mRNA_E_fasciculatus_S2_contig7246.15438.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7246.15438.1
Unique NamemRNA_E_fasciculatus_S2_contig7246.15438.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7246.15438.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD6_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 1.100e-53
Identity = 151/184 (82.07%), Postives = 159/184 (86.41%), Query Frame = 3 
Query:  414 DSEATRTPASHDQGFDHNPFGEQVPATTGEGYTDRSASPPSRRRGRVGDRLDGNEGEQXXXXXXXXXXXXXXXXXXXX----GYQGGSGYEEERQARVGEDVDGRSNGRRAPSND-DGTREQYGDPGWEQEERGAEGGGAGGAEEEG--DAQQRDSELPTQFPGVREAFEXXXXXXXXXVGNDD 944
            DSEATRTPASHDQGFDHNPFGEQ+PAT GEGYTDRSAS PSRRRGRV DRL GNEGEQXXXXXXXXXXXXXXXXXXXX    GY+ G GYEEERQAR+G   DGRSNGRR  S+D D TREQYGDPGWEQEERG + GG GG ++    DAQQRDSELPTQFPGVREAFEXXXXXXXXXVGND+
Sbjct:   42 DSEATRTPASHDQGFDHNPFGEQLPATAGEGYTDRSAS-PSRRRGRVHDRLGGNEGEQXXXXXXXXXXXXXXXXXXXXXXXDGYRVG-GYEEERQARLG---DGRSNGRRRASSDHDLTREQYGDPGWEQEERGVQRGGLGGPDDXXXXDAQQRDSELPTQFPGVREAFEXXXXXXXXXVGNDE 220
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BLAST of mRNA_E_fasciculatus_S2_contig7246.15438.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT46_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 2.730e-35
Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:    1 RFCGTDDEEVELVFSLKEIKVRMWMGVGALLHFSETTEAQTLEMLFREGGDPLLFQSHSKSFAAELIMATMEPKVIRKEP 240
            RFCGTDDEEVELVFSLKEIKVRM +G+ ALLHFSETTEAQTLEMLFREGGDPLLFQSHSKSFAAELIMATMEPKVIRKEP
Sbjct:  224 RFCGTDDEEVELVFSLKEIKVRMLVGM-ALLHFSETTEAQTLEMLFREGGDPLLFQSHSKSFAAELIMATMEPKVIRKEP 302
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7246.15438.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.100e-5382.07protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.730e-3595.00protein (Fragment) n=1 Tax=Ectocarpus siliculosus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7246contigE_fasciculatus_S2_contig7246:500..3071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score104.8
Seed ortholog evalue8.4e-20
Seed eggNOG ortholog2880.D8LT46
Preferred nameRAD9B
Model size1617
KEGG koko:K10994,ko:K10995
KEGG Pathwayko04218,map04218
Hectar predicted targeting categorysignal peptide
