mRNA_E_fasciculatus_S2_contig7254.15447.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7254.15447.1 vs.
Match: Similar (to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI) HSP 1 Score: 768 bits (1984), Expect = 3.580e-249 Identity = 410/451 (90.91%), Postives = 413/451 (91.57%), Query Frame = 1
Query: 1 DLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCRLSRRQASLYEEFMARSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPFVLPPLDLGVGTQVLRSRSPSSSSSWLSPCGFPARFGGVFFEGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPDGGVSRRLIAPLWAHDLRDGLPGLDVLSTELLSRRATPAEDVLKMPSKLPLCIPDPTQVDKSLNLMPQVLYRLTRLRKTLRGQARERRRLMAAISLNRCGLLPGGGGGGAGMEEAHPLNWRLVRTARLLYGHPTLEAAQAAREGDARVRFWCPLAMMASVKGLRERCEEMHPLVERFCFLVPKVMAWAPNVVGTPDLASSLTFATARERLRREVLRRGGLSLIYPAQIRQRICFPDRRLVQYDAGKLQVLAGLLRSRKQGGHKCLIFTQAS 1353
DLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCRLSRRQASLYEEFMARSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPFVLPPLDLGVGT+VLRSRS SSSSSW+ PCGFP RFGGV FEG AT XXXXXXXXXXXX RSPDGGVSR LIAPLWAHDLRDGLPGLDVLSTELLSRRATPAEDVLKMPSKLPLCIPDPTQVDKSLNLMPQVLYRLTRLRKTLRGQARERRRLMAAISLNRCGLLPGGGGGGAGMEEAHPLNWRLVRTARLLYGHPTLEAAQAAREGDARVRFWCPLAMM SVKGLRERCEEMH LVERFCFLVPKVMAWAPNVVGTPDLASSL FAT RERLRREV+RRGGLSLIYPAQIRQRICFPDRRLVQYDAGKLQVLAGLLRSRKQGGHKCLIFTQ S
Sbjct: 1271 DLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCRLSRRQASLYEEFMARSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPFVLPPLDLGVGTRVLRSRS-SSSSSWMPPCGFPTRFGGVLFEGTATAATAAXXXXXXXXXXXXGKLGSGEDGSGEKAGAGVGSR-RSPDGGVSRSLIAPLWAHDLRDGLPGLDVLSTELLSRRATPAEDVLKMPSKLPLCIPDPTQVDKSLNLMPQVLYRLTRLRKTLRGQARERRRLMAAISLNRCGLLPGGGGGGAGMEEAHPLNWRLVRTARLLYGHPTLEAAQAAREGDARVRFWCPLAMMGSVKGLRERCEEMHTLVERFCFLVPKVMAWAPNVVGTPDLASSLAFATGRERLRREVVRRGGLSLIYPAQIRQRICFPDRRLVQYDAGKLQVLAGLLRSRKQGGHKCLIFTQMS 1719
BLAST of mRNA_E_fasciculatus_S2_contig7254.15447.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE) HSP 1 Score: 588 bits (1517), Expect = 1.220e-183 Identity = 323/450 (71.78%), Postives = 326/450 (72.44%), Query Frame = 1
Query: 1 DLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCRLSRRQASLYEEFMARSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPFVLPPLDLGVGTQVLRSRSPSSSSSWLSPCGFPARFGGVFFEGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPDGGVSRRLIAPLWAHDLRDGLPGLDVLSTELLSRRATPAEDVLKMPSKLPLCIPDPTQVDKSLNLMPQVLYRLTRLRKTLRGQARERRRLMAAISLNRCGLLPGGGGGGAGMEEAHPLNWRLVRTARLLYGHPTLEAAQAAREGDARVRFWCPLAMMASVKGLRERCEEMHPLVERFCFLVPKVMAWAPNVVGTPDLASSLTFATARERLRREVLRRGGLSLIYPAQIRQRICFPDRRLVQYDAGKLQVLAGLLRSRKQGGHKCLIFTQA 1350
DLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCRLSRRQASLYEEFMARSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPFVLPPLDLGVGTQVLRSRS SSSSSW+ PCGFP RFGGV FEG T RSPDGGVSR LIAPLWAHDLRD LPGLDVLSTELLSRRATPAEDVLKMPSKLPLCIPDPT TA + P EAAQAAREGDARVRFWCPLAMMASVKGLRERCEEMHP VERFCFLVPKVMAWAPNVVGTPDLASSLTFA RERLRREV+RRGGLSLIYPAQIRQRICFPDRRLVQYDAGKLQVLAGLLRSRKQGGHKCLIFTQA
Sbjct: 1671 DLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCRLSRRQASLYEEFMARSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPFVLPPLDLGVGTQVLRSRSSSSSSSWIPPCGFPTRFGGVSFEGTQTAAADGKLGSGEDGGGENARAGVGSR--------------RSPDGGVSRSLIAPLWAHDLRDDLPGLDVLSTELLSRRATPAEDVLKMPSKLPLCIPDPT-------------------------------------------------------------------TAHEIAQDP--EAAQAAREGDARVRFWCPLAMMASVKGLRERCEEMHPFVERFCFLVPKVMAWAPNVVGTPDLASSLTFAKGRERLRREVVRRGGLSLIYPAQIRQRICFPDRRLVQYDAGKLQVLAGLLRSRKQGGHKCLIFTQA 2037
BLAST of mRNA_E_fasciculatus_S2_contig7254.15447.1 vs.
