mRNA_E_fasciculatus_S2_contig726.15455.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig726.15455.1
Unique NamemRNA_E_fasciculatus_S2_contig726.15455.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig726.15455.1 vs.
Match: SHQ1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6M6_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 5.510e-46
Identity = 75/79 (94.94%), Postives = 79/79 (100.00%), Query Frame = 2 
Query:   59 MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLRLTLPYEVGGDDDDGSCKAVYDPTDESGTIT 295
            MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGT+FSFYCKPYLLRLTLPYEVGG+DDDGSCKAVYDP+DE+GTIT
Sbjct:    1 MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTDFSFYCKPYLLRLTLPYEVGGEDDDGSCKAVYDPSDENGTIT 79
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig726.15455.1 vs.
Match: SHQ1 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ4_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 8.410e-46
Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = 2 
Query:   59 MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLRLTLPYEVGGDDDDGSCKAVYDPTDESGTIT 295
            MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLRLTLPYEVGG+DDDGSCKAVYDP+DE+GTIT
Sbjct:    1 MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLRLTLPYEVGGEDDDGSCKAVYDPSDENGTIT 79
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig726.15455.1 vs.
Match: SHQ1 (protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH0_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.830e-23
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = 2 
Query:   59 MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHV--DGTEFSFYCKPYLLRLTLPYEVGGDDDDGSCKAVYDPTDESGTI 292
            MP TPRF V QTD  V V I+VPHIRV +AETHV  DG   SFYCKPYLL+L LP  V G+DD+  C+AVYDP  + GT+
Sbjct:    1 MPVTPRFSVEQTDDFVCVTIRVPHIRVSAAETHVEEDGCGVSFYCKPYLLKLRLPLPVRGEDDE-RCRAVYDPAADGGTV 79
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig726.15455.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3V6_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.020e-21
Identity = 46/79 (58.23%), Postives = 52/79 (65.82%), Query Frame = 2 
Query:   59 MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLRLTLPYEVGGDDDDGSCKAVYDPTDESGTIT 295
            MP TP+F + Q D  V V I VP IRV  AE HV+G  FSFYCKPYLL+LTLP EV    DD  C+ VYD    +GTIT
Sbjct:    1 MPTTPKFSLRQDDDFVYVDIHVPWIRVSEAEIHVEGCAFSFYCKPYLLKLTLPGEVV---DDERCRGVYDLDKNNGTIT 76
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig726.15455.1 vs.
Match: CS (domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ECD5_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.250e-19
Identity = 41/70 (58.57%), Postives = 48/70 (68.57%), Query Frame = 2 
Query:   59 MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLRLTLPYEVGGDDDDGSCKAVYD 268
            MP+TPRF V+Q D  V V I VP++RV   E H+DGT F+F+CKPYLL LT P   GG  DD   KAVYD
Sbjct:    1 MPSTPRFTVTQDDKMVYVEIHVPYVRVTEMEYHIDGTSFTFWCKPYLLNLTFP---GGVVDDERAKAVYD 67
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig726.15455.1 vs.
Match: CS (domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XW87_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.740e-19
Identity = 45/79 (56.96%), Postives = 51/79 (64.56%), Query Frame = 2 
Query:   59 MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLRLTLPYEVGGDDDDGSCKAVYDPTDESGTIT 295
            MP+TPRFKV+Q    V V I VP++RV   E H+DGT FSF+CKPYLL LT P  V  DD     KAVYD     GTIT
Sbjct:    1 MPSTPRFKVTQDATTVFVEIHVPYVRVSEMEYHIDGTNFSFWCKPYLLNLTFPGAVVDDD---RAKAVYDMNKNHGTIT 76
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig726.15455.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FE71_PYTOL)

HSP 1 Score: 90.5 bits (223), Expect = 3.990e-19
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 2 
Query:   59 MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLRLTLPYEVGGDDDDGSCKAVYDPTDESGTIT 295
            MP+ PRF V+Q    V V + VP++RV   E HV+G  FSFYCKPYLL+L  P+EV  DD     KAVYDP  ++GTIT
Sbjct:    1 MPSIPRFHVTQDAAFVYVHVNVPYVRVSEMEFHVEGLHFSFYCKPYLLKLQFPHEVVDDD---LAKAVYDPNVDNGTIT 76
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig726.15455.1 vs.
Match: CS (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNA5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.140e-19
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 2 
Query:   59 MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLRLTLPYEVGGDDDDGSCKAVYDPTDESGTI 292
            MP  PRF+V+Q    + V + VP +RVG  E  VDGT FSFYCKP+LL+L  P+EV    DD   KAVYDP +E+GTI
Sbjct:    1 MPTIPRFRVTQDAAWIFVHVHVPFVRVGDMEFDVDGTHFSFYCKPFLLKLQFPHEVV---DDELAKAVYDPNEENGTI 75
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig726.15455.1 vs.
Match: CS (domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P2M6_PHYIT)

