mRNA_E_fasciculatus_S2_contig7428.15601.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7428.15601.1
Unique NamemRNA_E_fasciculatus_S2_contig7428.15601.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7428.15601.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT5_ECTSI)

HSP 1 Score: 369 bits (948), Expect = 1.920e-127
Identity = 197/247 (79.76%), Postives = 207/247 (83.81%), Query Frame = 1 
Query:    1 MEREQAVREQVANRGLMEDSWVPTDASEQQLDDSFHPDTFVNVGNFLNSQETSERARSTSETSCQTPPPATVASVGTVTHVVDPSAPLTSLLSGGSRVSRIVLGLLAVVVVLLGTNACSYNQGRAWKVHTTLYVCYEQWLMWYGMPVFSRDPQAETSALREKVDKLEAAARKSASKPTWPSSTSPPTCPGSQLIDTCWFKVGWGDCANEALEDPIKPIEDAIRFAMDSATGVIGVVTETFANDMSQV 741
            MEREQAVREQVANRGLM DSWVPTDASEQQLDDSFHPDTFVNVGNFL+SQE+SERARSTSETS QTPPPAT+ASV TVTHVVDPSAPLTSLLSGGSR  RIVLGLLAVVV+LLGTNA SYNQ RAWK                          AETS+LREKV KLEAAAR SASKPTW +STS  TCPGSQLIDTCWFKVGWGDCANEALEDP+KPIEDA RFA+DSA+GVIG VTETFA+DMSQV
Sbjct:    1 MEREQAVREQVANRGLMGDSWVPTDASEQQLDDSFHPDTFVNVGNFLSSQESSERARSTSETSSQTPPPATIASVSTVTHVVDPSAPLTSLLSGGSRAGRIVLGLLAVVVMLLGTNAYSYNQSRAWK--------------------------AETSSLREKVGKLEAAARTSASKPTWSTSTSSTTCPGSQLIDTCWFKVGWGDCANEALEDPVKPIEDAFRFALDSASGVIGAVTETFASDMSQV 221
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7428.15601.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.920e-12779.76protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7428contigE_fasciculatus_S2_contig7428:503..3314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size759
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001320.1
Cds size759
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842405.5353868-CDS-E_fasciculatus_S2_contig7428:502..6611696842405.5353868-CDS-E_fasciculatus_S2_contig7428:502..661Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7428 503..661 -
1696842405.545563-CDS-E_fasciculatus_S2_contig7428:1313..15151696842405.545563-CDS-E_fasciculatus_S2_contig7428:1313..1515Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7428 1314..1515 -
1696842405.5629406-CDS-E_fasciculatus_S2_contig7428:1711..19781696842405.5629406-CDS-E_fasciculatus_S2_contig7428:1711..1978Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7428 1712..1978 -
1696842405.5749435-CDS-E_fasciculatus_S2_contig7428:3183..33141696842405.5749435-CDS-E_fasciculatus_S2_contig7428:3183..3314Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7428 3184..3314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7428.15601.1prot_E_fasciculatus_S2_contig7428.15601.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7428 503..3314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7428.15601.1

