mRNA_E_fasciculatus_S2_contig737.15554.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig737.15554.1
Unique NamemRNA_E_fasciculatus_S2_contig737.15554.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig737.15554.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV6_ECTSI)

HSP 1 Score: 429 bits (1102), Expect = 1.400e-134
Identity = 250/257 (97.28%), Postives = 255/257 (99.22%), Query Frame = 1 
Query:    1 AVFRTLPAEVAGELAYVHDQMILDFLMIKACPEVKASALDTAEKWEEVCRQICVQAAYIRVAALWAEEEEEVVLMADARAEEGVRKAEAKLRKQREKEVKDAEKDAAEMAHLMANDPEAHMRRVVQKRADDADRRRHEAKSKDEDQSVADEERKTLENKKAMDXXXXXXXXXXXXXXXQQELNELADSDPAEYDRRIKEWHKRKIEGRDGTSSSLGGDAVDHTESGDLERRKSLARERRSARRVAMQTRPSIGLPKK 771
            AVFRTLPAEVA ELAYVHDQMILDFLMIKACPEVKASALDTAEKWEEVCRQIC+QAAYIRVAALWAEEEEEVVLMADARAEEGVRKAEAKLRKQRE+EVKDAEKDAAEMAHLMANDPEAHMRRVVQKRADDADRRR EAK+KDEDQSVA+EERKTLENKKAMDXXXXXXXXXXXXXXXQQELNELADSDPAEYDRRIKEWHKRKIEGRDGTSSSLGGDAVDHTESGDLERRKSLARERRSARRVAMQTRPSIG+PKK
Sbjct: 3360 AVFRTLPAEVADELAYVHDQMILDFLMIKACPEVKASALDTAEKWEEVCRQICIQAAYIRVAALWAEEEEEVVLMADARAEEGVRKAEAKLRKQREQEVKDAEKDAAEMAHLMANDPEAHMRRVVQKRADDADRRRREAKAKDEDQSVANEERKTLENKKAMDXXXXXXXXXXXXXXXQQELNELADSDPAEYDRRIKEWHKRKIEGRDGTSSSLGGDAVDHTESGDLERRKSLARERRSARRVAMQTRPSIGIPKK 3616
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig737.15554.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.400e-13497.28protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig737contigE_fasciculatus_S2_contig737:3899..7145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score436.4
Seed ortholog evalue9.2e-120
Seed eggNOG ortholog2880.D8LDV6
Model size775
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2CAM4@1,2S38S@2759
Cds size774
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig737.15554.1prot_E_fasciculatus_S2_contig737.15554.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig737 3899..7145 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842400.3786492-CDS-E_fasciculatus_S2_contig737:3898..39471696842400.3786492-CDS-E_fasciculatus_S2_contig737:3898..3947Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig737 3899..3947 -
1696842400.393391-CDS-E_fasciculatus_S2_contig737:4423..46321696842400.393391-CDS-E_fasciculatus_S2_contig737:4423..4632Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig737 4424..4632 -
1696842400.404841-CDS-E_fasciculatus_S2_contig737:5062..52241696842400.404841-CDS-E_fasciculatus_S2_contig737:5062..5224Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig737 5063..5224 -
1696842400.4260828-CDS-E_fasciculatus_S2_contig737:5558..57081696842400.4260828-CDS-E_fasciculatus_S2_contig737:5558..5708Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig737 5559..5708 -
1696842400.4419894-CDS-E_fasciculatus_S2_contig737:6300..64171696842400.4419894-CDS-E_fasciculatus_S2_contig737:6300..6417Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig737 6301..6417 -
