mRNA_E_fasciculatus_S2_contig731.15501.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig731.15501.1
Unique NamemRNA_E_fasciculatus_S2_contig731.15501.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK0_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.760e-21
Identity = 50/79 (63.29%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQEDVPRVKN 243
            LDELV   A H+  CEV C EVKSR  TQ KA  SYGGDVRKV DMAR +VICD PEALK  Y  I+   Q DV RV N
Sbjct:  112 LDELVADIAKHTGECEVHCAEVKSRASTQRKASKSYGGDVRKVADMARVSVICDNPEALKRAYLAIVESFQGDVLRVAN 190          
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK27_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 9.800e-21
Identity = 54/80 (67.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQ-EDVPRVKN 243
            LDELVT AA     C V CV VKS + T+ KA    GGDVRKV DMAR TVICDTPEALK V+S IMGLLQ +DV RVKN
Sbjct:   80 LDELVTNAAEGLETCNVHCVVVKSLESTRRKASQFCGGDVRKVADMARVTVICDTPEALKQVFSKIMGLLQPQDVLRVKN 159          
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: Tetratricopeptide (repeat containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH0_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.830e-20
Identity = 50/79 (63.29%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQEDVPRVKN 243
            LDELV   A H+  CEV C EVKSR  TQ KAR SYGGDVRKV DMAR +VICD P+ALK  Y  I+   Q DV RV N
Sbjct:  112 LDELVADIAEHTGECEVHCAEVKSRAITQRKARKSYGGDVRKVADMARISVICDNPQALKRAYLAIVESFQGDVLRVAN 190          
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 8.790e-20
Identity = 50/79 (63.29%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQEDVPRVKN 243
            LDELV   A  +  C+V C EVKSR  TQ KAR SY GDVRKVTDMAR +VICDTPEALK  Y  I+   Q DV RV N
Sbjct: 1539 LDELVVDIAKDTGGCQVHCAEVKSRASTQRKARKSYDGDVRKVTDMARVSVICDTPEALKRAYLAIVESFQGDVLRVAN 1617          
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K147_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.620e-19
Identity = 53/80 (66.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQ-EDVPRVKN 243
            LDELV+K A  S +  VQ V+VKSR RT+EKAR S GGDVRKV DMAR TV+C TPEALK+VYS I GL +   V RVKN
Sbjct:  209 LDELVSKIAHDSCKFVVQYVDVKSRDRTREKARKSCGGDVRKVADMARVTVVCATPEALKEVYSAITGLPKPHHVLRVKN 288          
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.610e-18
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQEDVPRVKN 243
            LDELV   A  S++ EVQCVE+KSR+ T+ KA   Y GDVRKV DMAR TVIC TPEALK+ Y  IM L   +V RVKN
Sbjct:  113 LDELVMNVAHDSSKYEVQCVEIKSRESTRRKASTGYDGDVRKVADMARVTVICATPEALKEAYLAIMEL--PEVLRVKN 189          
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: TPR (repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT0_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 3.630e-18
Identity = 47/79 (59.49%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQEDVPRVKN 243
            LDELV      +  C+VQC EVKSR  TQ KAR SYG DVRKV DMAR +VICDTPE  K  Y  I+   Q DV RV N
Sbjct:  112 LDELVADITKGTGGCQVQCAEVKSRASTQRKARKSYGADVRKVADMARVSVICDTPETFKRAYLAIVESFQGDVLRVAN 190          
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: Kinesin (light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH93_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 6.550e-18
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQEDVPRVKN 243
            LDELVTK A  S++ EVQ  EVKSR+ T+ KA   + GDVRKV DMAR T+IC  PEALK+ YS+IM + ++ V R+KN
Sbjct:  112 LDELVTKVAHDSSKYEVQRAEVKSRESTRRKASREHDGDVRKVADMARVTLICANPEALKEAYSSIMEMPEQHVLRIKN 190          
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG4_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.160e-17
Identity = 50/79 (63.29%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    7 LDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQEDVPRVKN 243
            LDE++T  A    R EVQ VEVKSR+ TQ K R  YGGDVRKV DMAR +VIC TPE L+ VYS IMG L  DV RV N
Sbjct:  113 LDEIITNLADDWGRYEVQHVEVKSRESTQRKVRRFYGGDVRKVADMARVSVICLTPEDLQHVYSDIMGSL--DVRRVTN 189          
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Match: TPR (repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL3_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 8.040e-17
Identity = 50/81 (61.73%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    1 QGLDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMARATVICDTPEALKDVYSTIMGLLQEDVPRVKN 243