Match: Uncharacterized (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1C0_9STRA) HSP 1 Score: 215 bits (548), Expect = 2.200e-55 Identity = 177/474 (37.34%), Postives = 222/474 (46.84%), Query Frame = 1
Query: 4 LIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCRLSRRQASLYEEFMARSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPFVLPPLDLGVGTQVLRSRSPSSSSSWLSPCGFPARFGGVFFEGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPDGGVSRRLIAPLWAHDLRDGLPGLDVLSTELLSRRATPAEDVLKMPSKLPLCIPD------PTQVDKSLNLM-PQVLYRLTRLRKTLRGQARERRRLMAAISLNRCGLL---PGG----GGGGAGMEEAHPLNWRLVRTA----------RLLYGHPTLEAAQAAREGDARVRFWCPLAMMASVKGLRERCEEMHPLVERFCFLVPKVMAWAPNVVGTPDLASSLTFAT--ARERLRREVLRRGGLSLIYPAQIRQRICFPDRRLVQYDAGKLQVLAGLLRSRKQGGHKCLIFTQ 1347
LIRRLH+++RPFLLRRLKKDVEKQLPGK EHVV+C LSRRQA LYEEFMARSSTRAAL GGNFMGMMN+LMQLRKVCNHPDLFEAR I SP+ + PL L V L SPSS + +SP R+P+ + P W + S L P ED + L L P + SL P V L L L Q + LMA ++ RCG L P G G A HP + + R L+ A A + P A++ ++K ++R ++ PL+ERF +VP+V + P ++ + SL A LR +LR +PA +RQ + FPD+ LVQ+DAGKLQ LA LL S K+G H+ LIFTQ
Sbjct: 602 LIRRLHTIMRPFLLRRLKKDVEKQLPGKFEHVVLCPLSRRQAHLYEEFMARSSTRAALAGGNFMGMMNVLMQLRKVCNHPDLFEARPIRSPYAMDPLALPVPALALDLLSPSSPLARVSPS-------------------------------------------------LLHFLWRAPE-------LPPAW------------LASPSSLFVPPEPQEDAHVLHRALSLAAAPSQLHAPPPSLQSSLGASDPAVAAHLAALSAALARQRGLQHALMARLNAWRCGGLFFGPAGEREEGASDADSIRFHPPSSPSSPSPSGYGLGPSLRRSLHAGMCPTALALAARSQPSLLLQTPQALLHALKLDQDRARDLGPLIERFTCVVPRVRSSFPILLSSSARPPSLPPALHPPLRHLRTRLLRP-----YHPAALRQSLLFPDKWLVQFDAGKLQTLARLLLSLKRGHHRVLIFTQ 1002
BLAST of mRNA_E_fasciculatus_S2_contig7254.15447.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX30_HETAK) HSP 1 Score: 185 bits (469), Expect = 5.930e-51 Identity = 86/96 (89.58%), Postives = 93/96 (96.88%), Query Frame = 2
Query: 1706 QMSRMLDVLEEFLTLHGHTYVRLDGSTGVEKRQRLMDRFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVH 1993
QMS+MLDVLEEFLTLHGH Y+RLDGSTGVE+RQRLMDRFN D ++FCFILSTRSGGLGINLTGADTV+FYDSDWNPAMDAQAQDRAHRIGQTR+VH
Sbjct: 64 QMSKMLDVLEEFLTLHGHVYLRLDGSTGVERRQRLMDRFNADTRVFCFILSTRSGGLGINLTGADTVVFYDSDWNPAMDAQAQDRAHRIGQTRDVH 159
BLAST of mRNA_E_fasciculatus_S2_contig7254.15447.1 vs.
