mRNA_E_fasciculatus_S2_contig7571.15734.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7571.15734.1
Unique NamemRNA_E_fasciculatus_S2_contig7571.15734.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7571.15734.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K7_ECTSI)

HSP 1 Score: 624 bits (1609), Expect = 1.170e-218
Identity = 394/507 (77.71%), Postives = 404/507 (79.68%), Query Frame = 1 
Query:    1 DQTVVLRDIEYSELVRVEMRRPRKIGENPVLASVEFEVHDVIGLSLREGASVFQLECDRSRARYGIILLAFRFDPPVAADVLGPLDGAGLTSLPRGVTTPADQGHDEGEKAPAWGAPEAGQQAEREVEVAEPVYINVEGHFACLLLDDDTPLNRCK-PGLARQSSSSTASFAPSHSSAPKDHPDPTIEFDLAHACPGQPQPRARAGTLSSLIHPRLSTVSQNSVKSENSIYDYPGLIQHGRSSAVRMSMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKAGGKSGRPQSIDLRRVSSAGNDAMGLESAHLETPQQRWAMPRRRPRHSHDASGGGGYPDASGSAVGAADGAAVRGSKGGGKRARSRTGWAT-GFLKSPTLGGLRAGVGKAAKATRSKSTSSAVPMSNRGXXXXXGAKTPAGSVDSSCASTVRAGEEASAVGTPRFVPPALASSAVLCGMAPGLELSPTVLGATFVAAGLPSEE 1515
            DQ VVLRDIEYSELVRVEMRRPRKIGENPVLASVEFEVHDVIGLSLREGASVFQLECDRSRARYGIILLAFRFDPPVAADVLG LDG GL SLPRGVTTPADQGHDEGEKAPAWGAPEAGQQAEREVEVAEPVYINVEGHFACLLLDDDTPLNRCK PG                    KDHPD  IEFDLAH C GQP  R+RAGTLSSLIHPRLSTVSQNSVKSENS+YDY GLI HGR SAVRM+MN               XX      XXXXXXXXXXXXXXXXXXXXXXX      S+AGGKSGRPQSIDLR  SSAGNDAMGLESAHLETPQQRW MPRRR RHSHDASGGG  PD   SAV AADG  +RGSK GGKRARSR    T GFLKSPTLGGLRAGVGKAA+AT  KSTS AVP+SN G     G +TPA SVDSSCASTVRA EEASA  TP FVPPALASSAVLCG+   L LSPT L    VA+GLPSEE
Sbjct:   90 DQAVVLRDIEYSELVRVEMRRPRKIGENPVLASVEFEVHDVIGLSLREGASVFQLECDRSRARYGIILLAFRFDPPVAADVLGALDGVGLASLPRGVTTPADQGHDEGEKAPAWGAPEAGQQAEREVEVAEPVYINVEGHFACLLLDDDTPLNRCKSPGT-------------------KDHPDAAIEFDLAHGCAGQPLLRSRAGTLSSLIHPRLSTVSQNSVKSENSVYDYQGLI-HGRGSAVRMAMNNNSNASGVGGKPSRPXXVSLGGSXXXXXXXXXXXXXXXXXXXXXXX------SRAGGKSGRPQSIDLRIASSAGNDAMGLESAHLETPQQRWVMPRRRHRHSHDASGGG-NPDVGSSAVVAADGVGMRGSKAGGKRARSRAILKTPGFLKSPTLGGLRAGVGKAARAT--KSTSFAVPVSNAGGAGA-GTRTPADSVDSSCASTVRAAEEASAADTPLFVPPALASSAVLCGLPASLVLSPTAL---VVASGLPSEE 563
