mRNA_E_fasciculatus_S2_contig7190.15369.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7190.15369.1
Unique NamemRNA_E_fasciculatus_S2_contig7190.15369.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7190.15369.1 vs.
Match: Kinesin (light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G8_ECTSI)

HSP 1 Score: 789 bits (2037), Expect = 2.200e-284
Identity = 404/425 (95.06%), Postives = 408/425 (96.00%), Query Frame = 1 
Query:    1 MQVNEEIERTAYGAAKRVPERFTDVGTASDYLSSLLVRTSSAGGLRSTLLVLDDVWEAKVVEAFETVGLSLLVTTREPLIARMASSHNAAGVSRLIGPLGPLSDAEATAAAAKAAATRRAPPKEAKQLLDKTGRCPLAVGVVASTLKQAQGPFDWMSTSSKVKKTFAGLHRRRRVKVSTAEQDAEDRVTASIAAGLSNMPEENQMLYSALCILPPGLPVSCRLLEQVWETGKRTTILAAEAFEHRRLLDRLGPGNFVLHYEAARFLQKPPGFAGEGAWVGCKLRGQGRELAFNRLCKHLDSFDTLRDHLAKRDLWGLTQLWQACEAEAKKTSGHSHVSCRIYESRLDLLRQEADIVAGPASRHRSSTAKVACEATLDLAQALDMVADYQNYRRCCDATPLYRESIDSLHQSLELVGIQGDFLGLL 1275
            M VNEE+ER+AYG AKRVPERFTDVGTASDYLSSLLVRTS  GGLRSTLLVLDDVWEAKVVEAFETVGLSLLVTTREPLIARMASSHNAAGVSRLIGPLGPLS AEAT+AAAKAAATRRAPPKEAKQLLDKTGRCPLAVGVVASTLKQAQGP DW+STSSKVKKTFAGLHRRRRVK STAEQDAEDRVTASIAAG SNMPEE QMLYSALCILPPGLPVSCRLLEQVWETGKRTTILAAEAFEHRRLLDRLGPGNFVLHYEAARFLQ PPGFAGEGAWVGCKLRGQGRELAFNRLCKHLDSFDTLRDHLAKRDLWGLTQLWQACE EAKKTSGHSHVSCRIYESRLDLLRQEADIVAGPASRHRSSTAKVACEATLDLAQALDMVADYQ YRRCCDATPLYRESIDSLHQSLELV IQG   G L
Sbjct:    1 MMVNEEMERSAYGVAKRVPERFTDVGTASDYLSSLLVRTSPTGGLRSTLLVLDDVWEAKVVEAFETVGLSLLVTTREPLIARMASSHNAAGVSRLIGPLGPLSGAEATSAAAKAAATRRAPPKEAKQLLDKTGRCPLAVGVVASTLKQAQGPLDWVSTSSKVKKTFAGLHRRRRVKASTAEQDAEDRVTASIAAGFSNMPEETQMLYSALCILPPGLPVSCRLLEQVWETGKRTTILAAEAFEHRRLLDRLGPGNFVLHYEAARFLQNPPGFAGEGAWVGCKLRGQGRELAFNRLCKHLDSFDTLRDHLAKRDLWGLTQLWQACETEAKKTSGHSHVSCRIYESRLDLLRQEADIVAGPASRHRSSTAKVACEATLDLAQALDMVADYQAYRRCCDATPLYRESIDSLHQSLELVSIQGTGSGAL 425
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7190.15369.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX2_9PHAE)

HSP 1 Score: 762 bits (1967), Expect = 3.000e-264
Identity = 393/418 (94.02%), Postives = 400/418 (95.69%), Query Frame = 1 
Query:    4 QVNEEIERTAYGAAKRVPERFTDVGTASDYLSSLLVRTSSAGGLRSTLLVLDDVWEAKVVEAFETVGLSLLVTTREPLIARMASSHNAAGVSRLIGPLGPLSDAEATAAAAKAAATRRAPPKEAKQLLDKTGRCPLAVGVVASTLKQAQGPFDWMSTSSKVKKTFAGLHRRRRVKVSTAEQDAEDRVTASIAAGLSNMPEENQMLYSALCILPPGLPVSCRLLEQVWETGKRTTILAAEAFEHRRLLDRLGPGNFVLHYEAARFLQKPPGFAGEGAWVGCKLRGQGRELAFNRLCKHLDSFDTLRDHLAKRDLWGLTQLWQACEAEAKKTSGHSHVSCRIYESRLDLLRQEADIVAGPASRHRSSTAKVACEATLDLAQALDMVADYQNYRRCCDATPLYRESIDSLHQSLELVGIQG 1257