Match: Predicted (protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYZ5_PHATC) HSP 1 Score: 182 bits (461), Expect = 6.720e-51 Identity = 85/96 (88.54%), Postives = 93/96 (96.88%), Query Frame = 2
Query: 1706 QMSRMLDVLEEFLTLHGHTYVRLDGSTGVEKRQRLMDRFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVH 1993
QMS+MLD+LE FL L+GHTY+RLDGSTGV++RQRLMDRFN DPKLFCFILSTRSGGLGINLTGAD+VIFYDSDWNPAMDAQAQDRAHRIGQTR+VH
Sbjct: 7 QMSKMLDILEAFLNLNGHTYLRLDGSTGVDRRQRLMDRFNNDPKLFCFILSTRSGGLGINLTGADSVIFYDSDWNPAMDAQAQDRAHRIGQTRDVH 102
BLAST of mRNA_E_fasciculatus_S2_contig7254.15447.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7E9_9STRA) HSP 1 Score: 183 bits (464), Expect = 2.670e-49 Identity = 93/129 (72.09%), Postives = 104/129 (80.62%), Query Frame = 2
Query: 1607 EVGRLAFPLDLGR*LFLN*CSCLIVVVSFFCSKQMSRMLDVLEEFLTLHGHTYVRLDGSTGVEKRQRLMDRFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVH 1993
+ G+L L R L+L CLI QMS+ML++LEEFL ++ +TY+RLDGSTGVEKRQ+LMDRFN D KLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVH
Sbjct: 42 DCGKLQTLARLLRRLYLGGHKCLIFT-------QMSKMLNILEEFLNIYNYTYLRLDGSTGVEKRQKLMDRFNSDEKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVH 163
BLAST of mRNA_E_fasciculatus_S2_contig7254.15447.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGU8_9STRA) HSP 1 Score: 194 bits (493), Expect = 2.510e-48 Identity = 156/453 (34.44%), Postives = 209/453 (46.14%), Query Frame = 1
Query: 4 LIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCRLSRRQASLYEEFMARSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPFVLPPLDLGVGTQVLRSRSPSSSSSWLSPCGFPARFGGVFFEGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPDGGVSRRLIAPLWAHDLRDGLPGLDVLSTELLSRRATPAEDVLKMPSKLPLCIPDPTQVDKSLNLMPQVLYRLTRLRKTLRGQARERRRLMAAISLNRCGLLPGGGGGGAGMEEAHPLNWRLVRTARLLYG---HPTLEAAQAAREGDARVRFWCPLAMMASVKGLRERCEEMHPLVERFCFLVPKVMAWAPNVVGTPDLASSLTFATARERLRREVLRRGGLSLIYPAQIRQRICFPDRRLVQYDAGKLQVLAGLLRSRKQGGHKCLIFTQAS 1353
LIRRLHS++RPFLLRRLKKDV KQLP K EH+V C LSRRQ LYE+F++RSSTRAAL GGNFMGMMN+LMQLRKVCNHPDLFEAR I +PFV+ P+ L +LR R P G+F ++T RRL P+ + LD ++ +++ + L P L + L R ++ RRR M I+ +R + + R+ R+A L G + +A +A R + V P ++ +V+ ER + L++ F F+ PKV A +VG P + + LR+++ R Y R ++ FPDR+LVQ+D GKLQ LA LLR GHKCLIFTQ S
Sbjct: 922 LIRRLHSIMRPFLLRRLKKDVAKQLPKKFEHLVYCDLSRRQQFLYEDFLSRSSTRAALTGGNFMGMMNVLMQLRKVCNHPDLFEARPIRAPFVMQPVCLKYPQMMLRLRCP-----------------GMFTFVSSTAAWHPQLSE------------------------------------AERRLRLPIDLAPMGTHRTALDEKNSGAIAQFVEVQDVAL------------PRAASAQLRQAGTIRDAFEALLAKRRSESLRRRREMYYINESRREI---------------SFHDRMKRSASFLEGVYLSLSEKAGEARRSPQSYVDV--PSLLIKAVQQPSERLGLLESLLKSFAFVTPKVTARTAQLVGVPSVDERVREEFPNLSLRKQIADRSAP--FYEVSKRLQMYFPDRKLVQFDCGKLQSLAELLRRLHNEGHKCLIFTQMS 1290
BLAST of mRNA_E_fasciculatus_S2_contig7254.15447.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC2_9STRA) HSP 1 Score: 182 bits (462), Expect = 2.540e-48 Identity = 85/96 (88.54%), Postives = 92/96 (95.83%), Query Frame = 2
Query: 1706 QMSRMLDVLEEFLTLHGHTYVRLDGSTGVEKRQRLMDRFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVH 1993
QM+RMLDVLE FL +HGHTYVRLDGSTGVE+RQRLMDRFN D +LFCFILSTRSGGLGINLTGADTVIF+DSDWNPAMD+QAQDRAHRIGQTR+VH
Sbjct: 84 QMTRMLDVLERFLAMHGHTYVRLDGSTGVERRQRLMDRFNTDDRLFCFILSTRSGGLGINLTGADTVIFFDSDWNPAMDSQAQDRAHRIGQTRDVH 179