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7571.15734.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.170e-21877.71protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7571contigE_fasciculatus_S2_contig7571:3213..7196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1518
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-19_005030.1
Cds size1518
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842418.6071632-CDS-E_fasciculatus_S2_contig7571:3212..42621696842418.6071632-CDS-E_fasciculatus_S2_contig7571:3212..4262Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7571 3213..4262 -
1696842418.6171458-CDS-E_fasciculatus_S2_contig7571:5010..51991696842418.6171458-CDS-E_fasciculatus_S2_contig7571:5010..5199Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7571 5011..5199 -
1696842418.6255796-CDS-E_fasciculatus_S2_contig7571:6059..62271696842418.6255796-CDS-E_fasciculatus_S2_contig7571:6059..6227Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7571 6060..6227 -
1696842418.6359494-CDS-E_fasciculatus_S2_contig7571:7085..71961696842418.6359494-CDS-E_fasciculatus_S2_contig7571:7085..7196Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7571 7086..7196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7571.15734.1prot_E_fasciculatus_S2_contig7571.15734.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7571 3213..7196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7571.15734.1

>prot_E_fasciculatus_S2_contig7571.15734.1 ID=prot_E_fasciculatus_S2_contig7571.15734.1|Name=mRNA_E_fasciculatus_S2_contig7571.15734.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=506bp
DQTVVLRDIEYSELVRVEMRRPRKIGENPVLASVEFEVHDVIGLSLREGA
SVFQLECDRSRARYGIILLAFRFDPPVAADVLGPLDGAGLTSLPRGVTTP
ADQGHDEGEKAPAWGAPEAGQQAEREVEVAEPVYINVEGHFACLLLDDDT
PLNRCKPGLARQSSSSTASFAPSHSSAPKDHPDPTIEFDLAHACPGQPQP
RARAGTLSSLIHPRLSTVSQNSVKSENSIYDYPGLIQHGRSSAVRMSMNN
NSNASGGAGKPSRPRPVSLGGSLGLQLSALGLGVGGGGGGGGGGGGGGGG
GSKAGGKSGRPQSIDLRRVSSAGNDAMGLESAHLETPQQRWAMPRRRPRH
SHDASGGGGYPDASGSAVGAADGAAVRGSKGGGKRARSRTGWATGFLKSP
TLGGLRAGVGKAAKATRSKSTSSAVPMSNRGGGGGAGAKTPAGSVDSSCA
STVRAGEEASAVGTPRFVPPALASSAVLCGMAPGLELSPTVLGATFVAAG
LPSEE*