>prot_E_fasciculatus_S2_contig7428.15601.1 ID=prot_E_fasciculatus_S2_contig7428.15601.1|Name=mRNA_E_fasciculatus_S2_contig7428.15601.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=253bp
MEREQAVREQVANRGLMEDSWVPTDASEQQLDDSFHPDTFVNVGNFLNSQ
ETSERARSTSETSCQTPPPATVASVGTVTHVVDPSAPLTSLLSGGSRVSR
IVLGLLAVVVVLLGTNACSYNQGRAWKVHTTLYVCYEQWLMWYGMPVFSR
DPQAETSALREKVDKLEAAARKSASKPTWPSSTSPPTCPGSQLIDTCWFK
VGWGDCANEALEDPIKPIEDAIRFAMDSATGVIGVVTETFANDMSQVLVG
QV*
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mRNA from alignment at E_fasciculatus_S2_contig7428:503..3314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7428.15601.1 ID=mRNA_E_fasciculatus_S2_contig7428.15601.1|Name=mRNA_E_fasciculatus_S2_contig7428.15601.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2812bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7428:503..3314- (Ectocarpus fasciculatus EfasUO2)
ATGGAGAGGGAGCAGGCGGTTAGGGAGCAAGTGGCGAACCGTGGCCTCAT
GGAAGACAGCTGGGTTCCCACAGATGCCTCGGAGCAGCAGCTGGACGACT
CGTTCCATCCGGACACCTTTGTGAACGTTGGGTGAGGCTCCGTCCCTCCT
ATACTACCCCCAGCTGCTCACGTCCTTGTTTTAGAATACAACTAGCCTTT
ACCTCTTGTGGAGAGGACACGTGGACATCCGGCGTCATGCCGCTCTGCCT
CTATCCTATCCGAGCTTCGGCCGCTACTCCTCGTTTCAGTGATGGCGGTT
TTTGTGTTCGTGATAGGTATTATTGTCTCGTAGTGCCGATCATCGATTCC
AAAGCTGATCATGTACGTACATGCTCAGATGCGGATACACGGCGGTAAAG
AGGCGGAGAGATGGCACCCGACACCCCCCTCTACTGCTATTTTGCTGCTT
TAGACCGATTTTCCAGCTCGATTGCTTCACAACCAAGCAAGCTCATGCGA
ACACCGCAAATGTTGGCGTTGGAAACATGTCATCAAGGCTTTTCCACCAG
CGTATCGGTCTCTTTCTGTAGATACCATACCCCATTGGTCGTGGAGCAAT
CGAGCTTTGGAAGTCGGTGTGGAGGGGGTTGCCGTATCTCCCTCCGCCTC
TTGCGGTATTCCGTGTTTTGGTCGTGATAAACTGCGATACGGCCGTGTTC
ACCACCTTGGCACCTTGGCTCTCTACCGTACCTCGTGTTGAGCGAGCGTT
CTCGAGAACGTGTCTGCAGGAACATGTGCGCTAGTCTAAGGCTGATAACA
CGGGACCGTTATGGCTGGGGCCTCGTTATTATCGTACAAAATTCTTGCAG
AAACTCGGACGGCCTGACTCCCTTGAAGTATTGAATATATATGTTCACCA
GCAAGATATCCCGCTCTATTCACGGAGGCGTCCGCGTTAGTTGGAAGAGT
ACGGACATTAGAAGCACAGTACTGAGCGGAGACCGGAACGGCTTTTGAAT
GTGAAGGCAACAACAACCCCTCACCACCCGGTGTCGGAGGTTTTCCGTCG
TTCACAGCAGTTTTATTTAGACGCTTAAAGATTAAACATACAATAGCAGA
CGTTCTTCAAGGAAGGGGTACGCTGAAGTATTAAAGTGGCACCTGCTGGT
TACTGGACTCCGCTGCGTCTGTCAGGGGTCCTCCCCATTGAACCAGTGAA
CGAGCCAGCGGTCCCGGCGCGAACAACACTAACGTAGCACACGGCATCCC
GCGGCGACTCTTGTCGTACACCATTCACACTTGCGATCCGTGCTCTCCCC
GCCGTCCTGCTCTCCGCCATCGTATCTATCCACCAGGAACTTTCTCAACT
CTCAAGAGACCAGCGAACGGGCGCGCTCGACCTCCGAGACCTCCTGCCAG
ACTCCCCCCCCCGCTACCGTCGCCAGCGTTGGGACCGTTACCCACGTGGT
GGACCCATCGGCACCGCTAACGTCTCTTCTTTCCGGCGGCAGCCGCGTCA
