mRNA_E_fasciculatus_S2_contig7475.15641.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7475.15641.1
Unique NamemRNA_E_fasciculatus_S2_contig7475.15641.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D3_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 4.790e-54
Identity = 84/90 (93.33%), Postives = 85/90 (94.44%), Query Frame = 3
Query:   24 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHRKPRGDQGGG---DPLAALP 284
            RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWA+EGCCSRHR  RGDQGGG   DPLAALP
Sbjct:   89 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWAEEGCCSRHRPRRGDQGGGGAGDPLAALP 178          
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V6U6_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.070e-40
Identity = 56/72 (77.78%), Postives = 59/72 (81.94%), Query Frame = 3
Query:   21 GRVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHR 236
            GR CGYVF+RGDIAWNCR CQ DSTCV CD CF  SDH GH V+FHRT+PGGCCDCGD EAW  EGCC RHR
Sbjct:   43 GRPCGYVFRRGDIAWNCRTCQTDSTCVLCDRCFHESDHEGHEVFFHRTSPGGCCDCGDIEAWKIEGCCPRHR 114          
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EF35_9STRA)

HSP 1 Score: 139 bits (350), Expect = 4.100e-40
Identity = 57/71 (80.28%), Postives = 57/71 (80.28%), Query Frame = 3
Query:   24 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHR 236
            R CGYVFKRGDIAWNCR CQ DSTCV CD CFR SDH GH VYFHRT PGGCCDCGD EAW  EGCC  HR
Sbjct:   27 RPCGYVFKRGDIAWNCRTCQTDSTCVICDTCFRSSDHEGHEVYFHRTTPGGCCDCGDAEAWKPEGCCPAHR 97          
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LKQ2_9STRA)

HSP 1 Score: 138 bits (347), Expect = 6.650e-40
Identity = 57/76 (75.00%), Postives = 62/76 (81.58%), Query Frame = 3
Query:    9 TATIGRVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHR 236
            T T  R CGYVFKRGD+AWNCR CQ DSTCV CDACF+ SDHTGH V FH+T+PGGCCDCGD EAWA +GCC  HR
Sbjct:   30 TMTTPRPCGYVFKRGDMAWNCRTCQTDSTCVLCDACFQASDHTGHEVSFHQTSPGGCCDCGDVEAWAAKGCCDLHR 105          
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P848_9STRA)

HSP 1 Score: 136 bits (342), Expect = 6.520e-39
Identity = 61/93 (65.59%), Postives = 66/93 (70.97%), Query Frame = 3
Query:   24 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHR-------KPRGDQGGGDPLAAL 281
            R CGYVF+RGDIAWNCR CQ D TCV CD CFRRSDH GH VYFHRT PGGCCDCGD EAW  +GCC  HR       +P GD    DP+ A+
Sbjct:   51 RPCGYVFQRGDIAWNCRTCQTDPTCVICDDCFRRSDHQGHEVYFHRTTPGGCCDCGDMEAWKIDGCCDVHRPDTTQVVQPSGD----DPMEAV 139          
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase (Fragment) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SCK7_9STRA)

HSP 1 Score: 137 bits (346), Expect = 5.410e-38
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 3
Query:   30 CGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHRKPR 245
            CGYVFKRGDIAWNCR CQ DSTCV CD CFR S+H GH V+FHRT+PGGCCDCGD EAW  EGCCS+H  P+
Sbjct:  135 CGYVFKRGDIAWNCRTCQADSTCVLCDECFRNSNHKGHEVFFHRTSPGGCCDCGDTEAWKAEGCCSKHVPPQ 206          
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKC4_FISSO)

HSP 1 Score: 140 bits (354), Expect = 7.840e-37
Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 3
Query:   24 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHR 236
            R CGYVFKRGDIAWNCR CQ D+TCV CD CFR SDH GH VYFHRT+PGGCCDCGD EAW  EGCC +HR
Sbjct:  185 RPCGYVFKRGDIAWNCRTCQTDATCVICDTCFRHSDHQGHEVYFHRTSPGGCCDCGDAEAWKSEGCCDKHR 255          
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YNA8_NANGC)

HSP 1 Score: 130 bits (327), Expect = 2.430e-36
Identity = 55/86 (63.95%), Postives = 61/86 (70.93%), Query Frame = 3
Query:   27 VCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHRKPRGDQGGGDPLAALP 284
            VCGY FKRGD+ WNCR CQ D TCVQCD CFR SDH GH VYFH+ +PGGCCDCGD EAW   GCC+ H    G     DP+ +LP
Sbjct:   72 VCGYTFKRGDLCWNCRSCQTDPTCVQCDPCFRASDHAGHEVYFHQASPGGCCDCGDLEAWDRAGCCTAHS---GSDPFQDPVDSLP 154          
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z3G4_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.510e-36
Identity = 56/72 (77.78%), Postives = 59/72 (81.94%), Query Frame = 3
Query:   21 GRVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHR 236
            GR CGYVF+RGDIAWNCR CQ DSTCV CD CF  SDH GH V+FHRT+PGGCCDCGD EAW  EGCC RHR
Sbjct:  288 GRPCGYVFRRGDIAWNCRTCQTDSTCVLCDRCFHESDHEGHEVFFHRTSPGGCCDCGDIEAWKVEGCCPRHR 359          
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Match: E3 (ubiquitin-protein ligase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGT1_9STRA)