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mRNA from alignment at E_fasciculatus_S2_contig7571:3213..7196-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7571.15734.1 ID=mRNA_E_fasciculatus_S2_contig7571.15734.1|Name=mRNA_E_fasciculatus_S2_contig7571.15734.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3984bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7571:3213..7196- (Ectocarpus fasciculatus EfasUO2)
GACCAGACTGTGGTTTTGAGGGACATCGAATACTCGGAGTTGGTGCGGGT
GGAGATGCGTCGGCCGCGGAAGATAGGAGAGAATCCGGTGCTGGCGAGCG
TTGAGTTTGAGGTGAGAGCGCAAGAGGCCGGCGTCCGGAGAGGCGGCATT
TGCTACGGAAGTTGTGTACAGTATGGTCAAAAAGAGATCCTTGTTTACAA
TGTAGTGCCGGGGCCCGATAATAGTGCCGCTTGAAAGTGCCAGTGCCGGT
GTTTTCGGCGGGCAAACCCTGAATTGCCAAGTCATTCTCAACACTGTCAA
ATAGTGACGGTTCGGTACACAGCAGCGCCGGTGAATTTTCTGGGCATATT
CCGGCACCAAGCAGGGAAACCTCTACTGCTGTACCTTGCAGGTGTAACCG
TCATCGAATGGCAAGGTGATGTGTCCATAGGTCTGATGCAGCGGTAGTAT
TTTAGTGTTGCAGCACGTTTCGTCGCCATGGTATTCACAGCTTCTGATGA
TGATGAGGCAGCGGTAATATTGCAGGGCGGCGCGTTTCGAGAGCGAAGAC
GTTGCGCCCGATGTTGATATTCATGCTGCGGCTACATGTAGGCCTAGAGG
ACGCGGGGCGATTGGCCCCACGGGTTCGTTTTCTACCCGATACTGCTGTA
AACCTTTTGTTGCCCGCTTGTCGACGACAGAGCACTGATCCCGCCTAAAC
TGCTAACAATATATTTCGTGTATTTCTTTTGTAGCGTGCCTGGTGACCAA
CCCCGATCGGCTCCGGATACATATTGTAACATCCTGTGTGTTCGCATTTC
CCTCCTCCGATACATTGGAGTGGGGTATTTTGGCTTGCTTTATATTCACC
ACTACATGTCGTTGCGATCCTCTAATACACATTTGCTTTCCACGTTCAGA
TCACAAAACTCAACTCCAAGCGTTACGGCTCCGTTTTTTTGTCGTTGTTG
TCGGGTGTGGTGTGGGCAGGTTCACGACGTGATCGGCCTGAGCCTCCGGG
AGGGTGCGTCTGTCTTCCAGCTCGAGTGCGACCGATCACGCGCGCGCTAC
GGGATAATCCTGCTAGCGTTTCGCTTCGACCCGCCGGTGGCGGCCGACGT
GCTCGGACCTTTAGACGGGGCGGGGTTGACGAGCTTGGTGAGTGTGCGGG
GTTAGTTGGCGATGTACGGTGGTCGGTACAGAAGCCTTCGCAGGTGTTTT
GTCTAGTACCAAGTAAACAGGTTTGATTGAATTAAAGCATGCAATCGGGG
AAGTTGGGTTAGGATTAGAGATACGGTCTGCGTACCCCCTCCCAGTTTCA
TTTTCCCATAAACTTAATTTCTCGGGAAGGCGGTGCGGTCAGCACAGCCT
TGGCGATGTTTTGTATTAATCTTGGTTTTAGTGGGGGGTATTGTAGGGGG
TAGGGTTAGGGATACGATACCCCCATCTCTATTTCGTAGATTAATGATGA
CATGCTCGCGCAGGCGGCCCATGGTGGTGGCGCCGATCGCAACCCGATTG
TTTGTGCTAGGGTGGTATCGTATGAGCTTGGAAGCAGAAGAGCCGGTGGT
TGCAGGCACACAAGTCGGGCGCCAGCGTGTGTCGTCGGGAAAGTGAACAG
TAGTACGGGGGAGGAGATGAACAGCCGAGAGCGTTGTACTAAAGTTGTCA
GTGCGATGGGTATGCATGAGGTGGAACCGTTTCTGTGGACCCATTTCGGC
TTCGATTCGGTGTTCGGTTCGCTCAAATGCTCCACGCACAAGCACGAGGG