            QVNEE  R+A+GAAK VPERFTDVGTASDYLSSLLVRTS  GGLRSTLLVLDDVWEAKVVEAFETVGLSLLVTTREPLIARMAS H+AAGVSRLIGPLGPLSDAEA +AAAKAAATRR PPKEAKQLLDKTGRCPLAVGVVASTLKQAQGP DW+STSSKVKKTFAGLHRRRRV  STAEQDAEDRVTASIAAGLSNMPEENQMLYSALCILPPGLPVSCRLLEQVWETGKRTTILAAEAFEHRRLLDRLGPGNFVLHYEAARFLQK  GFAGEGAWVGCKLRGQGRELAFNRLCKHLDSFDTLRDHLAKRDLWGLTQLWQACE EAKKTSGHSHVSCRIYESRLDLLRQEADIVAGPASRH S+TA+VA EATLDLAQALDMVADYQ YRRCCDATPLYRESIDSLHQSLELV IQG
Sbjct:   77 QVNEE--RSAHGAAKHVPERFTDVGTASDYLSSLLVRTSPTGGLRSTLLVLDDVWEAKVVEAFETVGLSLLVTTREPLIARMASPHSAAGVSRLIGPLGPLSDAEAISAAAKAAATRRVPPKEAKQLLDKTGRCPLAVGVVASTLKQAQGPLDWVSTSSKVKKTFAGLHRRRRVTTSTAEQDAEDRVTASIAAGLSNMPEENQMLYSALCILPPGLPVSCRLLEQVWETGKRTTILAAEAFEHRRLLDRLGPGNFVLHYEAARFLQKSAGFAGEGAWVGCKLRGQGRELAFNRLCKHLDSFDTLRDHLAKRDLWGLTQLWQACETEAKKTSGHSHVSCRIYESRLDLLRQEADIVAGPASRHHSTTARVASEATLDLAQALDMVADYQAYRRCCDATPLYRESIDSLHQSLELVRIQG 492
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7190.15369.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.600e-6
Identity = 87/378 (23.02%), Postives = 146/378 (38.62%), Query Frame = 1 
Query:  115 TSSAGGLRSTLLVLDDVWEAKVVEAFETVGLSLLVTTREPLIARMASSHNAAGVSRLIGPLGPLSDAEATAAAAKAAATRRAPPKEAKQLLDKT----GRCPLAVGVVASTLKQAQGPFDWMSTSSKVKKTFAGLHRRRRVKVSTAEQDAEDRVTASIAAGLSNMPEENQMLYSALCILPPGLPVSCRLLEQVWET-GKRTTILAAEAFEHRRLLDRLGPGNFVLHYEAARFLQKPPGFAGEGAWVGCKLRGQGRELAFNRLCKHLDSFDTLRDH------LAKRDLWGLTQLWQACEAEAKKTSGHSHVSCRIYESRLDLLRQEADIVAGPASRHRSSTAKVACEATLDLAQALDMVADYQNYR-RCCDATPLYRES 1212
            T ++ G    L+VLDDVWE +VV+A  ++GL +LVTTR+          +  GVS  +  LG +++ EA     K + T   P  E +  + K     G  PL + + A ++   +G         ++ K F  + ++ RV+    EQ +  +V   +      +    Q     + +L  G      +L  +WE      T   AE    + LL  +G   + +H     F++              +   +  E A     ++L   D L+ +         + L+ L  LW++ E    K SG   +    Y + L  L                      CEAT D+A +   V    N + +  +A PLY  S
Sbjct:  120 TVASAGTSPRLVVLDDVWEREVVDALLSLGLKVLVTTRD---------RSVVGVSGGLLELGDMTEEEALELLLKTSRTVGQPGHEVRTQMTKVVVLCGHLPLVLAI-AGSMSVVKGKGLTAVAWEELIKEFENVAKKMRVR---GEQSSSIKVV--LGTSFDALAARKQEESLKMTVLAAGALAPIEMLRNLWEIEDAEGTREEAEGLVSKCLLQAVGGSGYRVHDLVLEFVK-----------TSIRAEEEMVEKATALQAQYLGRVDVLKSYGDPEHGAGNQGLFFLDALWRSVE----KLSGDPELEVASYRASLGELES--------------------CEATEDVASSYRWVGFLFNIQGKFTEAEPLYGRS 447
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7190.15369.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.080e-5
Identity = 53/164 (32.32%), Postives = 85/164 (51.83%), Query Frame = 1 
