mRNA_E_fasciculatus_S2_contig7226.15406.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7226.15406.1
Unique NamemRNA_E_fasciculatus_S2_contig7226.15406.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7226.15406.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z7_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 5.190e-47
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 1
Query:    7 IFKLVKEEATPEQWKQWLRAPLEHAAARGNLDLFTRLMDAGADGSAGWRGCHGRTLLGAAACGPDDQMVRALLEAGATDDVN 252
            IFKLV+EEATPEQWKQWLR PLEHAAA+GNLDLFTRLMDAGADG +GWRGC+GRTLLGAAACG  DQMVRALLEAGATDDVN
Sbjct:    4 IFKLVQEEATPEQWKQWLRVPLEHAAAKGNLDLFTRLMDAGADGCSGWRGCYGRTLLGAAACGDGDQMVRALLEAGATDDVN 85          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15406.1 vs.
Match: Ankyrin (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE2_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 1.560e-43
Identity = 74/85 (87.06%), Postives = 77/85 (90.59%), Query Frame = 1
Query:    1 MEIFKLVKEEATPEQWKQWLRAPLEHAAARGNLDLFTRLMDAGADGSAGWRGCHGRTLLGAAACGPD-DQMVRALLEAGATDDVN 252
            +EIFKLVKEEA PEQWKQW RAPLEHA ARGNLDLFTRLMDAGADG AGWRGCHGRTLLGAAACG + D+MVRALLEAGA  DVN
Sbjct:   18 IEIFKLVKEEAAPEQWKQWFRAPLEHATARGNLDLFTRLMDAGADGEAGWRGCHGRTLLGAAACGNNSDKMVRALLEAGARRDVN 102          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15406.1 vs.
Match: Ankyrin (repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.720e-37
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 1
Query:    1 MEIFKLVKEEATPEQWKQWLRAPLEHAAARGNLDLFTRLMDAGADGSAGWRGCHGRTLLGAAACGPDDQMVRALLEAGATDDVN 252
            +EIFKL++ EATPEQWK+WLRAPLEHAAA GNLDLFTRLMDAGA+  AGWRGCHGRTLLGAAA G  ++M+R LL AGATDDVN
Sbjct:   19 IEIFKLLRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANTEAGWRGCHGRTLLGAAALGRSEKMIRTLLTAGATDDVN 102          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15406.1 vs.
Match: Similar (to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE9_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.320e-36
Identity = 69/87 (79.31%), Postives = 73/87 (83.91%), Query Frame = 1
Query:    1 MEIFKLVKEEATPEQWKQWLRAPLEHAAARGNLDLFTRLMDAGADGSAGWRG--CHGRTLLGAAACGP-DDQMVRALLEAGATDDVN 252
            +EIFKLVKEEAT  QWKQWLR PLEHAAA+GNLDLFTRLMDAGA G  GWRG  CH RTLLGAAACG   D+M+ ALLEAG TDDVN
Sbjct:   16 IEIFKLVKEEATAGQWKQWLRTPLEHAAAKGNLDLFTRLMDAGAGGEPGWRGWGCHERTLLGAAACGTKSDKMIWALLEAGVTDDVN 102          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15406.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY9_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 2.380e-36
Identity = 66/84 (78.57%), Postives = 73/84 (86.90%), Query Frame = 1
Query:    1 MEIFKLVKEEATPEQWKQWLRAPLEHAAARGNLDLFTRLMDAGADGSAGWRGCHGRTLLGAAACGPDDQMVRALLEAGATDDVN 252
            M+IFKLV+ E TPEQWK+WL APL HAAA+G LDLFTRL++AGADGSAGWRGCHGRTLLG AA    +QMVRA LEAGATDDVN
Sbjct:   17 MKIFKLVQAEETPEQWKKWLGAPLNHAAAKGKLDLFTRLINAGADGSAGWRGCHGRTLLGEAARSDGNQMVRAFLEAGATDDVN 100          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15406.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 3.170e-34
Identity = 67/85 (78.82%), Postives = 73/85 (85.88%), Query Frame = 1
Query:    1 MEIFKLVKEEATPEQWKQWLRAPLEHAAARGNLDLFTRLMDAGA-DGSAGWRGCHGRTLLGAAACGPDDQMVRALLEAGATDDVN 252
            +EIFKLV+EE T EQWKQWL+ PLEHAAARGNLDLFTRLMDAG   G  GWRGC+GRTLLGAAA G  D++VRALLEAGA DDVN
Sbjct:   20 IEIFKLVQEEVTSEQWKQWLQVPLEHAAARGNLDLFTRLMDAGGFGGERGWRGCNGRTLLGAAAWGKSDKVVRALLEAGAGDDVN 104          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15406.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 3.350e-34
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 1
Query:    1 MEIFKLVKEEATPEQWKQWLRAPLEHAAARGNLDLFTRLMDAGADGSAGWRGCHGRTLLGAAACGPDDQMVRALL-EAGATDDVN 252
            +EIFKLV+E+AT  QW++WLRAPLEHAAA GN+DLFTRLMDAGADGSAGWRGCHGRTLLGAAA G ++++V  LL E GAT+DVN
Sbjct:   70 VEIFKLVREQATSMQWREWLRAPLEHAAAEGNIDLFTRLMDAGADGSAGWRGCHGRTLLGAAAYGKNEEIVERLLAEDGATEDVN 154          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15406.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 6.350e-33
Identity = 63/84 (75.00%), Postives = 70/84 (83.33%), Query Frame = 1
Query:    1 MEIFKLVKEEATPEQWKQWLRAPLEHAAARGNLDLFTRLMDAGADGSAGWRGCHGRTLLGAAACGPDDQMVRALLEAGATDDVN 252
            +EIFKLV+  AT EQWK+WLRAP EHAAA GNLD FTRLMDAGA+  AGWRGC+GRTLLGAAA G  ++MVR  L AGATDDVN
Sbjct:   19 IEIFKLVQRGATSEQWKEWLRAPREHAAAEGNLDFFTRLMDAGANAGAGWRGCNGRTLLGAAAFGRSEKMVRTTLTAGATDDVN 102          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15406.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E1_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 3.620e-32
Identity = 63/83 (75.90%), Postives = 70/83 (84.34%), Query Frame = 1
Query:    1 MEIFKLVKEEATPEQWKQWLRAPLEHAAARGNLDLFTRLMDAGADGSAGWRGCHGRTLLGAAACGPDDQMVRALLEAGATDDV 249
            +EIFKLV++EAT EQWK+WLRAPLEHAAA GNLD FTRLMDAGA+  AG RGCHGRTLLGA AC   ++MVR LL  GATDDV
Sbjct:  519 IEIFKLVQKEATSEQWKEWLRAPLEHAAAEGNLDFFTRLMDAGANVEAGRRGCHGRTLLGATACDRSEKMVRTLLTTGATDDV 601          
BLAST of mRNA_E_fasciculatus_S2_contig7226.15406.1 vs.
