mRNA_E_fasciculatus_S2_contig759.15751.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig759.15751.1
Unique NamemRNA_E_fasciculatus_S2_contig759.15751.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig759.15751.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ3_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 4.870e-65
Identity = 109/119 (91.60%), Postives = 111/119 (93.28%), Query Frame = 1 
Query:    1 MSRLLNPIGAASAAMRTPARRRVVQKVLDRAGKAVCEREFMMLMNALPEDVEDTKVPAKMEALRTAQKSLQVATQKAAAFRGEDYVTYRMKQLSEVAATKKRRRRNGIGRGRFNLARVY 357
            MSR LNPIGAASAAMRTPARRRVVQKVLD A  AVCEREFMMLMNALPEDVEDTK PAKME LRTAQKSLQVATQKAAA RG+DYVT+RMKQLS VAATKKRRRRNGIGRGRFNLARVY
Sbjct:    1 MSRFLNPIGAASAAMRTPARRRVVQKVLDHASTAVCEREFMMLMNALPEDVEDTKAPAKMETLRTAQKSLQVATQKAAAHRGQDYVTFRMKQLSGVAATKKRRRRNGIGRGRFNLARVY 119
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig759.15751.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.870e-6591.60protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig759contigE_fasciculatus_S2_contig759:22329..24706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size360
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_003420.1
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842420.1105864-CDS-E_fasciculatus_S2_contig759:22328..223971696842420.1105864-CDS-E_fasciculatus_S2_contig759:22328..22397Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig759 22329..22397 +
1696842420.1213703-CDS-E_fasciculatus_S2_contig759:23449..236111696842420.1213703-CDS-E_fasciculatus_S2_contig759:23449..23611Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig759 23450..23611 +
1696842420.1332765-CDS-E_fasciculatus_S2_contig759:24577..247061696842420.1332765-CDS-E_fasciculatus_S2_contig759:24577..24706Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig759 24578..24706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig759.15751.1prot_E_fasciculatus_S2_contig759.15751.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig759 22329..24706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig759.15751.1

>prot_E_fasciculatus_S2_contig759.15751.1 ID=prot_E_fasciculatus_S2_contig759.15751.1|Name=mRNA_E_fasciculatus_S2_contig759.15751.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=120bp
MSRLLNPIGAASAAMRTPARRRVVQKVLDRAGKAVCEREFMMLMNALPED
VEDTKVPAKMEALRTAQKSLQVATQKAAAFRGEDYVTYRMKQLSEVAATK
KRRRRNGIGRGRFNLARVY*
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mRNA from alignment at E_fasciculatus_S2_contig759:22329..24706+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig759.15751.1 ID=mRNA_E_fasciculatus_S2_contig759.15751.1|Name=mRNA_E_fasciculatus_S2_contig759.15751.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2378bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig759:22329..24706+ (Ectocarpus fasciculatus EfasUO2)
ATGTCCAGATTACTCAATCCTATTGGGGCTGCTTCGGCTGCTATGAGGAC
GCCTGCCCGACGTAGAGTGGTGAGTGCCTTGATTCTGGAGGGTCTACTGG
CGCAGTAAAACCCATCGCCTTCTTGGCCTACAGCCGCAGTACAGCAGTAG
TATGGCAAACCAATGCGTGTGCTCCTTCATGGTGGATGTATCGACAGTAG