HSP 1 Score: 82.8 bits (203), Expect = 1.300e-18
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 2 
Query:   59 MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLRLTLPYEVGGDDDDGSCKAVYDPTDESGTI 292
            M ATPRF V+Q    V V + VP +RV   E +VD  +F+F+CKPYLL+L  P+EV    DD   KAVYDP  E+GTI
Sbjct:    1 MVATPRFHVTQDAAWVFVHVHVPFVRVSDMEFYVDNVDFTFFCKPYLLKLHFPHEVV---DDELAKAVYDPNKENGTI 75
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig726.15455.1 vs.
Match: CS (domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GSK1_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.080e-18
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 2 
Query:   59 MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLRLTLPYEVGGDDDDGSCKAVYDPTDESGTI 292
            MP+TPRF+V+Q    V V I+VP++RV   E H+DG +F+FYCKPYLL+L   + +    DD + KAVYDP+ ++GTI
Sbjct:    1 MPSTPRFRVTQNAQFVYVHIRVPYVRVSDMEFHIDGPDFTFYCKPYLLKLHFSHNLV---DDENAKAVYDPSADNGTI 75
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig726.15455.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
SHQ15.510e-4694.94domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
SHQ18.410e-4696.20domain-containing protein n=1 Tax=Ectocarpus silic... [more]
SHQ12.830e-2362.50protein-domain-containing protein n=1 Tax=Tribonem... [more]
Hypothetical2.020e-2158.23protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
CS1.250e-1958.57domain-containing protein n=2 Tax=Aphanomyces asta... [more]
CS3.740e-1956.96domain-containing protein n=1 Tax=Aphanomyces eute... [more]
Uncharacterized3.990e-1954.43protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
CS4.140e-1955.13domain-containing protein n=1 Tax=Pythium brassicu... [more]
CS1.300e-1852.56domain-containing protein n=1 Tax=Phytophthora inf... [more]
CS2.080e-1851.28domain-containing protein n=1 Tax=Albugo candida T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig726contigE_fasciculatus_S2_contig726:21360..22845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score167.2
Seed ortholog evalue3.2e-39
Seed eggNOG ortholog2880.D8LCQ4
Preferred nameSHQ1
Model size296
KEGG koko:K08597,ko:K14764
Hectar predicted targeting categoryother localisation
GOsGO:0000491,GO:0000493,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0016043,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051082,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090069,GO:0090071,GO:0090304,GO:1901360,GO:2000232,GO:2000233
Exons2
EggNOG free text desc.box H/ACA snoRNP assembly
EggNOG OGsKOG3247@1,KOG3247@2759
EC3.4.22.68
Cds size237
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03009,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842390.6233149-CDS-E_fasciculatus_S2_contig726:21359..214501696842390.6233149-CDS-E_fasciculatus_S2_contig726:21359..21450Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig726 21360..21450 -
1696842390.6400409-CDS-E_fasciculatus_S2_contig726:22641..227871696842390.6400409-CDS-E_fasciculatus_S2_contig726:22641..22787Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig726 22642..22787 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842390.654669-UTR-E_fasciculatus_S2_contig726:22787..228451696842390.654669-UTR-E_fasciculatus_S2_contig726:22787..22845Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig726 22788..22845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig726.15455.1prot_E_fasciculatus_S2_contig726.15455.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig726 21360..22787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig726.15455.1