Query:   16 EIERTAYGAAKRVPERFTDVGTASDYLSSLLVRTSSAGGLRSTLLVLDDVWEAKVVEAFETVGLSLLVTTREPLIARMASSHNAAGVSRLIGPLGPLSDAEATAAAAKAA-ATRRAPPKEAKQLLDKTGRCPLAVGVVASTLK-QAQGPFDWMSTSSKVKKTFA 501
            E+ R      +  P RF+    A  +LSS+        GLR  L+VLD+VW  +VV AF + G  +LVTTR+  +  +++ H  AGV   +G +   S+ +A    +KA+ A    P +EA+Q+    G  PLA+G++ +  K Q   P  W +   K+++  A
Sbjct:  324 ELSRVPTDTPRSCPNRFSGAEEALRHLSSVCAED----GLRC-LVVLDNVWNVEVVNAFASTGFHVLVTTRQRAV--ISAVH--AGVWTEVGDM---SEEDALEVLSKASQADGPLPAEEARQVALDCGMLPLALGMIGALAKDQPLDPLSWRAVHKKLQEKRA 475
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7190.15369.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Kinesin2.200e-28495.06light chain n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
NB-ARC3.000e-26494.02domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
NB-ARC4.600e-623.02domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
NB-ARC1.080e-532.32and TPR repeat-containing protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7190contigE_fasciculatus_S2_contig7190:342..6102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score65.1
Seed ortholog evalue9.1e-08
Seed eggNOG ortholog2880.D7G7W8
Model size1275
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Cds size1275
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7190.15369.1prot_E_fasciculatus_S2_contig7190.15369.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7190 342..6102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842381.9707615-CDS-E_fasciculatus_S2_contig7190:341..5171696842381.9707615-CDS-E_fasciculatus_S2_contig7190:341..517Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7190 342..517 -
1696842381.983659-CDS-E_fasciculatus_S2_contig7190:1072..12541696842381.983659-CDS-E_fasciculatus_S2_contig7190:1072..1254Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7190 1073..1254 -
1696842381.994205-CDS-E_fasciculatus_S2_contig7190:2064..22761696842381.994205-CDS-E_fasciculatus_S2_contig7190:2064..2276Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7190 2065..2276 -
1696842382.0075042-CDS-E_fasciculatus_S2_contig7190:2810..29031696842382.0075042-CDS-E_fasciculatus_S2_contig7190:2810..2903Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7190 2811..2903 -
1696842382.0194395-CDS-E_fasciculatus_S2_contig7190:3212..33801696842382.0194395-CDS-E_fasciculatus_S2_contig7190:3212..3380Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7190 3213..3380 -
