mRNA_E_fasciculatus_S2_contig7615.15783.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7615.15783.1
Unique NamemRNA_E_fasciculatus_S2_contig7615.15783.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV36_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 2.270e-33
Identity = 73/105 (69.52%), Postives = 73/105 (69.52%), Query Frame = 1
Query:    1 MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARG--------------------------------SLADGVLKQARALDGLIDVLPGAELREDQQME 219
            MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARG                                SLADGVLKQARALDGLIDVLPGAELREDQQME
Sbjct:   21 MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVAPLQQQQPGQPDAAPLRRAVTTNAAWADTVQSLADGVLKQARALDGLIDVLPGAELREDQQME 125          
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 21 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2M6_GLOUD)

HSP 1 Score: 61.6 bits (148), Expect = 3.190e-10
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    4 EVDKDAVSAMQESVDQLALSMFDSLRLIPFS------EEVKGGARGSLADGVLKQARALDGLIDVLPGAELREDQQME 219
            E+  D VS +QESVD++ALSMF++LRL+P S      +E    A  SLA+ VL+  +  D LID LPG E  E +Q+E
Sbjct:   29 EIALDKVSMLQESVDKMALSMFNALRLLPASTGDEGSKEETAAAIRSLANDVLRMVKETDALIDDLPGLEKTESEQLE 106          
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 21 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEG9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 8.150e-9
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   16 DAVSAMQESVDQLALSMFDSLRLIPFSEEVKGG---ARGSLADGVLKQARALDGLIDVLPGAELREDQQME 219
            D VS +QESVD++ALSMF++LRL+P     +     A  SLAD VL+  +  D LID LPG +  E  Q+E
Sbjct:   26 DKVSLLQESVDKMALSMFNALRLLPVGSGDRAETATAIRSLADDVLRMVKETDALIDDLPGLDKTESDQLE 96          
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CF31_PYTOL)

HSP 1 Score: 57.8 bits (138), Expect = 4.980e-8
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   16 DAVSAMQESVDQLALSMFDSLRLIPFS------EEVKGGARGSLADGVLKQARALDGLIDVLPGAELREDQQME 219
            D V+A+Q+SVD++ALSMF++LRL+P +      +E    A  +LA  VLK  +  D LID LPG +  ED+Q+E
Sbjct:   34 DKVTALQDSVDKMALSMFNALRLLPATLGDDKGKEENVAAIKALAAEVLKTVKETDALIDDLPGLDKTEDEQLE 107          
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YLZ2_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.260e-8
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   16 DAVSAMQESVDQLALSMFDSLRLIPFS-------EEVKGGARGSLADGVLKQARALDGLIDVLPGAELREDQQME 219
            D VS +QESVD++ALSMF++LRL+P +       +E K  A  +LA+ VLK  +  D LID LPG +  E +QME
Sbjct:   34 DKVSLLQESVDKMALSMFNALRLLPVATGDDTKKQETKD-AITTLANDVLKMVQETDALIDDLPGLDKTEAEQME 107          
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 21 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BEM1_HYAAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.180e-7
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   16 DAVSAMQESVDQLALSMFDSLRLIPFS--EEVKGGARGSLADGVLKQARALDGLIDVLPGAELREDQQME 219
            D VS +QESVD++ALSMF++LRL+P +  ++ K     +LA+ VLK  +  D LID LPG +  E +QME
Sbjct:   37 DKVSLLQESVDKMALSMFNALRLLPATTGDDTKNQIV-TLANDVLKMVQETDVLIDDLPGLDKTEAEQME 105          
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 21 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DSH2_PHYNI)