1696842400.4522192-CDS-E_fasciculatus_S2_contig737:7058..71451696842400.4522192-CDS-E_fasciculatus_S2_contig737:7058..7145Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig737 7059..7145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig737.15554.1

>prot_E_fasciculatus_S2_contig737.15554.1 ID=prot_E_fasciculatus_S2_contig737.15554.1|Name=mRNA_E_fasciculatus_S2_contig737.15554.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=258bp
AVFRTLPAEVAGELAYVHDQMILDFLMIKACPEVKASALDTAEKWEEVCR
QICVQAAYIRVAALWAEEEEEVVLMADARAEEGVRKAEAKLRKQREKEVK
DAEKDAAEMAHLMANDPEAHMRRVVQKRADDADRRRHEAKSKDEDQSVAD
EERKTLENKKAMDKERLAKEAKEKEAREQQELNELADSDPAEYDRRIKEW
HKRKIEGRDGTSSSLGGDAVDHTESGDLERRKSLARERRSARRVAMQTRP
SIGLPKK*
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mRNA from alignment at E_fasciculatus_S2_contig737:3899..7145-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig737.15554.1 ID=mRNA_E_fasciculatus_S2_contig737.15554.1|Name=mRNA_E_fasciculatus_S2_contig737.15554.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3247bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig737:3899..7145- (Ectocarpus fasciculatus EfasUO2)
GCCGTTTTCCGAACTCTACCGGCAGAAGTGGCTGGCGAGCTGGCCTACGT
CCACGACCAAATGATCCTCGACTTCCTGATGATTAAGGTGCAATGAGGTT
TTATGTGTAAAGAAGCAACACCTCAGCGCAAGCAACGATCCGGCCCGTAC
CTTAGCAGTTGTGCGCCTCAACCGTGAGAAGTCCACCGTAAACGGTCCTT
GGGCACCAGACCTCCTCCGGACCGTCCAGTCTGTTTCGGGGATACCAGAA
CGGGGAGGTTGTTGTTAGGCCCCATACACGTGATTTAGGTGGAATAGGCG
TTGATGATCATTTTGTAGCGCTCAGTTTTGCGATGCGTTCCACCGTTGAG
GAATCGAGCATTACAGTCTGGTGCCCCGGTTGTCGAGGGTTCGTACGCCA
CAACCTGGCCCAGACACGAAACAGTGCACTTCTGCGTGCCATAAACGGTA
CACTGTTTGGCCCTCGAAGAGGACCGCACACCAACATGAGCACCACGAAT
GAGGCCTACACATTACCCCAGGCGATTTCGTTACGCAGCCCCGTAAAACG
AAATCACCTTTGAGGTGACATTCTGGCGTTGTACGTTGCGTGAAAGATAC
ATTTCGGAGCCATCGACGTGAGCACCTTCGTGCCGGTACAAGAGAAAAAG
TATCACCTGTATCCCCAGCCCGCCCTCACGCCACCCGTTTTCGTGTACAC
CCTTCGGTCTGCCTTTCTACGGCAAAAGGCGTGTCCGGAAGTGAAGGCGT
CGGCTCTGGACACAGCTGAGAAATGGGAAGAGGTCTGCCGACAGATTTGC
GTACAAGCGGCGTACATACGGGTGGCCGCGTTGTGGGCAGAAGAGGTGAA
GCAAAGAAACAACTAATACACAAAAAAATTCAAATTGTAGTACGATACAG
CAGGAAATACCCCGCCCTTTCACGAGACGGTAGTATGGTGAAGGTATCGA
GGACGTGCGCTTTGACGCGGTCCTAGCTGTAGAAAGGGAATAATGTCTCA
TAGTCGGAAGATCCATGCTTCAAGTTGGGACTCTTCGGTGCCTTGCTATC
GTCAGGCGTAGGCGGAACACTGTAGTGTCCCTGTGCATGTTCTCGACTAC
GTGCGTTGTTGTACGCTATCACAACGCAGCAATTGACCATACATGAACAT
CGTTCCTTCGTGCATCCATGGTCTGCGTGCTGGATTTGCTTGGAAGAGGG
CAACTTCGTGTCCCCAAGCTCAACGTTGACAAAATCGATTTCATACAAAC
AACTTTAATCCGGCCCTGCCTGCGTTTGGACTAACGCCCAGTTGAGTGAC
ACGTTAGCAACAGGACTATCGATGATGTGCCACTCCTTGTACGCCTTTTC
ACGTAAGTGGTGTTCACGTAGGCATGAAAAATAGGTTAATATTAGATATA
TGGGGTTTGCCATGAATGCTTCGGTCTCGATTTGCAGGAAGAGGAGGTCG
TGTTGATGGCGGACGCCCGTGCTGAGGAGGGAGTGCGCAAGGCGGAAGCG
AAGCTGAGAAAACAGCGGGAGAAGGAGGTCAAAGACGCCGAGAAGGATGC
CGCTGAGATGGCCCACCTCATGGCGAATGACCCCGAGGTGCACGTTGTTG
ACATCCCTAGATAGTGTCCTCTTTCTTCCGTTCAATACCGTGCCCCCTTT