>prot_E_fasciculatus_S2_contig726.15455.1 ID=prot_E_fasciculatus_S2_contig726.15455.1|Name=mRNA_E_fasciculatus_S2_contig726.15455.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=79bp
MPATPRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLRL
TLPYEVGGDDDDGSCKAVYDPTDESGTIT
back to top

mRNA from alignment at E_fasciculatus_S2_contig726:21360..22845-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig726.15455.1 ID=mRNA_E_fasciculatus_S2_contig726.15455.1|Name=mRNA_E_fasciculatus_S2_contig726.15455.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1486bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig726:21360..22845- (Ectocarpus fasciculatus EfasUO2)
TTGAAGATTAGTGGTGTGTGTTGTGTGTTGGCAAAGGGAGCGACGAGAAC
ACGAGAACATGCCTGCGACGCCGCGCTTTAAGGTGTCCCAGACGGACCTT
GCCGTGGTGGTGTGCATCAAGGTGCCGCACATTCGCGTAGGGAGCGCGGA
GACGCACGTGGATGGGACGGAGTTCTCCTTCTACTGCAAGCCCTACCTTC
TCCGGTGAGTAGGTGGTAGCTGGGCCCCTGATATAGACCGCTGTTTGCCT
CTCCGTCCATACTATGCCGCTGGTCGTTGGCGTGTGCGGTTCTGCTGGCC
GCTGACTGGTGAGATGGCGCCGCTGCATTTGACCATTTCCGACTGGTAGC
CCACACAACAGCAGTCCAATTTTTTTCCTGCTCCGCACTATCAATATGCG
TACAGCAGCAGACTACTCCTGCTGTGCATGAACCATGAACCCATACCTGC
ACCCGGGGCAGAAAAAGAAAACCATGAACACATTTGGACCTTCCCATTAT
AAATAACCCGGGAACAAATATGTGCCTCGCCGTGTGGGGTCCCCTGATGT
GTTCGGGCGGTAGGTTGCTGCAGGAGACCATGCATGCGTCACGAACAATT
TCTAAGAGCACCCATTTCATTTCGTCCCCAGGCCTCCCCCGTCCGTGGCG
TCCATTGTTGTAGCAGATCGTCGTCACTCCCCTCGCTTCTCCTGTAGTTG
TTCCTGCTTTGTCTGCTTCCACTCGCCATGTTTGAAACTTATCTAGTCTA
TTATGTACTCGCCTGTTTTTACCCTCGGGCCTCGAAAACCAACCTCCACG
TCAACGCACGGCAGCGCATCGAATAGTTTCGGAATGTCTCCGAAACGGTA
TCCCCCGCCCCGCATCTTTCGCAACCCTTGCGAGCGGTGAGAAAACGAGA
CCCGGTCGGTATTTCCACCATGTTTTGTGGCTAGGGACGGGTTATCTTCC
ACCACTATAATATCACACATCTCACCGCGATGCCACCGAAAGCGACAATG
GAGCATCATCCTCGAAGGACATTGGGGAGGGGGAACCTTTCGCAAAGGTC
ACCTTTTCCTTCGACATGTTGGTGCTCGGCTCTCGAAGGCGTGAGGATGG
GGTTTGCGTCGGTGAATCGCCCTGGGCCCCAACGGAAACATGAGGCTCAT
GGATCCGCCACAAGCGCCAAACACCTAACAGGGACGAAGCATCTTCTTCA
AGACAATGGTGGAACACAGTAAATCTAACGTGGACGTTGTCGTGTCTCTT
CTTCGGCCAATAGCGCTACGTAACCGTCACCTAACCCGTGGCAAGAAACT
ACCGGTAGTCCGCAGTGGTGTACAGCAGTAGACATGAAAAATCGAACCCC
CCTGCCACCTTGCTTGCCCCCGCACGTGCCTTCCGCCGTCCGCAGGCTGA
CGCTCCCGTACGAGGTCGGGGGGGACGACGACGACGGCAGCTGCAAGGCG
GTGTACGACCCGACCGACGAGAGCGGCACCATCACC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig726:21360..22845-

>mRNA_E_fasciculatus_S2_contig726.15455.1 ID=mRNA_E_fasciculatus_S2_contig726.15455.1|Name=mRNA_E_fasciculatus_S2_contig726.15455.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=237bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig726:21360..22845- (Ectocarpus fasciculatus EfasUO2)
ATGCCTGCGACGCCGCGCTTTAAGGTGTCCCAGACGGACCTTGCCGTGGT
GGTGTGCATCAAGGTGCCGCACATTCGCGTAGGGAGCGCGGAGACGCACG
TGGATGGGACGGAGTTCTCCTTCTACTGCAAGCCCTACCTTCTCCGGCTG
ACGCTCCCGTACGAGGTCGGGGGGGACGACGACGACGGCAGCTGCAAGGC
GGTGTACGACCCGACCGACGAGAGCGGCACCATCACC
back to top