|
|
Homology
BLAST of mRNA_E_fasciculatus_S2_contig752.15682.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH0_9PHAE) HSP 1 Score: 575 bits (1483), Expect = 2.300e-194 Identity = 401/487 (82.34%), Postives = 421/487 (86.45%), Query Frame = 2
Query: 167 MQWSQRATPATTASVSTPSSAGKRERWWRVLASAKWEIGSEPRHQQTGTRLRPGRWLLSAWKRTA-QFRSNMRWGSLSYIATTWEEQSTTTDICSAAEGRAKVDPSTCSNN-EAVQGPEKAGGNDATNSAMVASFLRRRAPQGLAFALVAATAYVIYRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTRGVVERADDAKSGLAQRDDED--DKSAGSGQSLGGKEGEMDGRMDVGEEANRKGTSEHDEPGPTACPSPEHHREGNDGGKTTHGGVRKDGQQQGDVSSDRANQGGEQPGYSAEEQDPALARMSRGQSLLSESSTEDILAEADHLIADAANQSFNSIRATTTPTKPRPRKTRATSKATSPTRAARSTSRDSPRGASSPKPTLTRMTSASRSSDTRSPKRPRVYPEVSGEEVDALVSLTHRALQRDPSALSEIAKDASLQQGG 1615
MQWS+RATPATTAS S PSSAGKRE W RVL SAKWE+GSEPR QQTGTRLR GRWLLSAW++TA QFRSNMRWGSLSYIA WEEQSTTTDICSAA+GRAK D STCSNN EA+QGPE AGG DATN A+VASFLRRRAPQGLAFALV AT YV+Y XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DTR V ERA+D + GLA+R DED + A G+S+GGKE EMDGRMDVGEE RKGTSEHDEPGPTACPSPEH REGND GK TH GVR DGQQQ DVSSD A QGG QP +SAEEQD ALARMSRGQSLLSESSTEDILAEADHLIADAAN +FNSIRA TTPTKPR K RATSKAT P +AAR S+DSPRG S K TL+RMTSASRSSDTRSPKRPRVYPEVSGEEVDALVSLTHRAL+RDPSALSEIAKDASLQQGG
Sbjct: 1 MQWSKRATPATTASASKPSSAGKREGWSRVLESAKWELGSEPRDQQTGTRLRSGRWLLSAWRKTAHQFRSNMRWGSLSYIARAWEEQSTTTDICSAADGRAKADSSTCSNNNEAIQGPENAGGTDATNPAVVASFLRRRAPQGLAFALVVATVYVVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------DTRDVAERANDTRPGLAKRSDEDVDGEHAVGGKSVGGKEEEMDGRMDVGEEGTRKGTSEHDEPGPTACPSPEHDREGNDVGKVTHAGVRTDGQQQDDVSSDGAIQGGGQPSHSAEEQDSALARMSRGQSLLSESSTEDILAEADHLIADAANNTFNSIRAMTTPTKPRAGKLRATSKATGPIQAARRKSKDSPRGTPSLKLTLSRMTSASRSSDTRSPKRPRVYPEVSGEEVDALVSLTHRALERDPSALSEIAKDASLQQGG 478
BLAST of mRNA_E_fasciculatus_S2_contig752.15682.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF2_ECTSI) HSP 1 Score: 104 bits (259), Expect = 1.940e-23 Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 2
Query: 1442 MTSASRSSDTRSPKRPRVYPEVSGEEVDALVSLTHRALQRDPSALSEIAKDASLQQGG 1615
MTS SRSSDTRSPKRPRVYPEVSGEEVDALVSLT RAL+RDPSALSEIAKDASLQQGG
Sbjct: 1 MTSVSRSSDTRSPKRPRVYPEVSGEEVDALVSLTQRALERDPSALSEIAKDASLQQGG 58
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2844 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-18_003880.1 |
