHLFGFVAKYLELSLVSVGPRLTNAVLVSVATGXXXXXXXX HEGPDPAVDAQARLVTLLERVPLSLVDR+RLLPLAEKSGFFRAAVILLKAAVTLGEQRGFTLEQFARIVRCYLQDSEDAFRSQVFGFIRQEIA AATA PSSGNA+ KP+ G ELLSEKRDVVL+KLPQLMELDKAEAVFTVGEAFGGDHKAALAALS TTTLQFDYLDALLRPP+ PDI V VGGVRGPGSRPSSGLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSSTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTL SARLASLRTALQ ASLRELAAEMAL+S
Sbjct: 1180 EVLREAMSIAERDRLRAPNPPPCGDGGQGGEGYRQQQL-LHPYPADPTFDELGYKVLLYLKRCFRGRVLGAAEPLSAVDTAKARASLLHLLVRPALMQSSSSSLGASG-VAAADAATGGRRMGGSSKPWGGDRRWQEAPFPHLAVLLYVDAGATIDVLSVAMDSPDATFRREVPAAAXXXXXXXXXXXXXXXXXXXXXXXXXVPPTLHREFSSSSSS-------------------------------LGRRGRAARAVGWATGAPVSAGG---PETRTKVVEGEEVDGVWGGTA-AAVEAENLCPSRRSVVEAVTSVLAPHLSDQAEQLEAASXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYGDDGLTAEAAAQQSSLLRDRDGQEWWAAARPHLFGFVAKYLELSLVSVGPRLTNAVLVSVATGXXXXXXXX------HEGPDPAVDAQARLVTLLERVPLSLVDRDRLLPLAEKSGFFRAAVILLKAAVTLGEQRGFTLEQFARIVRCYLQDSEDAFRSQVFGFIRQEIAHAATAAAPSSGNASSKPRQAKHGDRSPPGTHGGGEEGNKELLSEKRDVVLEKLPQLMELDKAEAVFTVGEAFGGDHKAALAALSATTTLQFDYLDALLRPPSEQQQGVSSSPSPPGSGG-PDIARGRSGWGGGQQGVRHHHRDDR-----VDVGGVRGPGSRPSSGLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSSTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLQNLGRAAGRGGGGXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSARLASLRTALQKASLRELAAEMALVS 1992
BLAST of mRNA_E_fasciculatus_S2_contig7634.15797.1 vs.
Match: Vps8 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI) HSP 1 Score: 750 bits (1937), Expect = 8.690e-248 Identity = 587/792 (74.12%), Postives = 601/792 (75.88%), Query Frame = 1
Query: 4 QVLREAMSIAERDRLRAPHPXXXXXXXXXXXXXXXXXXX---LHPYPADPTFDELGYKVLLYLKRCFRGRVLGAAEPLSAEDTAKARASLLHLLVRPALIQSSSSSIRAAGATAAADAGRRREGGSNKPWGGDRRWQEAFFPYLAVLLYVDAGATIDVLSVAMDSPDATFRREIPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGPAG-----EXXXXXXXXXXXVWGRRLGRRGRAARAVGWV--AGAPVVAAGGGRAEARTKV-DGEEVDGVWGGAAVAAVDAENLCPSRRSVVEAVTSVLAPHLSDQAEQLEAASSISGSGGPSSEGPDSKNVGGLSAAAFVHGAQPEKATSVAAKKEXXXEGYGDDSLAAQAEATESSLLRDRDGQEWWAAARPHLFGFVAKYLELSLVSVGPRLTNAVLVSVATGXXXXXXXXXXXXXXHEGPDPAVDAQARLVTLLERVPLSLVDRERLLPLAEKSGFFRAAVILLKAAVTLGEQRGFTLEQFARIVRCYLQDSEDAFRSQVFGFIRQEIARAATAVPPSSGNAAIKPQ-------ANXXXXXXXXXXEGELLSEKRDVVLKKLPQLMELDKAEAVFTVGEAFGGDHKAALAALSTTTTLQFDYLDALLRPPTXXXXXXXXXXXXXXXXXXPDIGXXXXXXXXXXXXXXXXXXXXXXXGVGVGVGGVRGPGSRPSSGLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSSTGYSLDDTLALCQERGVADATAYLLERKGDVPG 2325
+VLREAMSIAERDRLRAP P XXXXXXXXXXXXXXXXXX LHPYPADPTFDELGYKVLLYLKRCFRGRVLGA+EPLSA DTAKARASLLHLLVRPAL+QSSSSS+ AAG AAADAG RR GGS +PWGGDRRWQEA FPYLAVLLYVDAGATIDVLSVAMDSPDATF RE+PAA XXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXX GGPAG XXXXXX XXX R GR G A A +V AGG EARTKV +GEEVDGVWGG A AAV+AENLCPSRRSVVEAVTSVLAPHLSDQAEQLEAASS XXX LLRDRDGQEWWAAARPHLFGFVAKYLELSLVSVGPRLTNAVLVSVATGXXXXXXXX HEGPDPAVDAQARLVTLLERVPLSLVDRERLLPLAEKSGFFRAAVILLKAAVTLGEQRGF LEQFARIVRCYLQDSEDAFRSQVFGFIRQEIARAATA PSSGN + KP+ + E ELLSEKRDVVL+KLPQLMELDKAEAVFTVGEAFGGDHKAALAALS TTTLQFDYLDALLRPPT XXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXX VGVGGVRGPGSRPSSGLAAGLDDGDRSLHVRLLVR+ P DDTLALCQERGVA AT YLLERKG PG
Sbjct: 966 EVLREAMSIAERDRLRAPRPPXXXXXXXXXXXXXXXXXXXLLLHPYPADPTFDELGYKVLLYLKRCFRGRVLGASEPLSAADTAKARASLLHLLVRPALMQSSSSSLGAAG-VAAADAGGRRAGGSKRPWGGDRRWQEALFPYLAVLLYVDAGATIDVLSVAMDSPDATFHREVPAAAXXXXXXXXXXXXXXXXXXXXXXXAVPPTLHRELSSXXXXXXXXXDRERGGGPAGGEAXXXXXXXXXGEXXXXXXXRGGRWGGGANXXXXXXXAALDIVLAGG--TEARTKVVEGEEVDGVWGGTA-AAVEAENLCPSRRSVVEAVTSVLAPHLSDQAEQLEAASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXLLRDRDGQEWWAAARPHLFGFVAKYLELSLVSVGPRLTNAVLVSVATGXXXXXXXX------HEGPDPAVDAQARLVTLLERVPLSLVDRERLLPLAEKSGFFRAAVILLKAAVTLGEQRGFNLEQFARIVRCYLQDSEDAFRSQVFGFIRQEIARAATAAAPSSGNTSSKPRQAKHGDGSPPGTHGGGGEGEAELLSEKRDVVLEKLPQLMELDKAEAVFTVGEAFGGDHKAALAALSATTTLQFDYLDALLRPPTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDDR-----VGVGGVRGPGSRPSSGLAAGLDDGDRSLHVRLLVRYSP---------------DDTLALCQERGVAHATPYLLERKGRRPG 1724
BLAST of mRNA_E_fasciculatus_S2_contig7634.15797.1 vs.
