mRNA_E_fasciculatus_S2_contig7200.15383.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7200.15383.1
Unique NamemRNA_E_fasciculatus_S2_contig7200.15383.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7200.15383.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQL0_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 6.590e-89
Identity = 142/149 (95.30%), Postives = 145/149 (97.32%), Query Frame = 3 
Query:    3 RCLVNAVNAREFCRRLEADLAAGRNEQECRGMVKGVLRGLTLQESIKDAVLYLPRGKRQAAGDAGQSAVEYLASVVEFDAWDKLDKDWTSNVALRNMTPENVMFVRMALDASGSALDTFLRQFESADVDSARELYRLYFLPAEEREQPT 449
            RCLVNAVNAREFC RLEADLAAGRNEQECRGMVKGVLRGL+LQESIKDAVLYLPRGKRQ AGDAGQSAVEYLASVVEFDAWDKLDKDWTSNVALRNMTPENV+FVRMALDAS SALDTFL QF+SADVDSARELYRLYFLPAEEREQPT
Sbjct:  166 RCLVNAVNAREFCGRLEADLAAGRNEQECRGMVKGVLRGLSLQESIKDAVLYLPRGKRQVAGDAGQSAVEYLASVVEFDAWDKLDKDWTSNVALRNMTPENVLFVRMALDASASALDTFLGQFDSADVDSARELYRLYFLPAEEREQPT 314
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BLAST of mRNA_E_fasciculatus_S2_contig7200.15383.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU88_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 3.800e-84
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 3 
Query:    3 RCLVNAVNAREFCRRLEADLAAGRNEQECRGMVKGVLRGLTLQESIKDAVLYLPRGKRQAAGDAGQSAVEYLASVVEFDAWDKLDKDWTSNVALRNMTPENVMFVRMALDASGSALDTFLRQFESADVDSARELYRL 413
            RCLVNAVNAREFCRRLEADLAAGRNEQECRGMVKGVLRGLTLQESIKDAVLYLPRGKRQAAGDAGQSAVEYLASVVEFDAWDKLDKDWTSNVALRNMTPENV+FVRMALDASGSALDTFLRQF+SADVDSARELYRL
Sbjct:  114 RCLVNAVNAREFCRRLEADLAAGRNEQECRGMVKGVLRGLTLQESIKDAVLYLPRGKRQAAGDAGQSAVEYLASVVEFDAWDKLDKDWTSNVALRNMTPENVLFVRMALDASGSALDTFLRQFDSADVDSARELYRL 250
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BLAST of mRNA_E_fasciculatus_S2_contig7200.15383.1 vs.
Match: Uncharacterized (protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IFU1_GUITC)

HSP 1 Score: 55.8 bits (133), Expect = 5.880e-5
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3 
Query:  177 QAAGDAGQSAVEYLASVVEFDAWDKLDKDWTSNVALRNMTPENVMFVRMALDASGSALDTFLRQFESADVDSARELYRLYFLPAEE 434
            QA   AG+  VE+L+ +VE+D WDKLDK+   N   + MT + + F    L+A    +D FL  F +  V  A+E+Y   F P  E
Sbjct:  199 QAQLSAGK-IVEFLSKLVEYDGWDKLDKE-DINPKFQRMTEQKIKFATRGLNAIIEEIDHFLALFPADQVREAQEVYNEVFAPKYE 282
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7200.15383.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized6.590e-8995.30protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.800e-8498.54protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.880e-538.37protein n=2 Tax=Guillardia theta TaxID=55529 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7200contigE_fasciculatus_S2_contig7200:4040..7488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1470
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_003150.1
Cds size363
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7200.15383.1prot_E_fasciculatus_S2_contig7200.15383.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7200 5052..7393 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842383.542583-UTR-E_fasciculatus_S2_contig7200:4039..50511696842383.542583-UTR-E_fasciculatus_S2_contig7200:4039..5051Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7200 4040..5051 -