GOsGO:0000018,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000723,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007346,GO:0008047,GO:0008150,GO:0008152,GO:0008408,GO:0009314,GO:0009628,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010212,GO:0010389,GO:0010562,GO:0010564,GO:0010569,GO:0010604,GO:0010605,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0010948,GO:0010972,GO:0012505,GO:0016020,GO:0016043,GO:0016787,GO:0016788,GO:0017124,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0022402,GO:0023051,GO:0023056,GO:0030234,GO:0030295,GO:0030896,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031399,GO:0031401,GO:0031570,GO:0031573,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032147,GO:0032200,GO:0032268,GO:0032270,GO:0032991,GO:0033314,GO:0033554,GO:0033674,GO:0034641,GO:0035861,GO:0042325,GO:0042327,GO:0042592,GO:0042826,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045738,GO:0045786,GO:0045859,GO:0045860,GO:0045910,GO:0045930,GO:0045934,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090734,GO:0098772,GO:0104004,GO:1901360,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902229,GO:1902231,GO:1902531,GO:1902533,GO:1902749,GO:1902750,GO:1903047,GO:1990421,GO:2000042,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001022,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Exons3
EggNOG free text desc.intra-S DNA damage checkpoint
EggNOG OGsKOG2810@1,KOG2810@2759
Ec32 ortholog descriptionRad9/Ddc1
Ec32 orthologEc-08_004110.1
EC3.1.11.2
Cds size1035
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842388.866898-UTR-E_fasciculatus_S2_contig7246:499..5651696842388.866898-UTR-E_fasciculatus_S2_contig7246:499..565Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7246 500..565 +
1696842388.9103422-UTR-E_fasciculatus_S2_contig7246:2555..30711696842388.9103422-UTR-E_fasciculatus_S2_contig7246:2555..3071Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7246 2556..3071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842388.8780088-CDS-E_fasciculatus_S2_contig7246:565..5831696842388.8780088-CDS-E_fasciculatus_S2_contig7246:565..583Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7246 566..583 +
1696842388.8899786-CDS-E_fasciculatus_S2_contig7246:1044..14121696842388.8899786-CDS-E_fasciculatus_S2_contig7246:1044..1412Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7246 1045..1412 +
1696842388.9006817-CDS-E_fasciculatus_S2_contig7246:1906..25551696842388.9006817-CDS-E_fasciculatus_S2_contig7246:1906..2555Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7246 1907..2555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7246.15438.1prot_E_fasciculatus_S2_contig7246.15438.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7246 566..2555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7246.15438.1