TCTCTCACATCTGGTACATGCCGCATGCCCTCGCCGACTCGTCCTGTTTT
TTTCGTTTGTTCTTCGCGGCGCTGTTTTTTCCTTCATCTCAAATCTGATA
CCGCATGCCCTCCCCAACTTCTCCTTTTGTTTTCATCGTTCCTTGCTGCT
ATGTTTCCCCCTCAAATCTCACATTTCATACCGCATGCCCTCCCCGATTC
GTCCTGTGTTTTTATATCGTTCCTGGCTTGTCTGTTTTTTTCTTCAGCCG
AGGGGGGTAACTACACCGGCTGACCAAGGCCATGACGAGGGCGAAAAAGC
CCCCGCATGGGGGGCGCCTGAGGCGGGCCAGCAGGCGGAGAGGGAGGTGG
AGGTCGCTGAGCCGGTGTACATCAACGTGGAGGGGCACTTCGCTTGCCTC
CTTCTGGACGACGATACTCCCCTCAACCGCTGCAAGGTGTGCGAGGGCGA
AGCGATGGGCGAAACCGTTCGACTTTGTAAACCGTTCGAGTTGGTGTTGC
CGTATGTATCATTTTTACCACCATTACATCTCAAAATTTTGTGCCGATTT
GGTGTACACGTGCATGCGCTGTGAGCAACCCACTTTTTTTTTCTTGTTTA
ACGCGATCCATTTCTATCCATAGATAAGGGTCTAGGATACATTGGTAGTG
AATTGATTTATGCCATTCGCGGAGCATGTTTCGCGAGAAGACGCCGAGAT
CGAACCCCTCCCCGCTCAAGACCCTCCCCCTCCCCAGAATGGTGGTCCAG
TAAATTATGTTGCGCGGGGTCGAGAACGCTCACTCCGCGCAAAGGGGATG
ATCCCACCACGTTGTGTTAAATTAGTCAAGCACCCTCGAGGCAGTTACAC
AGCAGCGCTTATAATCGTCTCTGGAAGTGAAAGCACCAGAAAATAAATCA
AGTCGTTCGCAGCTGTAATCCGTGTGCAAGAAAGTAAGCACAAGATGCAG
CAGCAGGATGCAGCGCACCCTCCATGCGACTCGCCGAATACCTCACGGCG
CTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGCT
CCGCCCCGCCTTTTTTGTAGAGATGCAAGGCCAATGGTCTAACGACTACG
GCATGCACGACTATGAGTACACAACCCCCCCGTCCCCCCGTCCCCCCCGA
CTCCTGCCGTGAATTATAAATGACAATATTGCAGCCGGGTTTGGCTCGAC
AATCGTCGTCATCTACGGCTTCTTTCGCTCCGTCGCACTCTTCTGCCCCG
AAGGACCACCCGGACCCGACCATCGAGTTCGACCTAGCACACGCGTGCCC
GGGGCAGCCACAGCCCCGGGCACGGGCTGGGACTTTGTCGAGCCTGATCC
ATCCAAGGCTGAGCACCGTTTCCCAGAACAGCGTCAAGAGTGAGAACAGC
ATCTACGACTACCCGGGGTTGATACAACACGGCAGGTCGAGCGCTGTTCG
GATGTCCATGAACAACAACAGCAACGCCTCTGGGGGGGCGGGTAAGCCTT
CCCGACCGCGCCCGGTTTCGCTCGGCGGGAGCCTGGGCTTGCAGCTTAGC
GCGCTAGGGTTAGGGGTAGGGGGCGGCGGCGGCGGGGGCGGCGGCGGGGG
CGGCGGCGGCGGCGGTGGGAGCAAAGCCGGCGGAAAGTCGGGGCGGCCGC
AGTCGATCGATTTGCGCAGAGTGTCTTCGGCGGGCAACGATGCCATGGGC
TTGGAGTCGGCGCACCTGGAGACCCCGCAGCAGCGGTGGGCCATGCCCCG
ACGACGGCCCCGGCACAGCCACGACGCCTCCGGCGGCGGGGGATACCCGG
ACGCCAGCGGCTCGGCGGTCGGCGCCGCCGACGGGGCCGCGGTGAGAGGC
TCCAAGGGCGGCGGGAAGCGCGCGCGCTCACGGACGGGTTGGGCCACGGG
TTTCCTCAAGAGCCCTACCCTGGGCGGGCTGCGAGCGGGGGTCGGCAAGG
CCGCGAAGGCAACAAGGTCCAAGTCGACGTCCTCCGCCGTGCCGATGTCG
AACAGGGGTGGGGGCGGCGGAGCGGGGGCCAAGACCCCGGCGGGCTCCGT
GGATTCGTCTTGCGCGAGCACGGTGCGTGCGGGGGAGGAGGCCTCGGCAG