1696842383.6057355-UTR-E_fasciculatus_S2_contig7200:7393..74881696842383.6057355-UTR-E_fasciculatus_S2_contig7200:7393..7488Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7200 7394..7488 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842383.5557075-CDS-E_fasciculatus_S2_contig7200:5051..50971696842383.5557075-CDS-E_fasciculatus_S2_contig7200:5051..5097Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7200 5052..5097 -
1696842383.5738013-CDS-E_fasciculatus_S2_contig7200:5680..57871696842383.5738013-CDS-E_fasciculatus_S2_contig7200:5680..5787Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7200 5681..5787 -
1696842383.5855033-CDS-E_fasciculatus_S2_contig7200:6279..64051696842383.5855033-CDS-E_fasciculatus_S2_contig7200:6279..6405Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7200 6280..6405 -
1696842383.595484-CDS-E_fasciculatus_S2_contig7200:7309..73931696842383.595484-CDS-E_fasciculatus_S2_contig7200:7309..7393Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7200 7310..7393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7200.15383.1

>prot_E_fasciculatus_S2_contig7200.15383.1 ID=prot_E_fasciculatus_S2_contig7200.15383.1|Name=mRNA_E_fasciculatus_S2_contig7200.15383.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=121bp
MVKGVLRGLTLQESIKDAVLYLPRGKRQAAGDAGQSAVEYLASVVEFDAW
DKLDKDWTSNVALRNMTPENVMFVRMALDASGSALDTFLRQFESADVDSA
RELYRLYFLPAEEREQPTGI*
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mRNA from alignment at E_fasciculatus_S2_contig7200:4040..7488-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7200.15383.1 ID=mRNA_E_fasciculatus_S2_contig7200.15383.1|Name=mRNA_E_fasciculatus_S2_contig7200.15383.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3449bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7200:4040..7488- (Ectocarpus fasciculatus EfasUO2)
GTAGGTGTCTGGTGAACGCCGTCAACGCTCGCGAGTTTTGCAGGCGGTTG
GAGGCGGACCTAGCCGCCGGGCGCAACGAGCAAGAGTGTAGAGGGATGGT
TAAGGGCGTGTTGCGAGGCCTGACCCTCCAGGAGTCCATCAAGGACGCCG
TCCTCTACCTTCCCCGAGGAAAACGCCAGGTGCGAAAATGCTAGGAAATT
TCTTGGTTTCGTGGGGGGCGGGGATTGGGGGGGTTGACTCTCTGGGAGTT
AAGTCATCTCATGGGCCCAAGTCAGGCTGGAGGAGAGAAGGGGAGTCGCA
GTCATATTTAAGTTTTGGGATGGGGATAGATAGGAGGACATTGGGGAGGT
GCTGTTTTCCTGGGAGTCTAAGTTTCCACTGACTCCACCCGGCCCAGCCT
GAAACGGGGTAGGTGGGTGATGATGAATTTCCTCCTCCTGCACATGGTGC
CAGCCGTATCAATATCCTTGGTATCTTGTCTACCCTAAACAAAACAAAAG
TGGCTTGTTGTATGCGCTGTTCCGCAGCGTCGGCTGCTGACTTTTTTTTC
TGTGTTGTTTTTACTCTTTGAGCAATCTTCGCCTTTGTTTTTGACTGATG
CGCTGTCTCTGTTGCTAGTTTTGGCTGAAGGTCTTGGCCACAGCATTGCC
GTCTACCGTGGGTTACAGCATTGCCGTCTACCGTGGGTTGCATGCGTGAC
GTGCGATAACCACGCCCTCTGGGCCGCTTGTCAAAGCTCGAACCCTCTGC
AGCAACACTAGTGGCGGTGCCGCAAAATTGTGGCATCGGATCCACCTCGT
TGAGAGCTTTCCCAAAACGTATCATTTCGTGTTGGCATCATGTTTGTCCT
GGAGTACATCATCGAGCTTTGAAAATCATTTCGTTTTGGCGTCATGTTTG
TCCTGGAGTACAAGGAGGTACTGGATAGAGAGACCGGGATGGTTTTTAAC
GTGAAGACAACAACAACAACAACAACAACAACAACATCATCGAGCTTTGA
AAATCAGTCCAGGGGGTGTGGTGTCTCATGCAACCTACGATGGATCAATT
CGGCTCCGAAATCTTGTCTGCCAACGACTGCAGGCGGCCGGCGACGCAGG
ACAGTCGGCGGTGGAGTATTTAGCGTCGGTAGTAGAGTTCGATGCCTGGG