BLAST of mRNA_E_fasciculatus_S2_contig7254.15447.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NZ45_9STRA) HSP 1 Score: 193 bits (490), Expect = 4.900e-48 Identity = 158/463 (34.13%), Postives = 218/463 (47.08%), Query Frame = 1
Query: 1 DLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCRLSRRQASLYEEFMARSSTRAAL-QGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPFVLPPLDLGVGTQVLRSRSPSSSSSWLSPCGFPARFGGVFFEGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPDGGVSRRLIAPLWAHDLRDGLPGLDVL-STELLSRRAT----PAEDVLKMPSKLPLCIPDPTQVDKSLNLMPQVLYRLTRLRKTLRGQARERRRLMAAISLNRCGLLPGGGGGGAGMEEAHPLNWRLVRTARL-LYGHPTLEAAQAAREGDARVRFWCPLAMMASVKGLRERCEEMHPLVERFCFLVPKVMAWAPNVVGTPDLASSLTFATARE-RLRREVLRRGGLSLIYPAQIRQRI----CFPDRRLVQYDAGKLQVLAGLLRSRKQGGHKCLIFTQAS 1353
DLI RLH ++RPF+LRRLKKDVE+Q+PGK EH+V C LSRRQ LYEEFMARSSTR AL +GGNFM MMN+LMQLRKVCNHPDLFE R I +PF + PL+ V + +P P +SR LI P+W+ + GLP ++ E+LS + T P+ +L + K C+ +P + DK N P + L + + + R L +I+ RC A P + RL + + LE +A AR P ++ + ++R E+ +++RF F VP + P ++ + A RE RL RE+ R + + +R FPD++L+Q+DAGKLQ LA LLR+ KQ GH+ LIFTQ S
Sbjct: 322 DLIGRLHGIIRPFVLRRLKKDVEQQMPGKFEHIVKCNLSRRQMFLYEEFMARSSTRTALTKGGNFMAMMNVLMQLRKVCNHPDLFEPRSIVTPFTMEPLNFRTAACVTNATE------------YP------------------------------------------------------PLQEISRSLICPIWSAGV--GLPTIEATYHDEILSSQLTQLQVPSRKLLDVDDK---CMMEP-KPDKDDN--PGLASILATIWDNEKAELVSRAHLQGSINATRC------------QSPAFPYSIRLQKAIEMDSLPLERLEFEEAPSADIART----PKELLLMRRSQQQRAEDFDEIIKRFVFCVPSANSKKPELISCRVIHD----AVLRESRLSRELSR--PIEEYFRPYLRSNARLTSFFPDKKLIQFDAGKLQTLARLLRNLKQDGHRVLIFTQMS 688
BLAST of mRNA_E_fasciculatus_S2_contig7254.15447.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1US36_9STRA) HSP 1 Score: 179 bits (455), Expect = 1.910e-47 Identity = 83/96 (86.46%), Postives = 92/96 (95.83%), Query Frame = 2
Query: 1706 QMSRMLDVLEEFLTLHGHTYVRLDGSTGVEKRQRLMDRFNLDPKLFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTREVH 1993
QMS+MLDVLE FL ++GHTY+RLDG TGV++RQRLMDRFN+D K+FCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTR+VH
Sbjct: 13 QMSKMLDVLEAFLNMNGHTYLRLDGGTGVDRRQRLMDRFNMDEKIFCFILSTRSGGLGINLTGADTVIFYDSDWNPAMDAQAQDRAHRIGQTRDVH 108 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7254.15447.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7254.15447.1 >prot_E_fasciculatus_S2_contig7254.15447.1 ID=prot_E_fasciculatus_S2_contig7254.15447.1|Name=mRNA_E_fasciculatus_S2_contig7254.15447.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=439bp MCRLSRRQASLYEEFMARSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFback to top mRNA from alignment at E_fasciculatus_S2_contig7254:3..7731+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7254.15447.1 ID=mRNA_E_fasciculatus_S2_contig7254.15447.1|Name=mRNA_E_fasciculatus_S2_contig7254.15447.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=7729bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7254:3..7731+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7254:3..7731+ >mRNA_E_fasciculatus_S2_contig7254.15447.1 ID=mRNA_E_fasciculatus_S2_contig7254.15447.1|Name=mRNA_E_fasciculatus_S2_contig7254.15447.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1317bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7254:3..7731+ (Ectocarpus fasciculatus EfasUO2)back to top |