GCCGCATCGTCCTCGGGCTTCTGGCGGTTGTGGTGGTTCTGCTGGGAACT
AACGCCTGCTCTTACAATCAGGGTCGCGCTTGGAAGGTGCACACAACGCT
GTAGTCTAGTGACGATTGGTGTTCCGGTTGTGGTTATCGTGCGGGGAACT
AACGCCTACTCTTTCGATCAGAGTCGCGCTTGGACGGTGCACACCCAAAG
CTATATAAACATGTAAACATGAAACTGACAACATAAACAAATGTAAGATT
GGTAGATACTGCTGCCGTCAGTGATTGGGTTACGTTGGATGGTGGAGAGT
GTGTGCTATGAACAATGGTTGATGTGGTACGGAATGCCCGTGTTTTCCCG
CGATCCGCAGGCCGAAACCTCCGCGTTGCGAGAGAAGGTCGACAAGCTTG
AGGCCGCCGCCCGTAAGTCGGCAAGCAAACCGACGTGGCCCTCAAGCACC
TCCCCGCCCACCTGCCCAGGGAGCCAACTAATTGACACGTGCTGGTTTAA
GGTATTATGGGGTTACCGTACCGCCGCGATTCGGTCGCGAGGAGAGACTG
TTGCTGCTGTGTTGTAGTAATGATGAAAGAAGGAGTCAGAGTTCCCATCT
TGATAGTCGTAGAGGTTCCGGCATGTGGCTTGCTTGTTTTTTCGTTTCCT
CCGTGCAGGTAAACAAGAAGTCAAGCCATTGGTTAAGTAGAGATCGACAA
ACACGTTTCATTTTAAGCAAACTAGTGCGGCTGGATTAGAAACCACGACC
AACAACAGTTGTATTCTACACCAGTGATTTCATCCACACACTGATCAATG
ATTCCAATCTCCTTTTTCAAGGGCTTTGTCGTGATGATTCCAAGTGCGGA
TTCGATTCATCACAAGTTTGCCGCATCACACCCCACCGAGCTGCCAACGG
GCCTTGCCATTCGAGCATTTTCCGTTTCGCGTCAACGGACCAAGTCTCGG
TGAGGCCGAGGATCCTTTACGTGATTAACTCGCCTGTGCACGCATCATCA
CGACGGACGCGCCTTAACGTGCGTGAATATCCCGTCATAAGGCTGGCTCA
TCATGCGTGCCGCAAACCTTTTTCACGAGAAGGGCGGGATCATATACATT
TTGCCTCTGTTGGTGCCACGTGTCGTGGCGCCTGGTGCTCTTTATTTTAA
AAGGTGGGATGGGGCGACTGCGCCAACGAGGCGCTGGAAGACCCCATAAA
GCCCATCGAGGACGCCATTCGCTTTGCTATGGACTCCGCCACTGGGGTCA
TCGGCGTCGTAACAGAAACCTTCGCAAATGACATGAGCCAGGTACTTGTC
GGGCAGGTGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7428:503..3314-

>mRNA_E_fasciculatus_S2_contig7428.15601.1 ID=mRNA_E_fasciculatus_S2_contig7428.15601.1|Name=mRNA_E_fasciculatus_S2_contig7428.15601.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=759bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7428:503..3314- (Ectocarpus fasciculatus EfasUO2)
ATGGAGAGGGAGCAGGCGGTTAGGGAGCAAGTGGCGAACCGTGGCCTCAT
GGAAGACAGCTGGGTTCCCACAGATGCCTCGGAGCAGCAGCTGGACGACT
CGTTCCATCCGGACACCTTTGTGAACGTTGGGAACTTTCTCAACTCTCAA
GAGACCAGCGAACGGGCGCGCTCGACCTCCGAGACCTCCTGCCAGACTCC
CCCCCCCGCTACCGTCGCCAGCGTTGGGACCGTTACCCACGTGGTGGACC
CATCGGCACCGCTAACGTCTCTTCTTTCCGGCGGCAGCCGCGTCAGCCGC
ATCGTCCTCGGGCTTCTGGCGGTTGTGGTGGTTCTGCTGGGAACTAACGC
CTGCTCTTACAATCAGGGTCGCGCTTGGAAGGTGCACACAACGCTGTATG
TGTGCTATGAACAATGGTTGATGTGGTACGGAATGCCCGTGTTTTCCCGC
GATCCGCAGGCCGAAACCTCCGCGTTGCGAGAGAAGGTCGACAAGCTTGA
GGCCGCCGCCCGTAAGTCGGCAAGCAAACCGACGTGGCCCTCAAGCACCT
CCCCGCCCACCTGCCCAGGGAGCCAACTAATTGACACGTGCTGGTTTAAG
GTGGGATGGGGCGACTGCGCCAACGAGGCGCTGGAAGACCCCATAAAGCC
CATCGAGGACGCCATTCGCTTTGCTATGGACTCCGCCACTGGGGTCATCG
GCGTCGTAACAGAAACCTTCGCAAATGACATGAGCCAGGTACTTGTCGGG
CAGGTGTAG
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