| Cds size | 1458 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842413.621516-UTR-E_fasciculatus_S2_contig752:16480..16646 | 1696842413.621516-UTR-E_fasciculatus_S2_contig752:16480..16646 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig752 16481..16646 + |
| 1696842413.673793-UTR-E_fasciculatus_S2_contig752:20116..21336 | 1696842413.673793-UTR-E_fasciculatus_S2_contig752:20116..21336 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig752 20117..21336 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842413.6417658-CDS-E_fasciculatus_S2_contig752:16646..16844 | 1696842413.6417658-CDS-E_fasciculatus_S2_contig752:16646..16844 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig752 16647..16844 + |
| 1696842413.6554785-CDS-E_fasciculatus_S2_contig752:17414..17512 | 1696842413.6554785-CDS-E_fasciculatus_S2_contig752:17414..17512 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig752 17415..17512 + |
| 1696842413.6645-CDS-E_fasciculatus_S2_contig752:18954..20116 | 1696842413.6645-CDS-E_fasciculatus_S2_contig752:18954..20116 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig752 18955..20116 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig752.15682.1 >prot_E_fasciculatus_S2_contig752.15682.1 ID=prot_E_fasciculatus_S2_contig752.15682.1|Name=mRNA_E_fasciculatus_S2_contig752.15682.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=486bp
MQWSQRATPATTASVSTPSSAGKRERWWRVLASAKWEIGSEPRHQQTGTR LRPGRWLLSAWKRTAQFRSNMRWGSLSYIATTWEEQSTTTDICSAAEGRA KVDPSTCSNNEAVQGPEKAGGNDATNSAMVASFLRRRAPQGLAFALVAAT AYVIYRRRHRRPGGRPRSRRQQSKRRSDVAVDAARKWWWQRAGGNGRKAE GKDDGVGKSGGGGGVGGGGGGGDTRGVVERADDAKSGLAQRDDEDDKSAG SGQSLGGKEGEMDGRMDVGEEANRKGTSEHDEPGPTACPSPEHHREGNDG GKTTHGGVRKDGQQQGDVSSDRANQGGEQPGYSAEEQDPALARMSRGQSL LSESSTEDILAEADHLIADAANQSFNSIRATTTPTKPRPRKTRATSKATS PTRAARSTSRDSPRGASSPKPTLTRMTSASRSSDTRSPKRPRVYPEVSGE EVDALVSLTHRALQRDPSALSEIAKDASLQQGGGN* back to topmRNA from alignment at E_fasciculatus_S2_contig752:16481..21336+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig752.15682.1 ID=mRNA_E_fasciculatus_S2_contig752.15682.1|Name=mRNA_E_fasciculatus_S2_contig752.15682.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4856bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig752:16481..21336+ (Ectocarpus fasciculatus EfasUO2) GCGCAACGCCAAAGGAAGGCTATATCGTGCCGTTGGGCCTCCCTGTTTTC