Match: MHC_I (C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 4.360e-32
Identity = 62/84 (73.81%), Postives = 70/84 (83.33%), Query Frame = 1
Query:    1 MEIFKLVKEEATPEQWKQWLRAPLEHAAARGNLDLFTRLMDAGADGSAGWRGCHGRTLLGAAACGPDDQMVRALLEAGATDDVN 252
            +EIFKLV+ EAT +QWK+WLRAPLEHAAA GNL LFTRLMDAGA   AGWRGC GRTLLGAAAC  + +++RALL AGA  DVN
Sbjct:   21 VEIFKLVQREATSKQWKEWLRAPLEHAAASGNLGLFTRLMDAGASAEAGWRGCDGRTLLGAAACSKNKKILRALLTAGAKSDVN 104          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7226.15406.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized5.190e-4790.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Ankyrin1.560e-4387.06n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
Ankyrin1.720e-3779.76repeat protein n=2 Tax=Ectocarpus siliculosus TaxI... [more]
Similar1.320e-3679.31to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus s... [more]
Uncharacterized2.380e-3678.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.170e-3478.82protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.350e-3476.47protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.350e-3375.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.620e-3275.90protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
MHC_I4.360e-3273.81C-terminus family protein n=1 Tax=Ectocarpus silic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7226contigE_fasciculatus_S2_contig7226:4550..4801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score148.7
Seed ortholog evalue1.2e-33
Seed eggNOG ortholog2880.D8LQE2
Preferred nameANKRD9
Model size252
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_011630.1
Cds size252
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842385.905814-CDS-E_fasciculatus_S2_contig7226:4549..48011696842385.905814-CDS-E_fasciculatus_S2_contig7226:4549..4801Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7226 4550..4801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7226.15406.1prot_E_fasciculatus_S2_contig7226.15406.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7226 4550..4801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7226.15406.1

>prot_E_fasciculatus_S2_contig7226.15406.1 ID=prot_E_fasciculatus_S2_contig7226.15406.1|Name=mRNA_E_fasciculatus_S2_contig7226.15406.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=84bp
MEIFKLVKEEATPEQWKQWLRAPLEHAAARGNLDLFTRLMDAGADGSAGW
RGCHGRTLLGAAACGPDDQMVRALLEAGATDDVN
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mRNA from alignment at E_fasciculatus_S2_contig7226:4550..4801-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7226.15406.1 ID=mRNA_E_fasciculatus_S2_contig7226.15406.1|Name=mRNA_E_fasciculatus_S2_contig7226.15406.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=252bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7226:4550..4801- (Ectocarpus fasciculatus EfasUO2)
ATGGAAATATTCAAACTTGTCAAGGAGGAGGCGACTCCCGAGCAGTGGAA GCAGTGGCTTCGAGCACCTCTGGAGCACGCCGCGGCGAGAGGAAACTTGG ATCTCTTCACGCGGCTGATGGACGCTGGTGCTGATGGTAGCGCAGGCTGG CGGGGATGCCATGGACGAACACTGCTGGGCGCGGCTGCATGCGGCCCGGA CGACCAGATGGTCCGGGCTTTACTCGAAGCTGGGGCGACGGATGATGTAA AC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7226:4550..4801-

>mRNA_E_fasciculatus_S2_contig7226.15406.1 ID=mRNA_E_fasciculatus_S2_contig7226.15406.1|Name=mRNA_E_fasciculatus_S2_contig7226.15406.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=252bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7226:4550..4801- (Ectocarpus fasciculatus EfasUO2)
ATGGAAATATTCAAACTTGTCAAGGAGGAGGCGACTCCCGAGCAGTGGAA
GCAGTGGCTTCGAGCACCTCTGGAGCACGCCGCGGCGAGAGGAAACTTGG
ATCTCTTCACGCGGCTGATGGACGCTGGTGCTGATGGTAGCGCAGGCTGG
CGGGGATGCCATGGACGAACACTGCTGGGCGCGGCTGCATGCGGCCCGGA
CGACCAGATGGTCCGGGCTTTACTCGAAGCTGGGGCGACGGATGATGTAA
AC
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