TGGGCACCCCTCGATTTGTGCCGCCAGCCTTGGCGTCTTCGGCGGTGCTG
TGCGGGATGGCGCCGGGCCTTGAGTTGTCGCCGACGGTGCTGGGCGCGAC
CTTTGTCGCGGCAGGCTTGCCCTCAGAGGAGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7571:3213..7196-

>mRNA_E_fasciculatus_S2_contig7571.15734.1 ID=mRNA_E_fasciculatus_S2_contig7571.15734.1|Name=mRNA_E_fasciculatus_S2_contig7571.15734.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1518bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7571:3213..7196- (Ectocarpus fasciculatus EfasUO2)
GACCAGACTGTGGTTTTGAGGGACATCGAATACTCGGAGTTGGTGCGGGT
GGAGATGCGTCGGCCGCGGAAGATAGGAGAGAATCCGGTGCTGGCGAGCG
TTGAGTTTGAGGTTCACGACGTGATCGGCCTGAGCCTCCGGGAGGGTGCG
TCTGTCTTCCAGCTCGAGTGCGACCGATCACGCGCGCGCTACGGGATAAT
CCTGCTAGCGTTTCGCTTCGACCCGCCGGTGGCGGCCGACGTGCTCGGAC
CTTTAGACGGGGCGGGGTTGACGAGCTTGCCGAGGGGGGTAACTACACCG
GCTGACCAAGGCCATGACGAGGGCGAAAAAGCCCCCGCATGGGGGGCGCC
TGAGGCGGGCCAGCAGGCGGAGAGGGAGGTGGAGGTCGCTGAGCCGGTGT
ACATCAACGTGGAGGGGCACTTCGCTTGCCTCCTTCTGGACGACGATACT
CCCCTCAACCGCTGCAAGCCGGGTTTGGCTCGACAATCGTCGTCATCTAC
GGCTTCTTTCGCTCCGTCGCACTCTTCTGCCCCGAAGGACCACCCGGACC
CGACCATCGAGTTCGACCTAGCACACGCGTGCCCGGGGCAGCCACAGCCC
CGGGCACGGGCTGGGACTTTGTCGAGCCTGATCCATCCAAGGCTGAGCAC
CGTTTCCCAGAACAGCGTCAAGAGTGAGAACAGCATCTACGACTACCCGG
GGTTGATACAACACGGCAGGTCGAGCGCTGTTCGGATGTCCATGAACAAC
AACAGCAACGCCTCTGGGGGGGCGGGTAAGCCTTCCCGACCGCGCCCGGT
TTCGCTCGGCGGGAGCCTGGGCTTGCAGCTTAGCGCGCTAGGGTTAGGGG
TAGGGGGCGGCGGCGGCGGGGGCGGCGGCGGGGGCGGCGGCGGCGGCGGT
GGGAGCAAAGCCGGCGGAAAGTCGGGGCGGCCGCAGTCGATCGATTTGCG
CAGAGTGTCTTCGGCGGGCAACGATGCCATGGGCTTGGAGTCGGCGCACC
TGGAGACCCCGCAGCAGCGGTGGGCCATGCCCCGACGACGGCCCCGGCAC
AGCCACGACGCCTCCGGCGGCGGGGGATACCCGGACGCCAGCGGCTCGGC
GGTCGGCGCCGCCGACGGGGCCGCGGTGAGAGGCTCCAAGGGCGGCGGGA
AGCGCGCGCGCTCACGGACGGGTTGGGCCACGGGTTTCCTCAAGAGCCCT
ACCCTGGGCGGGCTGCGAGCGGGGGTCGGCAAGGCCGCGAAGGCAACAAG
GTCCAAGTCGACGTCCTCCGCCGTGCCGATGTCGAACAGGGGTGGGGGCG
GCGGAGCGGGGGCCAAGACCCCGGCGGGCTCCGTGGATTCGTCTTGCGCG
AGCACGGTGCGTGCGGGGGAGGAGGCCTCGGCAGTGGGCACCCCTCGATT
TGTGCCGCCAGCCTTGGCGTCTTCGGCGGTGCTGTGCGGGATGGCGCCGG
GCCTTGAGTTGTCGCCGACGGTGCTGGGCGCGACCTTTGTCGCGGCAGGC
TTGCCCTCAGAGGAGTAG
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