ACAAGCTTGACAAGGACTGGACTTCAAACGTCGCTCTGAGGAACATGACG
CCCGAGAATGTGAGAGCTCTTGTACATACAAAGTGTCCAGAATGCAGGTA
GTGCCGGCAGTTGAGAACCTCTACCCTTGCCTGGGGTTCTTATTTAGTTG
TTTGGGCTACAAATGACCGCTAGATAAGCATTCGTGCTGTTTTTTCACCG
GGCTCATAAGTTGTGCTGAAGTTCGTTCGTACGATTGATAATTTGTGAGC
GATTAGTTCATAGCTACCAAGTTATGAGTGCGGGCGTTATCTGTATCGTA
TCCGACAATCAGTATAAAGGGCCGACATTGTATGTGCGGCAAAGAAAGCT
AGGCAGAGAGTACGACAGAGACGAAGACAGACAGACAGACAAACCGTGTG
CCAGACGGACAGGCAACACTTCTGAATGTGTATCCGACGAACGTGAACTA
CTGTATTCCTGTTCCGATTACCCACTCCACCAACATGGCGGAGGCTTCGC
CGCTGGAGAAACAGGCTCTGATTATCGTCTTTTTTTCCACGGCTGCGGCA
GGTTATGTTCGTGCGCATGGCGTTGGACGCATCGGGGTCAGCCTTGGACA
CGTTTTTGCGCCAGTTCGAGAGCGCCGACGTAGATTCCGCGAGGGAGTTG
TATAGACTGTGAGTGCTATACCCACCGACTTGCGCCTGAAAAACAGTATC
TATCTGTGTGCACGTGGCAGATAGGAGTACTTCGGAACTTAGAGCTTGGC
CTGTGTTACGATGTTTCCACCGGACTGTCGGAGTCGCCTTCATTTGTTGG
GTCATCAAGATTCTACCTCCGAAAATTAAGTCTTAATCTTTCAATGACTC
TGTCTACACCTGGCACGATGCAACTCGTTTGATGCTTATCCACCCAGCAC
GGTACGACTGAAGGTACGAAAGGTTGAGGGTTTCACAGGGTCCTGCCGTA
GCGACGTGTGCGGCAGCTCCGAAGGTGGTTTGGGCACACGGGTATCCCAC
CCCCAGCTTTTTCGTTCCCTTCCTAGGTCGACGCTCTCACGGGCAGTCTG
TCGTGTTCGCACTCGTCACGAGGAGCTAGCTCTTGGGTCAGGACACATGT
GTAACAAGATTTCAATCGACTATCTTTATCAACCGCTAACACCAATGTCG
GAATGGGTCACCGCCTTCACGAAACTGTTTTTGTCAACAAATCGCTGATT
TTACGCTTTACCCCTCAATGCCATGACGTACTGGACCGCAGATACTTCCT
TCCCGCCGAAGAGAGAGAGCAGCCCACCGGGATCTGAGTCTTTGTGGTTG
TTTGGAATCGATGGCATTAACGGCGCTGAGTGAACGGCGGCAGAAGGCTA
GTCCTCAGGCGATTTACGAATAGGCTGCGGAGGCAAAGAGGCGTGAAGGG
GGTGGCGTAGAGACAAGGCATTTTTACGTCCTAAGGTTGCAGCCGTTGTA
CAACAACAATGTTGCGCGGTGGAACCTGTGCGAATTTGTATTTTGGTACA
CTCCCGGTGGGCATACTGCGTGTAGAGTCGAAGTGGCGGAAGTGCACCCG
GCAGAAGACGTAATCTTGTGAGATTCTTGCAGTTTTGCGACGACTGCCCG
GTCGAAATCCAGAACAATTGGTAGAAACATAAGCAGTGCTCGGCTTGGTT
CATCCAATGGCGAGAACTGCGTAGAACAAGAGGGGAGCTGTTTACGGTTT
GTTCACGGTGCCGTTGGCAGTCTGCCTCGACTGTGTCGCGGACGCCAAGC
TACACTGCCCGCAGCCAGTCGTTGTCACAACGTGCCGGTAAAAAAAAGAA
AAAAAGAAAACGTTGGGCAAACGTTCGAGCATATTGGTGGGTAGTCGAGT
CTAGCATGGCACGGCGTAATATTGTAAGACGCAATATTGTAAGCTTTGCG
GGTCTTCCCCAGGTGTCCTCCACAAACGTTTTTCCATGGATCGGATACTG
TTTCGTTGCGAACACATGCATACGTCCACGCGACAGGCACAAGCTGATAC
GTCGAAACGATGTGGTCTCACAACGGCGTGAGGTAGACAAAATCACTTGA
GACTGCAGCATGTAGTCTACACAGACAACTAGCTGTGTGATGTTGTGCGA
TCAATCGTGTATGTTTGCGTCTTCGATGGAGCCTCTAGATTATATTCCGA
ACTCTTTCAGGATGAGGTTTGCGTGCCTTTGCCTTGCGATGGGACTGAGA
AGTGAGCAAGAAGGGTTCGTGCTTTGGGAAAAAAAAAAAAAACGTTTATA
ACCTGTGGGGGGGGATGCTTGCTGCCTTCCATTGGTTTAACCGTTCCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7200:4040..7488-

>mRNA_E_fasciculatus_S2_contig7200.15383.1 ID=mRNA_E_fasciculatus_S2_contig7200.15383.1|Name=mRNA_E_fasciculatus_S2_contig7200.15383.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=363bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7200:4040..7488- (Ectocarpus fasciculatus EfasUO2)
ATGGTTAAGGGCGTGTTGCGAGGCCTGACCCTCCAGGAGTCCATCAAGGA
CGCCGTCCTCTACCTTCCCCGAGGAAAACGCCAGGCGGCCGGCGACGCAG
GACAGTCGGCGGTGGAGTATTTAGCGTCGGTAGTAGAGTTCGATGCCTGG
GACAAGCTTGACAAGGACTGGACTTCAAACGTCGCTCTGAGGAACATGAC
GCCCGAGAATGTTATGTTCGTGCGCATGGCGTTGGACGCATCGGGGTCAG
CCTTGGACACGTTTTTGCGCCAGTTCGAGAGCGCCGACGTAGATTCCGCG
AGGGAGTTGTATAGACTATACTTCCTTCCCGCCGAAGAGAGAGAGCAGCC
CACCGGGATCTGA
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