Match: Vps8 (domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CD47_THAPS) HSP 1 Score: 100 bits (250), Expect = 3.530e-18 Identity = 88/327 (26.91%), Postives = 142/327 (43.43%), Query Frame = 1
Query: 1414 LVTLLERVPLSLVDRERLLPLAEKSGFFRAAVILLKAAVTLGEQRGFTLEQFARIVRCYLQDSEDAFRSQVFGFIRQEIARAATAVPPSSGNAAIKPQANXXXXXXXXXXEGELLSEKRDVVLKKLPQLMELDKAEAVFTVGEAFGGDHKAALAALSTTTT--LQFDYLDALLRPPTXXXXXXXXXXXXXXXXXXPDIGXXXXXXXXXXXXXXXXXXXXXXXGVGVGVGGVRGPGSRPSSGLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSSTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLSARLASLRTALQ 2388
++ LL +P + + + +L EK+ RAA+ L KA F R + CYL+D +D F+ VF + R+E +++ N++ LL R+V+L++LP+L+ELD + VGE F D L++L + +++ +L A++ D+ + L A L + ++ L+ RF P VY +LS++ Y LDD L LCQ+R + DA+AYLLER GDV GAL L L+TL +R+ +L++ LQ
Sbjct: 353 VLALLHALPRTSYELDEVLYTIEKAQLVRAALFLHKAGY-----------YFNRAIDCYLKDRDDVFKKGVFEYARKECISSSSDYEDGGANSSA------------------LL---RNVLLRRLPELIELDAVQTAHLVGEIFVEDIDMILSSLRDIDSGRVEYGFLHAIIS----------------------DLSKVDAVA---------------------------------AQELGANLTINHQHAYLSLMARFEPDMVYQYLSTNHNYRLDDALKLCQDRRITDASAYLLERMGDVSGALQLMLQTLDSRMITLKSILQ 592
BLAST of mRNA_E_fasciculatus_S2_contig7634.15797.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PNM9_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 4.130e-11 Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 1
Query: 2122 SSGLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSSTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLSARLASLR 2376
S L A L ++ L+ F+P VY +LS++ Y L D L LCQ+R +ADA+AYLLER GDV GAL L L+TL RL +LR
Sbjct: 898 SQELLANLTSNHHHKYLTLMANFQPDRVYQYLSTNQSYRLKDALELCQKRKIADASAYLLERMGDVSGALQLMLQTLDTRLVTLR 982
BLAST of mRNA_E_fasciculatus_S2_contig7634.15797.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HPF7_KLENI) HSP 1 Score: 77.8 bits (190), Expect = 8.090e-11 Identity = 67/214 (31.31%), Postives = 87/214 (40.65%), Query Frame = 1
Query: 1744 EGELLSEKRDVVLKKLPQLMELDKAEAVFTVGEAFGGDHKAALAALSTTTTLQFDYLDALLRPPTXXXXXXXXXXXXXXXXXXPDIGXXXXXXXXXXXXXXXXXXXXXXXGVGVGVGGVRGPGSRPSSGLA--AGLDDGDR--SLHVRLLVRFRPYEVYPFLSSSTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLSARLASL 2373
EG R VL +LP L+ LD A V + D+ L AL + LQF YL ++ GV GPG+ L AG++ D L+V L+ RF P V PFL S Y L+ LALCQ GV DA+AYLLER GDV AL L L ++A++++L
Sbjct: 1539 EGVQADAVRSAVLARLPALVRLDANAAACIVADHLASDNDRVLKALGSFPDLQFAYLKGIVTAQAVTVAP-----------------------------------------------GVGGPGTSKLGDLLQRAGIEVTDEMAELYVGLMCRFEPGSVLPFLESHQAYRLEQCLALCQRFGVTDASAYLLERMGDVGAALNLVLSQVTAKMSAL 1705
BLAST of mRNA_E_fasciculatus_S2_contig7634.15797.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EVL7_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 2.480e-10 Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 2125 SGLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSSTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLSARLASLRTALQ 2388
+GL D + ++RLL F P +V+P+L++ Y +D L LC+E + DA AYLLER GDV GAL+L L +L ++ LR AL+
Sbjct: 138 NGLRMADDAAVQERYIRLLCEFNPLQVFPYLAAHQAYRVDSCLKLCKEYNITDAEAYLLERTGDVTGALSLILTSLEKKIGLLRPALR 225
BLAST of mRNA_E_fasciculatus_S2_contig7634.15797.1 vs.