1696842382.0320773-CDS-E_fasciculatus_S2_contig7190:4475..46881696842382.0320773-CDS-E_fasciculatus_S2_contig7190:4475..4688Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7190 4476..4688 -
1696842382.0459065-CDS-E_fasciculatus_S2_contig7190:5153..52541696842382.0459065-CDS-E_fasciculatus_S2_contig7190:5153..5254Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7190 5154..5254 -
1696842382.0570958-CDS-E_fasciculatus_S2_contig7190:5972..61021696842382.0570958-CDS-E_fasciculatus_S2_contig7190:5972..6102Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7190 5973..6102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7190.15369.1

>prot_E_fasciculatus_S2_contig7190.15369.1 ID=prot_E_fasciculatus_S2_contig7190.15369.1|Name=mRNA_E_fasciculatus_S2_contig7190.15369.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=425bp
MQVNEEIERTAYGAAKRVPERFTDVGTASDYLSSLLVRTSSAGGLRSTLL
VLDDVWEAKVVEAFETVGLSLLVTTREPLIARMASSHNAAGVSRLIGPLG
PLSDAEATAAAAKAAATRRAPPKEAKQLLDKTGRCPLAVGVVASTLKQAQ
GPFDWMSTSSKVKKTFAGLHRRRRVKVSTAEQDAEDRVTASIAAGLSNMP
EENQMLYSALCILPPGLPVSCRLLEQVWETGKRTTILAAEAFEHRRLLDR
LGPGNFVLHYEAARFLQKPPGFAGEGAWVGCKLRGQGRELAFNRLCKHLD
SFDTLRDHLAKRDLWGLTQLWQACEAEAKKTSGHSHVSCRIYESRLDLLR
QEADIVAGPASRHRSSTAKVACEATLDLAQALDMVADYQNYRRCCDATPL
YRESIDSLHQSLELVGIQGDFLGLL
back to top

mRNA from alignment at E_fasciculatus_S2_contig7190:342..6102-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7190.15369.1 ID=mRNA_E_fasciculatus_S2_contig7190.15369.1|Name=mRNA_E_fasciculatus_S2_contig7190.15369.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5761bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7190:342..6102- (Ectocarpus fasciculatus EfasUO2)
ATGCAGGTGAACGAGGAGATAGAGCGAACTGCGTACGGGGCGGCCAAGCG
CGTCCCCGAGAGATTCACCGACGTCGGCACCGCCTCGGACTACCTGTCCT
CGCTGCTCGTGCGGACTTCCTCCGCAGGAGGTGGGTCAACGAGCGTCAAT
CGAACAACCACCTGGTCTCCTTTCGTACTTGTATTAACGTTACTTGCTTC
GCGTACACTGTCTGAGCATTTTAGTCTACGCAGGTTTTTACAAGCAAGCA
ATTATACTGGATAAAGTATAGGAGGTTAGGGTTAGGTTCTGCGTGCCCCC
CCCCCCGTATTGTTTTCGCATTATCCTTGCTTTCTTAACGCAGGAATCCA
AGAACCGCACCGATGTGTCTGGCGTCCTTTCGCTCTATGCTGACTCCGTT
GTTTGTGCTTTTGGGCTGTCTGTCCAGGTCTTGACAAGACGCTCGTTGTT
GCTGGTGTGTTTTGCGTTGAATGAATGTTGCCCCGGGTCTTTACAAGACG
CTAGTTTTTGTGTGACAACTCGGTTTGTTGTGCCTTTAGCCTCGCAAGGG
TGTCGTCAGACTTGGACGCGTGTTGGTTTTGTTCGGCCGAGCGGAAGAAA
GTGCGCACAGCCCGTTTGTCCGTTGTACCCTAGCGTGCGAAGCAAGCAAG
TTTTCTCCGCTCTGGTCGTGACACCGACGCTTGTTCGTTTTGTTCGGTCG
AACGTGAACGTGTGCACCGTCTGTGGCGTTGGTTGCTCAGACCTGCAAAG
AAAGCTGTCCAGGTCGAGACATGAACACTTAATAGTTACTTCTGTTTGGC