>prot_E_fasciculatus_S2_contig7246.15438.1 ID=prot_E_fasciculatus_S2_contig7246.15438.1|Name=mRNA_E_fasciculatus_S2_contig7246.15438.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=345bp
MWMGVGALLHFSETTEAQTLEMLFREGGDPLLFQSHSKSFAAELIMATME
PKVIRKEPPPTAAVAAGGAKRDPGTAAGSGGGGVTRVRATRARSRMGGGG
KGTRGIGAAAGGGEARTRRPRGRRLRTIRALTTILSGNKCLQRQARATPT
AQLLPLRDAAAVLATGLTATKANSSSVGRTAARTKKTRAAAATTAIRVAA
AMRRSGRHESGKTSMGEATGGGRPATTMEHESSTATRDGNRRSGGRKAEV
PGGRRKRGMRSSAIRSCRPNSRGCGKRSSRSCRHSSPALAMTMTRTVVVR
AGAAGAARLGEGGVGRLMAMRRTGGPCKGAKEEGGSCTRKRRNR*
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mRNA from alignment at E_fasciculatus_S2_contig7246:500..3071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7246.15438.1 ID=mRNA_E_fasciculatus_S2_contig7246.15438.1|Name=mRNA_E_fasciculatus_S2_contig7246.15438.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2572bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7246:500..3071+ (Ectocarpus fasciculatus EfasUO2)
AGGTTCTGCGGCACAGACGATGAAGAGGTGGAGCTCGTGTTCAGTCTCAA
GGAGATTAAGGTCAGAATGTGGATGGGGGTGGGGGTGGGGGTACGCAGGG
GAGTACTGCGGGTGTTGGAGGGGGGAACTCGGGGGGGTTCAGCAGGGTTG
ATCGGTGTTTTTGAGACCATTTGGACAAAGGGTTTCGGTTCAGGTCGTCC
TTGTGTATGGGAATGCTCCAAGACCAACACTCGAAACCCAAGAGCTGCAC
ACAGCACACGAGGCCGCCACACCCAAGCATTCCGTGTCCGCTAAACTTGA
ATACTGCTCTTGCCTATTGGCAGCAGTTGATCCGCTATACCCTGAAAAGT
GCCGGATGCCCGCCGGAATGTGCCCGGCCGACCAATAACCCCTTGGCACT
TCGCGGCACTACTCAGAGACCACTACCTATATTTCAACCCGCACCACTCG
AATCAAAAGTTGTGAACGCCCCCTTTCGTATCCGATTTTTTGAACGTCTC
GGCTGAGATGTCTCTCTTTTCTTTCTCGCGGCGCTTCTCCCTAAGGCCCT
CCTGCACTTCAGCGAGACCACGGAGGCGCAGACCCTGGAGATGCTCTTCC
GGGAGGGGGGGGACCCTCTCCTGTTCCAGAGCCACTCCAAGTCCTTCGCC
GCGGAGCTGATCATGGCCACGATGGAGCCCAAGGTCATCCGCAAGGAGCC
ACCGCCGACAGCGGCGGTAGCGGCAGGTGGCGCGAAGAGGGACCCGGGGA
CGGCGGCGGGGTCTGGGGGGGGGGGGGTTACCCGCGTCAGGGCGACCAGA
GCCAGGAGTCGGATGGGCGGTGGAGGGAAGGGGACCCGGGGCATCGGGGC
GGCGGCGGGGGGAGGGGAAGCCAGGACTCGGAGGCCACGAGGACGCCGGC
TTCGCACGATCAGGTGAAGGCAGCTCTTAGCGAGCGGTGTCTCGGTGTGT
CGGGTTTTGTTCCCTTTGCGTACGGTGTAGTTTGCGAGGAGGTGTGTTTG
ATGCGCGTATCGGCGGGGGTCGGTGTGTCCTTTCCTTCTGAAGTCGTTTG
TGATGCATTCCCGATTGAAGTACGCCGTGCATGTAACAACGGCGACCCTT
TTTTTTTTCTCGCAAGCGTTCCTGTGTCCGCACCCCCCCCCCTACATTTT
TGTTGTTTGCCGTTTCCTATTGTAGGAGTGATGGTACTCCAAGCCCGGTC
TATTGAGTTTGACAGGCTGAGGACTTGTTGACCAGACGAACACCATGCCC
CAAAACCAACGCCTCTCATCCTCGAATGGCTGAGGAGGGCCTGCCTCCTG
TACGTGGCTGGCACACACGAACTCAAACCGTAGCCGTGACGGATTCATCG
GTGGCCTTTACATTGACGAGCCCCCTCCCTCCCGCCCCTTCTACATGCAC
TTTGCAGGGCTTTGACCACAATCCTTTCGGGGAACAAGTGCCTGCAACGA
CAGGCGAGGGCTACACCGACCGCTCAGCTTCTCCCCCTTCGCGACGCCGC
GGCCGTGTTGGCGACCGGCTTGACGGCAACGAAGGCGAACAGCAGCAGCG