Match: Vps8 (domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RHT5_THAOC) HSP 1 Score: 75.9 bits (185), Expect = 2.940e-10 Identity = 79/336 (23.51%), Postives = 128/336 (38.10%), Query Frame = 1
Query: 1402 AQARLVTLLERVPLSLVDRERLLPLAEKSGFFRAAVILLKAAVTLGEQRGFTLEQ----FARIVRCYLQDSEDAFRSQVFGFIRQEIARAATAVPPSSGNAAIKPQANXXXXXXXXXXEGELLSEKRDVVLKKLPQLMELDKAEAVFTVGEAFGGDHKAALAALS--TTTTLQFDYLDALLRPPTXXXXXXXXXXXXXXXXXXPDIGXXXXXXXXXXXXXXXXXXXXXXXGVGVGVGGVRGPGSRPSSGLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSS-STGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLSARLASLRTALQ 2388
++ ++TLL +P + + +L E+ RAA+ L + AV T + + V C+L D + FR VF FIR+ + G++ RDV+ K+L +L++LD +A V E D L L + +++F L A++ + L + L ++ LL++FRP +VY +L + Y LD+ L CQ+ +ADA+AYLLER GD+ G+L L L +L RL + + ALQ
Sbjct: 1004 SEDEILTLLHALPRGSFELDEILFTVERVEMMRAALFLHQEAVRANLSSEITARKAQHHLDKCVDCFLMDRDAQFRLGVFDFIRKTSST------------------------------GDVSGVLRDVIFKRLAELIDLDPNQAALLVAEVISYDIGTILYRLKGLKSGSIEFKLLQAVISSNSNDDSVLQ---------------------------------------------------------LKSNLTKEHHHSYLELLIKFRPDQVYQYLQTHQNNYRLDEALKQCQDCEIADASAYLLERLGDISGSLKLMLESLDERLRNFKLALQ 1252
BLAST of mRNA_E_fasciculatus_S2_contig7634.15797.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DMG7_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 5.230e-10 Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 2125 SGLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSSTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLSARLASLRTALQ 2388
+GL D + ++RLL F P +V+P+L++ Y +D L LC+E + DA AYLLER GDV GAL+L L +L ++ LR AL+
Sbjct: 215 NGLRMADDAAVQERYIRLLCEFNPLQVFPYLAAHQAYRVDSCLKLCKEYSITDAEAYLLERTGDVTGALSLILTSLEKKIGLLRPALR 302
BLAST of mRNA_E_fasciculatus_S2_contig7634.15797.1 vs.
Match: Putative (vacuolar assembly/sorting protein vps8 (Fragment) n=1 Tax=Amblyomma aureolatum TaxID=187763 RepID=A0A1E1XA93_9ACAR) HSP 1 Score: 74.3 bits (181), Expect = 8.360e-10 Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 1
Query: 2113 SRPSSGLAAGLDDGD------RSLHVRLLVRFRPYEVYPFLSSSTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLSARL 2364
SR +S LAA D + ++ L+ +F P V FLS+S GY +++TLA+C+ V DATAYLLE+ GDV GALA+ L+ LS RL
Sbjct: 963 SREASSLAATQGAADSLAVAVQERYIELMCQFEPNAVCTFLSTSEGYRIEETLAICRRHSVLDATAYLLEKAGDVQGALAIMLQCLSQRL 1052
BLAST of mRNA_E_fasciculatus_S2_contig7634.15797.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F871_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 9.800e-10 Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 2125 SGLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSSTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLSARLASLRTALQ 2388
+GL D + ++RLL F P +V+P+L++ Y +D L LC+E + DA AYLLER GDV GAL+L L +L ++ LR AL+
Sbjct: 196 NGLRMADDAAVQERYIRLLCEFNPLQVFPYLAAHQAYRVDSCLKLCKEYSITDAEAYLLERTGDVTGALSLILTSLEKKIGLLRPALR 283 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7634.15797.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7634.15797.1 >prot_E_fasciculatus_S2_contig7634.15797.1 ID=prot_E_fasciculatus_S2_contig7634.15797.1|Name=mRNA_E_fasciculatus_S2_contig7634.15797.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=814bp MSIAERDRLRAPHPPPSGGGGERGEGDRQQQQQLHPYPADPTFDELGYKVback to top mRNA from alignment at E_fasciculatus_S2_contig7634:102..7283- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7634.15797.1 ID=mRNA_E_fasciculatus_S2_contig7634.15797.1|Name=mRNA_E_fasciculatus_S2_contig7634.15797.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=7182bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7634:102..7283- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7634:102..7283- >mRNA_E_fasciculatus_S2_contig7634.15797.1 ID=mRNA_E_fasciculatus_S2_contig7634.15797.1|Name=mRNA_E_fasciculatus_S2_contig7634.15797.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2442bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7634:102..7283- (Ectocarpus fasciculatus EfasUO2)back to top |