CTAATAATAATTTGCAGCACTTTGCGCTTCCCCGTACAGGCACAGCCGGC
ATCGTGTGACAGCATTCTACGTACGCTTCCGATGATTCACAGCAATTGCG
ATGTTCAGCGGTGGACGTATCACGTTCGCTTGTTTGAAGCTCCCCATCGT
GCCTACTAACGTTTCAACCTTTATCTCAACCTACCTGCTTCCGTGATGCT
TCTGTCATCGCCTGGACGATGGTAACGACGACGACGACGACGACGACGAC
GACGACGACGACGACCGAAAGGCGCACATGAGGAGAGTCGTTCAAAAGCG
AGCCGACGATGCGGACAGGCGTAGGCACGAGGCTAAGTCCAAGGACGAAG
ACCAGTCGGTGGCAGACGAGGAGCGCAAGACCCTTGAGAACAAGAAGGCC
ATGGACAAGGAGAGACTCGCGAAAGAGGCTAAGGTGTTCATGCAGCGTTT
GTGGTACAACGTGACCAGTAGGAAATGGGACTCGGAAGATTTCGGTGTCT
GTGTCTGTACTGTTGGTCCACGTTCGTTCAAGCATACCCATCGCCTGTTC
ACTTGGAGGAACCAGGGGGGGGGGGGGGGGTACTCCAACGCGAATGGCGT
TCCTAGCAGCGAAGACTCCTTGACTCTTCGGCGGCAATTGCGGTGTCATG
AACAGATCCCGTCCAATCACGTTTGCTCCCGTTCAAACGTCGGTTGTCCT
GTGTGAGGGCACAGGTCAGGCGGCGTGCTCCTTACTCACGCTCTTGGTGG
CAATGGCTCCGACGGCTTGAATAAGATATATACTGATACCAGCTATTCCA
CAATGAGAGGCACACACGGTTCCTGCCAATCATGGCTCCTGCCTTTCTGA
TCCTCCACGCCAGGAAAAGGAGGCAAGAGAACAGCAGGAGCTGAATGAGC
TAGCGGACTCGGACCCAGCCGAGTACGACCGGCGGATCAAGGAGTGGCAC
AAGAGAAAGATCGAGGGGAGGGATGGGACTTCGAGCAGCCTGGGCGGCGA
CGCAGTGGATCATACAGAAAGCGGCGACCTAGAGCGAAGAAAATCGCTAG
CGCGGGAGAGAAGATCGGCAAGGTAATGCGGCATCAAGCAGTGCACATCG
GACTATTGTTCTGGCCTGGCTTTTTTACGTGTGTCCTGACTTCGCAGATT
TTCTGGTTATGAACTTCGTTGGTAAAGTTGAGACTCCACCTAGAGTGTCG
TTCGACAGATTGTTGTGCTCGCACAAGCACAAACAGCGGGTTCCCTCGTT
CAGCGAACAGTGAGCCCGAAATCGCTTAATGGTGGACATCGTCACAGGGA
TGTATATCAACCCCTACCCTGAGTTTAGAACCATGACACTGGATTTGTGG
TGCGGCTCCTCGGCAGTGCACCTCATCACTGAAACAGCTCGTCTGTAGCA
AAAAAAGTATCAAATAAAGTTCGGAACACCCACTACATACCACACGCACC
GTTTCCGTCGTTCGCGCTGACAAAACACTTGTTCGGTTCCTTGTTGCATT
CGTGACATGTTGGTGTGGAACCGCGGTTCGGCATTGTGGTTCGCCCAGGA
GGGTCGCCATGCAGACGCGACCATCGATCGGCCTTCCAAAGAAGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig737:3899..7145-

>mRNA_E_fasciculatus_S2_contig737.15554.1 ID=mRNA_E_fasciculatus_S2_contig737.15554.1|Name=mRNA_E_fasciculatus_S2_contig737.15554.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=774bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig737:3899..7145- (Ectocarpus fasciculatus EfasUO2)
GCCGTTTTCCGAACTCTACCGGCAGAAGTGGCTGGCGAGCTGGCCTACGT
CCACGACCAAATGATCCTCGACTTCCTGATGATTAAGGCGTGTCCGGAAG
TGAAGGCGTCGGCTCTGGACACAGCTGAGAAATGGGAAGAGGTCTGCCGA
CAGATTTGCGTACAAGCGGCGTACATACGGGTGGCCGCGTTGTGGGCAGA
AGAGGAAGAGGAGGTCGTGTTGATGGCGGACGCCCGTGCTGAGGAGGGAG
TGCGCAAGGCGGAAGCGAAGCTGAGAAAACAGCGGGAGAAGGAGGTCAAA
GACGCCGAGAAGGATGCCGCTGAGATGGCCCACCTCATGGCGAATGACCC
CGAGGCGCACATGAGGAGAGTCGTTCAAAAGCGAGCCGACGATGCGGACA
GGCGTAGGCACGAGGCTAAGTCCAAGGACGAAGACCAGTCGGTGGCAGAC
GAGGAGCGCAAGACCCTTGAGAACAAGAAGGCCATGGACAAGGAGAGACT
CGCGAAAGAGGCTAAGGAAAAGGAGGCAAGAGAACAGCAGGAGCTGAATG
AGCTAGCGGACTCGGACCCAGCCGAGTACGACCGGCGGATCAAGGAGTGG
CACAAGAGAAAGATCGAGGGGAGGGATGGGACTTCGAGCAGCCTGGGCGG
CGACGCAGTGGATCATACAGAAAGCGGCGACCTAGAGCGAAGAAAATCGC
TAGCGCGGGAGAGAAGATCGGCAAGGAGGGTCGCCATGCAGACGCGACCA
TCGATCGGCCTTCCAAAGAAGTAG
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