            Q LDE++T  A    R EVQ VEVKS + TQ K R  Y GDVRKVTDMAR TVIC TPE L+ VYS IMG +  DV RV N
Sbjct:  111 QRLDEIITNLADDWGRYEVQYVEVKSWESTQRKVRRLYDGDVRKVTDMARVTVICLTPEDLQQVYSDIMGSM--DVRRVTN 189          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig731.15501.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.760e-2163.29protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.800e-2167.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Tetratricopeptide1.830e-2063.29repeat containing protein n=1 Tax=Ectocarpus silic... [more]
CCHC-type8.790e-2063.29domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.620e-1966.25protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.610e-1862.03protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
TPR3.630e-1859.49repeat-containing protein n=1 Tax=Ectocarpus silic... [more]
Kinesin6.550e-1858.23light chain-like protein n=1 Tax=Ectocarpus silicu... [more]
Uncharacterized3.160e-1763.29protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
TPR8.040e-1761.73repeat-containing protein n=1 Tax=Ectocarpus silic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig731contigE_fasciculatus_S2_contig731:4029..4828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score95.9
Seed ortholog evalue9.2e-18
Seed eggNOG ortholog2880.D7FXH0
Model size244
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
Cds size243
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842395.4866586-CDS-E_fasciculatus_S2_contig731:4028..42471696842395.4866586-CDS-E_fasciculatus_S2_contig731:4028..4247Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig731 4029..4247 +
1696842395.497683-CDS-E_fasciculatus_S2_contig731:4804..48281696842395.497683-CDS-E_fasciculatus_S2_contig731:4804..4828Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig731 4805..4828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig731.15501.1prot_E_fasciculatus_S2_contig731.15501.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig731 4029..4828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig731.15501.1

>prot_E_fasciculatus_S2_contig731.15501.1 ID=prot_E_fasciculatus_S2_contig731.15501.1|Name=mRNA_E_fasciculatus_S2_contig731.15501.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=81bp
QGLDELVTKAAGHSARCEVQCVEVKSRQRTQEKARDSYGGDVRKVTDMAR
ATVICDTPEALKDVYSTIMGLLQEDVPRVKN
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mRNA from alignment at E_fasciculatus_S2_contig731:4029..4828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig731.15501.1 ID=mRNA_E_fasciculatus_S2_contig731.15501.1|Name=mRNA_E_fasciculatus_S2_contig731.15501.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=800bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig731:4029..4828+ (Ectocarpus fasciculatus EfasUO2)
CAGGGTTTGGACGAGCTCGTAACGAAAGCGGCGGGCCACTCGGCGAGGTG CGAGGTTCAGTGCGTGGAGGTCAAGTCGCGGCAAAGAACGCAGGAGAAGG CCAGGGACTCCTATGGTGGGGATGTCCGAAAGGTTACTGACATGGCTAGG GCGACTGTCATCTGTGACACACCGGAGGCCTTGAAAGATGTGTACTCGAC CATAATGGGATTACTGCAGGTGAGTACATCTAGGATATGCTGACATGGGG ACGACCGCCAATTCAGGAAGAGGTACTGCTGTACCTTACAAATTCGCCCT CTGTGTGCAGTCTTGTTGTTCTTGCGGCACCTTCCGAAAATCGGGGGCCG TGTTGTAGATTGAAGTAATCGGTGATAATCAAACCGTGATGCTCAAGGTC ATCAGATGTCGATCGGTTTTGTATTGCGAAATTATGCCTGTGTTTCATGT GTGTATCATTCGCCATGGTCAGTTTTGTACCCCTTCGTTCGCCCTCCCTT GAACTGAAGAGAGGGGACCTCGTGTTCCATGCTGCGCCCGTGCCTAGCCG TACCAAGCAACCCCCGCCCGAGGTCGAGAGCCGCTGCTCACTCTCCTGTC TAGACATTTGGCTGGCATCATTTCTCAACACGTTTTCACCAGGGCTCAGC TGGCACAGGCCTCCCTTGCCCTCCACCGGGGCAGAGAGCGCGGCCTAACC CTGCCCTGTTTCAGGACCACAAATCATGGAACAACTTGTTTTCTGCTGCG CGCGTGAAACGGCTTTTTTTTTGTAGGAAGATGTTCCTAGGGTAAAAAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig731:4029..4828+

>mRNA_E_fasciculatus_S2_contig731.15501.1 ID=mRNA_E_fasciculatus_S2_contig731.15501.1|Name=mRNA_E_fasciculatus_S2_contig731.15501.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=243bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig731:4029..4828+ (Ectocarpus fasciculatus EfasUO2)
CAGGGTTTGGACGAGCTCGTAACGAAAGCGGCGGGCCACTCGGCGAGGTG
CGAGGTTCAGTGCGTGGAGGTCAAGTCGCGGCAAAGAACGCAGGAGAAGG
CCAGGGACTCCTATGGTGGGGATGTCCGAAAGGTTACTGACATGGCTAGG
GCGACTGTCATCTGTGACACACCGGAGGCCTTGAAAGATGTGTACTCGAC
CATAATGGGATTACTGCAGGAAGATGTTCCTAGGGTAAAAAAC
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