TCGGGAGGACGGCGGCTCGTACGAAGAAGACCAGGGCGGCGGCGGCGACG
ACGGCTATCAGGGTGGCAGCGGCTATGAGGAGGAGCGGCAGGCACGAGTC
GGGGAAGACGTCGATGGGAGAAGCAACGGGCGGCGGGCGCCCAGCAACGA
CGATGGAACACGAGAGCAGTACGGCGACCCGGGATGGGAACAGGAGGAGC
GGGGGGCGGAAGGCGGAGGTGCCGGGGGGGCGGAGGAAGAGGGGGATGCG
CAGCAGCGCGATTCGGAGCTGCCGACCCAATTCCCGGGGGTGCGGGAAGC
GTTCGAGTCGGAGCTGCCGACACAGTTCCCCGGCGTTGGCAATGACGATG
ACGAGGACGGTAGTGGTCCGGGCGGGGGCGGCGGGGGCGGCAAGGCTAGG
AGAGGGGGGGGTCGGGAGGTTGATGGCGATGAGGAGGACGGGGGGCCCGT
GCAAGGGAGCAAAAGAAGAAGGAGGGTCGTGCACGAGGAAGAGGAGGAAT
AGGTGACGGGGTAGTAGCTTCGCCTTGGCGAGTGAACCGCTAAAGGCGTG
TGTATGCATACATCCCAGGAAGTATAGATAGATAGCACGGTGTAGAGGTT
GATATCGGTGGGGGTCCGGAAGGACGAGGGCGCTGCTGTGTACGCGCGTC
GCGCACGCATGCGTTGTTGTAGATCTATCTGTCTATCCTTGCACCCGTTG
CGGGAGGACCACCGTGTTAGTGTTTTTATTTTTTGCACAGGCGTGAGGTA
CCCGCGTTCGATTGAGTGGTAGTAGCGCCAGCGTGTGCGTGCCGCAGCAA
GGGTTGCAGGTGCTTGTGTCGTGTGAACAGCAGATGATGACGATGCCAAG
TTTTCTTGTAGCAGTAGCAGTGCCGGTGCTGCGGTCTACAGCAGTGCAGT
AGGCTTGAAGGATATGACGAGGGCGATAGAGGCCGGGAAGAGGCGACAAA
GAAATTCTGCAACAACCATGAGCATTGGCGGGCGCGCCCGCCGAGCGGCC
CAAATGGCGCGACGATAGAAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7246:500..3071+

>mRNA_E_fasciculatus_S2_contig7246.15438.1 ID=mRNA_E_fasciculatus_S2_contig7246.15438.1|Name=mRNA_E_fasciculatus_S2_contig7246.15438.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1035bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7246:500..3071+ (Ectocarpus fasciculatus EfasUO2)
ATGTGGATGGGGGTGGGGGCCCTCCTGCACTTCAGCGAGACCACGGAGGC
GCAGACCCTGGAGATGCTCTTCCGGGAGGGGGGGGACCCTCTCCTGTTCC
AGAGCCACTCCAAGTCCTTCGCCGCGGAGCTGATCATGGCCACGATGGAG
CCCAAGGTCATCCGCAAGGAGCCACCGCCGACAGCGGCGGTAGCGGCAGG
TGGCGCGAAGAGGGACCCGGGGACGGCGGCGGGGTCTGGGGGGGGGGGGG
TTACCCGCGTCAGGGCGACCAGAGCCAGGAGTCGGATGGGCGGTGGAGGG
AAGGGGACCCGGGGCATCGGGGCGGCGGCGGGGGGAGGGGAAGCCAGGAC
TCGGAGGCCACGAGGACGCCGGCTTCGCACGATCAGGGCTTTGACCACAA
TCCTTTCGGGGAACAAGTGCCTGCAACGACAGGCGAGGGCTACACCGACC
GCTCAGCTTCTCCCCCTTCGCGACGCCGCGGCCGTGTTGGCGACCGGCTT
GACGGCAACGAAGGCGAACAGCAGCAGCGTCGGGAGGACGGCGGCTCGTA
CGAAGAAGACCAGGGCGGCGGCGGCGACGACGGCTATCAGGGTGGCAGCG
GCTATGAGGAGGAGCGGCAGGCACGAGTCGGGGAAGACGTCGATGGGAGA
AGCAACGGGCGGCGGGCGCCCAGCAACGACGATGGAACACGAGAGCAGTA
CGGCGACCCGGGATGGGAACAGGAGGAGCGGGGGGCGGAAGGCGGAGGTG
CCGGGGGGGCGGAGGAAGAGGGGGATGCGCAGCAGCGCGATTCGGAGCTG
CCGACCCAATTCCCGGGGGTGCGGGAAGCGTTCGAGTCGGAGCTGCCGAC
ACAGTTCCCCGGCGTTGGCAATGACGATGACGAGGACGGTAGTGGTCCGG
GCGGGGGCGGCGGGGGCGGCAAGGCTAGGAGAGGGGGGGGTCGGGAGGTT
GATGGCGATGAGGAGGACGGGGGGCCCGTGCAAGGGAGCAAAAGAAGAAG
GAGGGTCGTGCACGAGGAAGAGGAGGAATAGGTGA
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