mRNA_E_fasciculatus_S2_contig7615.15783.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV36_ECTSI) HSP 1 Score: 121 bits (303), Expect = 2.270e-33 Identity = 73/105 (69.52%), Postives = 73/105 (69.52%), Query Frame = 1
Query: 1 MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARG--------------------------------SLADGVLKQARALDGLIDVLPGAELREDQQME 219
MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARG SLADGVLKQARALDGLIDVLPGAELREDQQME
Sbjct: 21 MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVAPLQQQQPGQPDAAPLRRAVTTNAAWADTVQSLADGVLKQARALDGLIDVLPGAELREDQQME 125
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 21 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2M6_GLOUD) HSP 1 Score: 61.6 bits (148), Expect = 3.190e-10 Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 4 EVDKDAVSAMQESVDQLALSMFDSLRLIPFS------EEVKGGARGSLADGVLKQARALDGLIDVLPGAELREDQQME 219
E+ D VS +QESVD++ALSMF++LRL+P S +E A SLA+ VL+ + D LID LPG E E +Q+E
Sbjct: 29 EIALDKVSMLQESVDKMALSMFNALRLLPASTGDEGSKEETAAAIRSLANDVLRMVKETDALIDDLPGLEKTESEQLE 106
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 21 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEG9_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 8.150e-9 Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 1
Query: 16 DAVSAMQESVDQLALSMFDSLRLIPFSEEVKGG---ARGSLADGVLKQARALDGLIDVLPGAELREDQQME 219
D VS +QESVD++ALSMF++LRL+P + A SLAD VL+ + D LID LPG + E Q+E
Sbjct: 26 DKVSLLQESVDKMALSMFNALRLLPVGSGDRAETATAIRSLADDVLRMVKETDALIDDLPGLDKTESDQLE 96
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CF31_PYTOL) HSP 1 Score: 57.8 bits (138), Expect = 4.980e-8 Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 16 DAVSAMQESVDQLALSMFDSLRLIPFS------EEVKGGARGSLADGVLKQARALDGLIDVLPGAELREDQQME 219
D V+A+Q+SVD++ALSMF++LRL+P + +E A +LA VLK + D LID LPG + ED+Q+E
Sbjct: 34 DKVTALQDSVDKMALSMFNALRLLPATLGDDKGKEENVAAIKALAAEVLKTVKETDALIDDLPGLDKTEDEQLE 107
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YLZ2_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 9.260e-8 Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 16 DAVSAMQESVDQLALSMFDSLRLIPFS-------EEVKGGARGSLADGVLKQARALDGLIDVLPGAELREDQQME 219
D VS +QESVD++ALSMF++LRL+P + +E K A +LA+ VLK + D LID LPG + E +QME
Sbjct: 34 DKVSLLQESVDKMALSMFNALRLLPVATGDDTKKQETKD-AITTLANDVLKMVQETDALIDDLPGLDKTEAEQME 107
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 21 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BEM1_HYAAE) HSP 1 Score: 54.7 bits (130), Expect = 1.180e-7 Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 16 DAVSAMQESVDQLALSMFDSLRLIPFS--EEVKGGARGSLADGVLKQARALDGLIDVLPGAELREDQQME 219
D VS +QESVD++ALSMF++LRL+P + ++ K +LA+ VLK + D LID LPG + E +QME
Sbjct: 37 DKVSLLQESVDKMALSMFNALRLLPATTGDDTKNQIV-TLANDVLKMVQETDVLIDDLPGLDKTEAEQME 105
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 21 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DSH2_PHYNI) HSP 1 Score: 56.6 bits (135), Expect = 1.240e-7 Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 16 DAVSAMQESVDQLALSMFDSLRLIPFS-------EEVKGGARGSLADGVLKQARALDGLIDVLPGAELREDQQME 219
D VS +QESVD++ALSMF++LRL+P + +E K A +LA+ VLK + D LID LPG + E +QME
Sbjct: 37 DKVSLLQESVDKMALSMFNALRLLPAATGDDAKNQETKD-AITTLANDVLKMVQETDALIDDLPGLDKTEAEQME 110
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 21 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VDW3_9STRA) HSP 1 Score: 51.2 bits (121), Expect = 1.740e-6 Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 16 DAVSAMQESVDQLALSMFDSLRLIPFS-------EEVKGGARGSLADGVLKQARALDGLIDVLPG 189
D VS +QESVD++ALSMF++LRL+P + +E K A +LA+ VLK + D LID LPG
Sbjct: 37 DKVSLLQESVDKMALSMFNALRLLPAATGDDTKKQETKD-AITTLANDVLKMVQETDALIDDLPG 100
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 21 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GHF5_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 4.050e-6 Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1
Query: 16 DAVSAMQESVDQLALSMFDSLRLIPF--------SEEVKGGARGSLADGVLKQARALDGLIDVLPGAELREDQQME 219
D V+A+Q+SVD +ALSMF++LRL+P S+E A LA V+ + D LID LPG E E Q+E
Sbjct: 33 DTVTALQDSVDNMALSMFNALRLLPTKGTQDDPASDETCANAIKQLAQDVIDAYKRTDCLIDQLPGLERTEIDQLE 108
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 21 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG39_9STRA) HSP 1 Score: 50.8 bits (120), Expect = 4.830e-6 Identity = 32/76 (42.11%), Postives = 42/76 (55.26%), Query Frame = 1
Query: 16 DAVSAMQESVDQLALSMFDSLRLIPF--------SEEVKGGARGSLADGVLKQARALDGLIDVLPGAELREDQQME 219
D V+ +Q SVD +ALSMF++LRL+P S+E A LA VL + D LID LPG + E Q+E
Sbjct: 33 DTVTVLQNSVDNMALSMFNALRLLPAKGPQNDPASDETCSNAINLLAQDVLDAFKRTDRLIDQLPGLDRTEKDQLE 108 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7615.15783.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7615.15783.1 >prot_E_fasciculatus_S2_contig7615.15783.1 ID=prot_E_fasciculatus_S2_contig7615.15783.1|Name=mRNA_E_fasciculatus_S2_contig7615.15783.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=73bp MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGSLADGVLKQback to top mRNA from alignment at E_fasciculatus_S2_contig7615:216..554- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7615.15783.1 ID=mRNA_E_fasciculatus_S2_contig7615.15783.1|Name=mRNA_E_fasciculatus_S2_contig7615.15783.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=339bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7615:216..554- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7615:216..554- >mRNA_E_fasciculatus_S2_contig7615.15783.1 ID=mRNA_E_fasciculatus_S2_contig7615.15783.1|Name=mRNA_E_fasciculatus_S2_contig7615.15783.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=219bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7615:216..554- (Ectocarpus fasciculatus EfasUO2)back to top |