ATATCGTGAGCTCGTGAAGGTTTGCTGCTGTGAGTCGTCATCACCTACGC
CACCAGAAGCTCGAGGGAATGAACAAGCCGAGAGCCTCCGAGAGATAGAT
AGACTAGCAGTGCTGTATGCAATGGAGCCAGAGAGCAACCCCGGCAACAA
CAGCGTCCGTGTCAACGCCGAGCTCTGCTGGAAAGAGGGAGCGCTGGTGG
AGGGTGCTAGCGTCAGCCAAGTGGGAAATAGGGAGCGAGCCGCGTCACCA
GCAAACAGGGACGAGGCTCAGGCCTGGCAGGTGGCTGTTGTCGGCGTGGA
AAAGAACTGCGCAGGTAGGTGATGATGGATGCGACTGAGAGAGAGAGAGT
TTCAGAGGGTATACCGCCGTTGCACAAAAGGCATTCTTCAACGGGCGCTT
TCTGACGAAGATGACAAAAGATAGAGGCAGATGCATGTACAGCAGGTGCG
TAGCACGTGCTTCCCGTTGACGCATCACAACAAGGCATTTCGACGCGGCA
CTTTCTACTACTTGCACACGCCCCATCACCACAGCAGCCGGGGTTTTATT
TCGTTACTTTTTACCCGCTGAATGACGAGCCGGTGACAAAATGACGGCGC
AACAATCCGGGTGTCTTGCTGTCGAAGGCTGCCCCCCGACCTCTAGACGC
TGCACGCCACACTTCAACATAGGCTTTCGAATCGCCAACCTCCCTCGTCT
CCAACCTCATCACGGGTAGCCGCGGCGCGAAATTACCGACCTCCCTCACA
GAAGTACTCTGTGTTTGTCACTTCTTGAACTAAATTGTTCGTCCGTTATT
ATCGTGCTAATAGCTGCATCGCTTTGCCCACACCCTTGACTTGCGTTGCG
TGACGACGACGGATGACAACGTTTTGTTGTGTAGTTTCGGTCGAACATGA
GATGGGGGAGCTTGAGCTACATCGCAACGACGTGGGAGGAGCAATCGACG
ACTACAGACATCTGCAGCGCGGCAGAGGGCAGGTATCTACAGCATACTGC
ATGATGAGTGTGTGTACAGCTCGGAGCATCTTTTTTGTGCGGGCTCTGCT
GTTCATGCAACCACAGGGCGAAGTCTATCGGTCGGTGTGGTGTCAGGGCG
GCGTTTTTAATACGTCGTTGTTTAATCTGCATTTTCATCCCTACATGCGC
GGTCCTATTCATACCTACAGCAGCAGGCGCCCGCAGGGTTACCTACATAC
AATACAGCGGTAGTTTGGCCGGGGCTTGGGTTGTTTGTTCCAAGGGTTGG
ATATTATCTACGAATGGCCGTCATATAGATAGGTACTATTACTAAGAAAG
CTCACAAACGGTGCTGAAATTCTTAGATACAAGTAGTGTTGTTGTGTTTG
TCGAGGCTATATCAATTTCTTGACTGTCGAGCTGTATATGCGGGTGCTAA
CTTTAACTTTTGTGTGCACATATGCTCGTCGTGGAGTGACGAATGTTGTC
GAGAGCGGGAGCGACCCTTCATCAACATTTCAGGCCGACAGCAGCCGTGC
CGACGAAATCGATTCCTGCAGCTTTGTGTCGGGCATGGCTATGCGTTGCA
GTTCGAAGCCCCCTTTGATTGAACCGCATTCGATTCCTATAGCGACCAAG
CAAAGAGGGCGAGACCCCATTCAACACATTGTGATCGCAGCAATGCCACA
AAAATCTGAAGAGAAATCGCTTGAAGAACGACCACAAAGAACGGACCTTC
CATCCTAGATGGGACTACATAGTTGGTGTGTGTTGGAGCCCTCACGGCTG
AGGTTCACTAATGCCTTAAAGTCATGGGAGGTTGATTGCAGAAACTGCCC
GGCAAGAGTCAAGGTAGACCAACAAAAGTTCCACCGAGAAACCATTCGTT
GTGCGTGCGGTGTGCTCTCCTCCTCAGCCACATGAACACGTCGGGTGCGA
GCACCTGGACGAAGTTTGTCGCAAAGGGTGTACAACCGTGTACAACCGAG
GAAATATGCCCCAGCATCTCGAGTGCCCACCTTTTGCTTCACTTTGCTTC
GTGCCTCGCCATACCCTGCTGTTTGGGATTTGTCCAAGATCATTAGCTGC
TGTGAAGCCTAGCTTCATTGACCTTTCTACCTCTCCACACCAACAATATG
GCACGCCTCACATGGATGCTGATTTTTGCCCGTGTGATTGGGGAATTTGC
TCTCGACGAACTGCTCCAAGAATAACTTTTGGTAGAGCAAAGCTCTGCTG