HSP 1 Score: 138 bits (348), Expect = 5.010e-36
Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = 3
Query:   24 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWADEGCCSRHRKPRGDQGGGDPLAAL 281
            R CGYVF+ GDI WNCR C+ DSTCVQCDACF+ SDHTGH V+FH+ +P GCCDCGDEEAWA EGCC RHR+ R ++   DPL  L
Sbjct:   92 RYCGYVFREGDICWNCRTCEKDSTCVQCDACFQLSDHTGHDVFFHKASPNGCCDCGDEEAWAWEGCCPRHRR-RENEELRDPLEVL 176          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7475.15641.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E34.790e-5493.33ubiquitin-protein ligase n=1 Tax=Ectocarpus silicu... [more]
E33.070e-4077.78ubiquitin-protein ligase (Fragment) n=1 Tax=Ditylu... [more]
E34.100e-4080.28ubiquitin-protein ligase (Fragment) n=1 Tax=Pseudo... [more]
E36.650e-4075.00ubiquitin-protein ligase (Fragment) n=1 Tax=Leptoc... [more]
E36.520e-3965.59ubiquitin-protein ligase (Fragment) n=1 Tax=Amphor... [more]
E35.410e-3876.39ubiquitin-protein ligase (Fragment) n=2 Tax=Eucamp... [more]
E37.840e-3778.87ubiquitin-protein ligase n=2 Tax=Fistulifera solar... [more]
E32.430e-3663.95ubiquitin-protein ligase (Fragment) n=1 Tax=Nannoc... [more]
E32.510e-3677.78ubiquitin-protein ligase (Fragment) n=1 Tax=Ditylu... [more]
E35.010e-3668.60ubiquitin-protein ligase (Fragment) n=1 Tax=Pingui... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7475contigE_fasciculatus_S2_contig7475:650..1243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size288
Hectar predicted targeting categoryother localisation
Exons2
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842409.5255752-CDS-E_fasciculatus_S2_contig7475:651..7901696842409.5255752-CDS-E_fasciculatus_S2_contig7475:651..790Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7475 652..790 -
1696842409.53722-CDS-E_fasciculatus_S2_contig7475:1097..12431696842409.53722-CDS-E_fasciculatus_S2_contig7475:1097..1243Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7475 1098..1243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7475.15641.1prot_E_fasciculatus_S2_contig7475.15641.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7475 652..1243 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7475.15641.1

>prot_E_fasciculatus_S2_contig7475.15641.1 ID=prot_E_fasciculatus_S2_contig7475.15641.1|Name=mRNA_E_fasciculatus_S2_contig7475.15641.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=95bp
RRRRRRSEGSAGTCSSAATSRGTAASARWTARACSATPASGARTTRGTRC
TSTGRRRAAAATAATRRPGRMKAAAAGIASREETRVAVIPWPRYR
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mRNA from alignment at E_fasciculatus_S2_contig7475:650..1243-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7475.15641.1 ID=mRNA_E_fasciculatus_S2_contig7475.15641.1|Name=mRNA_E_fasciculatus_S2_contig7475.15641.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=594bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7475:650..1243- (Ectocarpus fasciculatus EfasUO2)
CGACGACGACGGCGACGATCGGAAGGGTCTGCGGGTACGTGTTCAAGCGC GGCGACATCGCGTGGAACTGCCGCAAGTGCCAGGTGGACAGCACGTGCGT GCAGTGCGACGCCTGCTTCCGGCGCTCGGACCACACGGGGCACCCGGTAA GACCCCTCTACGAAACCTATCCTTAACCTTCTCGAGGACGCGCGTGGTCG AATGATGTAACCGCCAAGGCGTGCAAAACATAAGAGAAAGCCCCCCTCCC TCCCTCCCCTGTTTGGGGCTCACACTTATATGTGGACGTGTTTTGTATCA GTCTTTATCCCAAGTAGCTTGTGCGCTTTCCATCCACGCTTTTTCCTAGC GTACAAATACAGGCAATTTTGCTTTAGTTTTCGTGAAAGATTGAGCCTCT GTTTCTTGACGCGAAAAGCATTTCTCAACTGCTGCGGGCCCGTGCTGTGC CAGGTGTACTTCCACCGGACGGCGCCGGGCGGCTGCTGCGACTGCGGCGA CGAGGAGGCCTGGGCGGATGAAGGCTGCTGCAGCCGGCATCGCAAGCCGA GAGGAGACCAGGGTGGCGGTGATCCCCTGGCCGCGCTACCGCCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7475:650..1243-

>mRNA_E_fasciculatus_S2_contig7475.15641.1 ID=mRNA_E_fasciculatus_S2_contig7475.15641.1|Name=mRNA_E_fasciculatus_S2_contig7475.15641.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=285bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7475:650..1243- (Ectocarpus fasciculatus EfasUO2)
CGACGACGACGGCGACGATCGGAAGGGTCTGCGGGTACGTGTTCAAGCGC
GGCGACATCGCGTGGAACTGCCGCAAGTGCCAGGTGGACAGCACGTGCGT
GCAGTGCGACGCCTGCTTCCGGCGCTCGGACCACACGGGGCACCCGGTGT
ACTTCCACCGGACGGCGCCGGGCGGCTGCTGCGACTGCGGCGACGAGGAG
GCCTGGGCGGATGAAGGCTGCTGCAGCCGGCATCGCAAGCCGAGAGGAGA
CCAGGGTGGCGGTGATCCCCTGGCCGCGCTACCGC
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