ACTATGCGAATAACCTAGCATCTGTTATTTCTCCAGCTATTTCGCGCTGC
TGCGCAACAGGTGACCGTTTTTGGGCAACCGGTATCAACATAAAACATTG
CCGTTAAGCTGTCTTGTACATTGTAGAAGTCCTGCAGTCCCGCTGCAAAG
GTGTGCACACCATGCACACCAGTTCCATACAACAGGTTTACGTTGCAATC
CTACCGCAGCGGTAGGCACAGCTCACAGCTCACAAAGGCACACTGAAAAT
CGTGCCAATAGCCAGCCATCAAGCTGCTACGCTCACACTACGTTCCCAAC
GGCTTGAGCAGCTATGTACTTCAGGGAATTGCACCTCGTAGAGCCGGTCC
GCCATATCATACAGGAGTAAGCAAATAGGTGTACTGCGCTGCTGTACTTC
GTAGTACACCTACGTGAGTACTTCTTTGGTAAGAGCGGCACGTAACACGT
TCCTTGCGGCCGTAACCCAGTGGCAAGGGTCCCTTACCAACCAGACTCAA
TCGTGCACGGCGTGTATAGATGTTGCAACTATTTTTGGCAGTGATATTTC
AGCAAATAAATGCCGGCGAATCATGCGAATATGGAGCCTGTACTCCTCGC
AGTCTCTGCCGTGTAGTCACGAGATGGCTTTTCACGAATTGGTTCCTTGT
GTGTCCAGTTTTTGCTCCTGGCCCGTGCCGCGTTGCTTCCAGCGGAACAA
AGGAACACTCCTATCCATGATTGACGCTTACACCATTCCACTCAGACACA
TATCTTGGTTAACGTCTACATAATGAATCGACACCAATTTTTCATCCAAG
CAGCCGTGCAATGCATCACGCCTCCTCCGCAGTCTACCACTCTGCGGGGG
TCTACCGGTACAGCAGTAGTTATTGCTTGACTTGGCTGACCACGGTATTG
GGTGCCCGCCCTGGTATACAGGTACAAAAAGTGCTTGACCGCGCCGGCAA
GGCGGTGTGTGAGAGGGAGTTCATGATGCTGATGAACGCCCTGCCGGAGG
ACGTGGAGGACACCAAGGTACCGGCCAAGATGGAGGCGTTGCGGACGGCG
CAGAAGTCCCTACAAGTGGCCACCCAGAAAGCGGTGAGTGCTCGCTTTAC
GTCTAGCGCCAGTACACCTGGCGCAAAGACCGTTGATGCTCTTTTTGAAA
ATTGTCAAATGCCAGTCCACCCAACTGCTGGTAAACGTGTTGCTGAGCGG
GGCACGAAGCGGCGACAAGGCGGGGAGGCCTTCGAAAGTACGTGATGCTG
AGGATCTAGTATGTGTCAGTTTTCCCCCGTGTGGGTTTCTCCATGGTTAT
GAGAAGACGGCTTTGGAGACACACCTACATGACCGTGGCCACATTGAGAG
CTGTGTTTCCGTAGCGAAAACGGGTTTTCGGGGCGGAAGCGGACGTGGAG
GGTTGCGAAACTAGTATCTCGATCCTTGTGTGCCAGATACATTTTTCTCG
TTTCGAGATCGTTCAACCAGAAGTGACTTGCACGAATCGATCGAATGGGT
ACTGTTGTAGTGGGAGGAATTTGTTTTGTAAGGCAGTCGTGAGAAAAGTG
AGGGTACTTGGATACCTGGCCACCATGCTCTGATCTTAGCGGCAAGGTGA
ATGTGCGAGACAACCATTTTATAGTTCCCGCAGTAGCCATCAATCGTAGC
GGTAAGTTATTGAGCCGACATCGACCTTGTGGCACTCGTTTATGCCGTTG
GCGGCCTTCGTTCTTGCTGTCGCAACCTGGATACTCCCGTTTCTACCACC
CGAACTCATCCTTGTGCTTTCTTCTTCTCGGTTGCCCCCCAACGGCATGG
ATGTTATTGACCCAAGCCTAGTGTTGCAGTTGGTGACGAGTTGTTGACGT
TCTCTCTGCTTCTGTCACGGTTTTGAGTCATTTGCGGCACACCGTCGTTT
TCGAAGGTTATCTCTCCGGCGGGAAACAACGCAAAAGTCGAACTTCGTTG
CTTCTTCGTTATTCCGTTTTTTGCTTCTTTCACGCATCCCGTTTCGTGAA
CTTACCACCCTGGTATAACAACCGCCATAAATTTCTGTTGTAAAACCAGG
CCGCATTTCGAGGGGAAGACTACGTGACGTATCGGATGAAGCAGCTCTCG
GAGGTGGCGGCGACGAAGAAGAGGCGCCGCCGAAACGGGATTGGTCGGGG
ACGATTCAACCTTGCCAGAGTTTATTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig759:22329..24706+

>mRNA_E_fasciculatus_S2_contig759.15751.1 ID=mRNA_E_fasciculatus_S2_contig759.15751.1|Name=mRNA_E_fasciculatus_S2_contig759.15751.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=360bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig759:22329..24706+ (Ectocarpus fasciculatus EfasUO2)
ATGTCCAGATTACTCAATCCTATTGGGGCTGCTTCGGCTGCTATGAGGAC
GCCTGCCCGACGTAGAGTGGTACAAAAAGTGCTTGACCGCGCCGGCAAGG
CGGTGTGTGAGAGGGAGTTCATGATGCTGATGAACGCCCTGCCGGAGGAC
GTGGAGGACACCAAGGTACCGGCCAAGATGGAGGCGTTGCGGACGGCGCA
GAAGTCCCTACAAGTGGCCACCCAGAAAGCGGCCGCATTTCGAGGGGAAG
ACTACGTGACGTATCGGATGAAGCAGCTCTCGGAGGTGGCGGCGACGAAG
AAGAGGCGCCGCCGAAACGGGATTGGTCGGGGACGATTCAACCTTGCCAG
AGTTTATTAG
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