AAGGAGTTAGTCCAACCCAGACTCTTTCAACTTCACGTCGGGCAGAGCGG
GAGGGCCGTGTGTGCAAAGGCGTACTATGATAAGTCTGACTTTTCTTTAC
CGTCTAACGACGCCCCCTCGCCCCCCACACCTCCGTATTGTTCTTCCCAT
ATCGTGTTTCTATTATCGGTGGTAAAACGCGCATCAATTTCGTTATGGGG
GCACTCGCGGTTGCTTCGCTGGAGGGCGAAGGTGGACCCAAGCACATGCA
GCAACAACGAGGCTGTCCAGGGTCCGGAGAAAGCTGGAGGCAACGATGCG
ACCAACTCCGCCATGGTCGCTTCCTTTCTCCGCAGGAGGGCCCCTCAGGG
TCTCGCGTTTGCCCTAGTGGCCGCGACGGCGTACGTGATTTATCGGAGGA
GGCATCGCAGACCGGGGGGGCGTCCACGTTCCCGGCGCCAGCAGAGCAAA
AGGCGTAGCGATGTCGCGGTCGACGCGGCTAGAAAATGGTGGTGGCAACG
CGCTGGTGGGAATGGCCGGAAGGCGGAGGGCAAGGATGATGGCGTCGGGA
AAAGCGGTGGTGGTGGTGGTGTTGGTGGTGGTGGTGGTGGCGGCGACACC
CGTGGCGTGGTGGAGAGAGCCGACGACGCAAAGTCTGGGCTTGCACAGCG
TGACGACGAGGATGACAAAAGTGCCGGTAGTGGGCAAAGTCTTGGTGGTA
AGGAGGGGGAGATGGATGGCCGAATGGACGTTGGGGAAGAGGCGAATCGT
AAAGGTACCTCCGAACATGATGAGCCAGGGCCTACCGCGTGCCCAAGCCC
TGAGCACCACCGGGAGGGAAACGACGGCGGGAAAACTACTCATGGGGGTG
TTCGTAAAGACGGTCAGCAACAGGGTGACGTGTCGTCTGACCGGGCTAAT
CAGGGAGGGGAACAACCTGGTTACTCGGCGGAAGAGCAAGACCCAGCATT
GGCGAGAATGAGCCGAGGGCAGTCCTTGTTGTCCGAAAGCAGCACCGAGG
ACATCCTTGCCGAGGCTGATCACCTGATCGCCGATGCCGCGAACCAATCC
TTCAACAGCATTCGTGCTACGACAACGCCTACCAAGCCGAGACCGAGGAA
AACCCGTGCGACAAGCAAAGCAACCAGCCCCACTCGGGCAGCTCGAAGCA
CGTCGCGAGACTCTCCGCGCGGTGCCTCTAGTCCCAAGCCGACCCTCACG
CGCATGACCAGCGCGAGTCGGTCGAGCGACACTCGCAGCCCGAAGCGCCC
GCGCGTGTACCCGGAGGTGTCCGGCGAAGAAGTCGACGCCCTCGTCAGCC
TAACGCATAGGGCGCTTCAGCGGGACCCCTCGGCTCTGAGCGAGATCGCC
AAGGACGCGTCCCTTCAGCAAGGCGGTGGTAACTAACGCGTTGTTGTCCG
TCGGTGAGCTAGCGAGAAACGTCTCCAGCGTGTGGGGCAATGGGCGGGTG
GATACGTCTTCTCGGGCCTGCGGTGTATCGGTAGCCCAAGGGTTCGGTGT
GTTATTTTGGAGGCTTGTAGATGAGATTTCGTTCGGAGTATAGGCGGAAG
ACGGGTACCCCAAACCGGTTGCGCTGCCGCACCCTCCGGCATATTGCTAT
TGAGAGCTTGGCTCGTGGCTTGCAGCACATGCGTTTGTATCATAACCTGC
ATTTTTGTATCAAACTTGCATGCAGTAGACTCATTTTTGGAAGATGTGAA
AACTTAGACGTGTGAACCATGTCCCCCAGCTATTATGTTTTGTCGCGCGC
GTGGTTGCACGCTGAGACATGCACCTTGACTGAGGTTTGCAGTTCACGCC
ACCATGCAGTAATCCCCTGATTTTTTGGTGAGGCTCGTTGCTTTCCTCTT
TCGATAGGGTTGTTGACAGGGCATCCACAACTTGCGCTCTAGCTCTCACA
ACAGTGTATGAAGAAATCAAGGCCTGTTGTCCTCACAGCCAACTTCTCGC
TGTTGTTGACCAGCGTATTAATGGATGATGAAAACTCTCGCCCGGAAAAT
AGGCGGCCAATACCCTGTCTGTGTATGTCGCCGTGCCATGGGCGAGTAGA
CTTCAGCGCGGCGCGATGTGCTCCAAGTACTTCACACACACCGGGCACAA
GTCGCCCGCGGACATGATGCCGTTGTTTTTTTCTTGGCGTTAGGTCAAGC
ATTTTAGTGTTGTGGGGCAAAACGCTGAGAGAATGGTTACAGGTCGCATA