HSP 1 Score: 56.6 bits (135), Expect = 1.240e-7
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   16 DAVSAMQESVDQLALSMFDSLRLIPFS-------EEVKGGARGSLADGVLKQARALDGLIDVLPGAELREDQQME 219
            D VS +QESVD++ALSMF++LRL+P +       +E K  A  +LA+ VLK  +  D LID LPG +  E +QME
Sbjct:   37 DKVSLLQESVDKMALSMFNALRLLPAATGDDAKNQETKD-AITTLANDVLKMVQETDALIDDLPGLDKTEAEQME 110          
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 21 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VDW3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.740e-6
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   16 DAVSAMQESVDQLALSMFDSLRLIPFS-------EEVKGGARGSLADGVLKQARALDGLIDVLPG 189
            D VS +QESVD++ALSMF++LRL+P +       +E K  A  +LA+ VLK  +  D LID LPG
Sbjct:   37 DKVSLLQESVDKMALSMFNALRLLPAATGDDTKKQETKD-AITTLANDVLKMVQETDALIDDLPG 100          
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 21 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GHF5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 4.050e-6
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   16 DAVSAMQESVDQLALSMFDSLRLIPF--------SEEVKGGARGSLADGVLKQARALDGLIDVLPGAELREDQQME 219
            D V+A+Q+SVD +ALSMF++LRL+P         S+E    A   LA  V+   +  D LID LPG E  E  Q+E
Sbjct:   33 DTVTALQDSVDNMALSMFNALRLLPTKGTQDDPASDETCANAIKQLAQDVIDAYKRTDCLIDQLPGLERTEIDQLE 108          
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 21 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG39_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.830e-6
Identity = 32/76 (42.11%), Postives = 42/76 (55.26%), Query Frame = 1
Query:   16 DAVSAMQESVDQLALSMFDSLRLIPF--------SEEVKGGARGSLADGVLKQARALDGLIDVLPGAELREDQQME 219
            D V+ +Q SVD +ALSMF++LRL+P         S+E    A   LA  VL   +  D LID LPG +  E  Q+E
Sbjct:   33 DTVTVLQNSVDNMALSMFNALRLLPAKGPQNDPASDETCSNAINLLAQDVLDAFKRTDRLIDQLPGLDRTEKDQLE 108          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
Mediator2.270e-3369.52of RNA polymerase II transcription subunit 21 n=2 ... [more]
Mediator3.190e-1047.44of RNA polymerase II transcription subunit 21 n=1 ... [more]
Mediator8.150e-947.89of RNA polymerase II transcription subunit 21 n=1 ... [more]
Uncharacterized4.980e-845.95protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Uncharacterized9.260e-848.00protein n=1 Tax=Phytophthora palmivora var. palmiv... [more]
Mediator1.180e-748.57of RNA polymerase II transcription subunit 21 n=1 ... [more]
Mediator1.240e-748.00of RNA polymerase II transcription subunit 21 n=1 ... [more]
Mediator1.740e-649.23of RNA polymerase II transcription subunit 21 n=1 ... [more]
Mediator4.050e-643.42of RNA polymerase II transcription subunit 21 n=1 ... [more]
Mediator4.830e-642.11of RNA polymerase II transcription subunit 21 n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7615contigE_fasciculatus_S2_contig7615:216..554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score63.2
Seed ortholog evalue6e-08
Seed eggNOG ortholog65071.PYU1_T011475
Model size219
KEGG koko:K15152
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Subunit 21 of Mediator complex
EggNOG OGs1MHPC@121069,2CFQG@1,2S3J7@2759
Ec32 ortholog descriptionMediator complex, subunit Med21
Ec32 orthologEc-12_005030.1
Cds size219
COG Functional cat.K
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842423.8118224-CDS-E_fasciculatus_S2_contig7615:215..3111696842423.8118224-CDS-E_fasciculatus_S2_contig7615:215..311Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7615 216..311 -
1696842423.8249922-CDS-E_fasciculatus_S2_contig7615:431..5541696842423.8249922-CDS-E_fasciculatus_S2_contig7615:431..554Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7615 432..554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7615.15783.1prot_E_fasciculatus_S2_contig7615.15783.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7615 216..554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7615.15783.1

>prot_E_fasciculatus_S2_contig7615.15783.1 ID=prot_E_fasciculatus_S2_contig7615.15783.1|Name=mRNA_E_fasciculatus_S2_contig7615.15783.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=73bp
MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGSLADGVLKQ
ARALDGLIDVLPGAELREDQQME
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mRNA from alignment at E_fasciculatus_S2_contig7615:216..554-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7615.15783.1 ID=mRNA_E_fasciculatus_S2_contig7615.15783.1|Name=mRNA_E_fasciculatus_S2_contig7615.15783.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=339bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7615:216..554- (Ectocarpus fasciculatus EfasUO2)
ATGGAAGTGGACAAGGATGCCGTTTCTGCCATGCAAGAGTCGGTGGACCA GCTAGCTCTCAGCATGTTCGATTCCCTTCGATTAATCCCATTTTCAGAGG AAGTCAAAGGGGGCGCGAGGGGGGTGGCTCCGTTGCAGCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCCGGGACAACGAGGTGCAGTGCCCCTGAG ACGGGCGGTTACCACCAACGCCGCGTGGACGAACACGGTGCAGTCCCTGG CAGACGGAGTGCTGAAGCAAGCGAGAGCCTTGGATGGCCTCATCGATGTG CTGCCGGGAGCAGAGCTGCGCGAAGACCAGCAGATGGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7615:216..554-

>mRNA_E_fasciculatus_S2_contig7615.15783.1 ID=mRNA_E_fasciculatus_S2_contig7615.15783.1|Name=mRNA_E_fasciculatus_S2_contig7615.15783.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=219bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7615:216..554- (Ectocarpus fasciculatus EfasUO2)
ATGGAAGTGGACAAGGATGCCGTTTCTGCCATGCAAGAGTCGGTGGACCA
GCTAGCTCTCAGCATGTTCGATTCCCTTCGATTAATCCCATTTTCAGAGG
AAGTCAAAGGGGGCGCGAGGGGGTCCCTGGCAGACGGAGTGCTGAAGCAA
GCGAGAGCCTTGGATGGCCTCATCGATGTGCTGCCGGGAGCAGAGCTGCG
CGAAGACCAGCAGATGGAG
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