GATTCTTCTTCCAGTGACTGGGAAAGGGGGCGCAGTTGGAACCGCGTGTC
CATGTGATTGCTTCCGCATTATACTAGGAGAGGCTGTACTATTGGAGGGC
CGGTAGCATGTCAATTCAAACTGTATATGGTGTGTTTGATGGTGAGATGT
GTGACAAGTGAGCGAATTGGGGGAAAATCGTGGAACGAAGTCAGTGTGTG
TCCGTTTCTCCCGGAGTTTTTGTTCGGCTGTTGAGGCAAAGTCCTGTCTT
AGTCTAGTCCTGCTGATCCTGCGACAGCCGGGGCCATCTGTTCGCTAACA
CATCCGCCATCATGTCGTGGTTGGGTGGTACAACGTTGTACATAAGAGAG
TACAGTACCGGCGGATCGGATTCGAAGCGTCCTCCCGGCCCACCCAGATC
GTGTGG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig752:16481..21336+ >mRNA_E_fasciculatus_S2_contig752.15682.1 ID=mRNA_E_fasciculatus_S2_contig752.15682.1|Name=mRNA_E_fasciculatus_S2_contig752.15682.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1458bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig752:16481..21336+ (Ectocarpus fasciculatus EfasUO2) ATGCAATGGAGCCAGAGAGCAACCCCGGCAACAACAGCGTCCGTGTCAAC GCCGAGCTCTGCTGGAAAGAGGGAGCGCTGGTGGAGGGTGCTAGCGTCAG CCAAGTGGGAAATAGGGAGCGAGCCGCGTCACCAGCAAACAGGGACGAGG CTCAGGCCTGGCAGGTGGCTGTTGTCGGCGTGGAAAAGAACTGCGCAGTT TCGGTCGAACATGAGATGGGGGAGCTTGAGCTACATCGCAACGACGTGGG AGGAGCAATCGACGACTACAGACATCTGCAGCGCGGCAGAGGGCAGGGCG AAGGTGGACCCAAGCACATGCAGCAACAACGAGGCTGTCCAGGGTCCGGA GAAAGCTGGAGGCAACGATGCGACCAACTCCGCCATGGTCGCTTCCTTTC TCCGCAGGAGGGCCCCTCAGGGTCTCGCGTTTGCCCTAGTGGCCGCGACG GCGTACGTGATTTATCGGAGGAGGCATCGCAGACCGGGGGGGCGTCCACG TTCCCGGCGCCAGCAGAGCAAAAGGCGTAGCGATGTCGCGGTCGACGCGG CTAGAAAATGGTGGTGGCAACGCGCTGGTGGGAATGGCCGGAAGGCGGAG GGCAAGGATGATGGCGTCGGGAAAAGCGGTGGTGGTGGTGGTGTTGGTGG TGGTGGTGGTGGCGGCGACACCCGTGGCGTGGTGGAGAGAGCCGACGACG CAAAGTCTGGGCTTGCACAGCGTGACGACGAGGATGACAAAAGTGCCGGT AGTGGGCAAAGTCTTGGTGGTAAGGAGGGGGAGATGGATGGCCGAATGGA CGTTGGGGAAGAGGCGAATCGTAAAGGTACCTCCGAACATGATGAGCCAG GGCCTACCGCGTGCCCAAGCCCTGAGCACCACCGGGAGGGAAACGACGGC GGGAAAACTACTCATGGGGGTGTTCGTAAAGACGGTCAGCAACAGGGTGA CGTGTCGTCTGACCGGGCTAATCAGGGAGGGGAACAACCTGGTTACTCGG CGGAAGAGCAAGACCCAGCATTGGCGAGAATGAGCCGAGGGCAGTCCTTG TTGTCCGAAAGCAGCACCGAGGACATCCTTGCCGAGGCTGATCACCTGAT CGCCGATGCCGCGAACCAATCCTTCAACAGCATTCGTGCTACGACAACGC CTACCAAGCCGAGACCGAGGAAAACCCGTGCGACAAGCAAAGCAACCAGC CCCACTCGGGCAGCTCGAAGCACGTCGCGAGACTCTCCGCGCGGTGCCTC TAGTCCCAAGCCGACCCTCACGCGCATGACCAGCGCGAGTCGGTCGAGCG ACACTCGCAGCCCGAAGCGCCCGCGCGTGTACCCGGAGGTGTCCGGCGAA GAAGTCGACGCCCTCGTCAGCCTAACGCATAGGGCGCTTCAGCGGGACCC CTCGGCTCTGAGCGAGATCGCCAAGGACGCGTCCCTTCAGCAAGGCGGTG GTAACTAA back to top
|