CGAGAGAGTGAACAACGTGTGCACCGTCCGTTGTTTCGTTGTGTCCAGGC
CTGCGAAGCACCCTCCTGGTGCTAGACGACGTGTGGGAGGCGAAGGTGGT
GGAGGCGTTCGAGACGGTGGGGCTGTCGCTTCTCGTCACTACCCGGGAGG
TGCGTAGCCGGTGATAGTGGTGGTGGTCATGGTGGGACTAGGTGTCGCTG
GTTGCCGGGGATTGGTTGGCTGTTGTTGTTGTTGTTGGTGTCCTGTGTCA
TGTGTTACGTGTTGCGTGTTCTCTCTTGATGCTGCTGTTGTTAGCTGTTG
TTTGTGTCCGTTGCTGTTGTTGTTGTTGTTGTTGGTGGTGGTGCACACGT
GGCTCATCGTTGTCGGTACGATACTCTTCGCGGTTGTCCACCAAGAGTAA
AGTGTAGGGTGCCCATGATCATGGCGGTGGCGATTCTAATATCCAACTAG
CCTCCCCCCATGCGCTCGGTGCCTGCTCTGCCTGTGTCTTCTTTGTGTCT
GCTCTGTCTCTCTGCCTCTCTGTCTCTCTGCCTCTCTCCCTCTCTCCCTC
TCTATTTCTCTACCCTCCCTCTATGCTTGTGTGACTATCCACCCCCCAAA
AAACACACACACAGCCGCTGATCGCCAGGATGGCGTCCTCCCACAATGCC
GCCGGCGTCTCCCGTCTCATCGGCCCTCTGGGCCCCCTATCCGACGCCGA
GGCTACCGCCGCGGCGGCAAAGGCGGCGGCCACTCGGAGGGCACCCCCGA
AGGAAGCCAAGCAGCTGCTGGACAAGACCGGCCGCTGCCCGCTGGCGGTT
GGAGTGGTCGCGTCCACCCTCAAGCAGGTGAGTTTTATGGGTACAGTGGG
TACAGCGTACAGTACAGTGGGGGTATGGTGGTTGTGGGGCAACAGATGTT
GGCCGCCTTGTATGGGGCAGTATTATTAATAGAACAGCTTGATTATTCCG
TCTATTCCAGCCAATTTCACCCGCCCTATATGTAGGGCGACCGCGATATT
CAAACAACCTTTTTGTTCGGGGACCCCAACTGTACCCCAACTGTACGGTA
GAGGTTTCGCTAGAGAAAACGCCCTTGTGCTGTGAGGCACCCACCCGGCA
GTGTTGAGATTATGAGACAACTTGACGATCCAAGCGATTGCACCGGCCTT
GAATACGCGGCTTTCAACAGGTACCGGTACTGCTGTAGATGTCGATATTG
TTTGCTTCTTGGCGGTTGGTGTCTTGGGAGCACTTGGGGGCCGCTGAACA
CGCCGCACAGCACTCTCTCCAAAAGTCCTTCGAAAAATTACCTTTCCTAC
AGTAGAAGAGAAACAATTCAAAATCTGGCCTCGTTTCGAAGTTTTTCGAA
ATGGTTTCCGCAAGACGTATCTCTGCACAGCCTTGTTGGTGGTTACTTTG
ACTCGCTTGGTTACGAGGGAGTTGTGTGGAGGCGGACAACTTGTTGTCAG
ATGAGCAGAGATAATTGGTCGAACCAAGAACCTTGCTATATTTTTCAGAG
GAGGGTAGAGGAGGGGGAAAGCCACTGCCCTCCCTGGGGTCCCGCCGCCC
ACCTGCCCTACCACCACACAACACGCATCCATGTACCCCCCAGAATCCCC
GCAGATGAATTTCGAGTACAACCCAAACAGCGGGGGGTTCGCGGTACGTA
TTTCAGATATATCACCATCCCCGCCACGTCGGTGGTGCAGGCTCCGGGAC
CCCCCTGCTCCCTCTTTGCAAATTGACGCCATTGGGCCAATTGCAAGGAT
GATGGCCAGCTTCTGGTAGAAAACATCCTTGTGAACCGTAGGCTGGACCA
GCGAAAACCCGGCATATCGCCCCGTCCCGGCATTGTAATGGGGATGCGAG
GCCTACCGACCACGGCATGCATTTACATGAGTACCACCCCCCCCCCCCCG
CGCGCGCGCCTATCTTCTGCAGGCGCAGGGCCCCTTCGATTGGATGAGCA
CTTCTTCGAAGGTGAAGAAGACGTTCGCCGGGCTTCACCGACGACGAAGG
GTGAAGGTGTCGACCGCCGAACAGGATGCCGAAGACAGGGTCACGGCGTC
CATCGCTGCCGGCCTCTCCAACATGCCGGAGGAGAACCAGGTGAGTCATC
AGGGGGCGGGCTCCGCGGCAATAAAAGGCTGTGGTGCGGCGCTGTAGAAG
CAGAAGGGGGCTCTGCCTTCCTGGAGCCGCCGTTGTTTATGTGCGCGTTT
TATTGGCATGGACCGCTGTTCCTGTCACATCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTGTCTCGTGGCAAGTC
ATCTCCAAGATGATGCCGTTTGTTCCAAATCAGGCAGGCGATTGCGCACG
TTCACAGAGCCGTTGTCCTCGCCCCCATCCCGTGCCTGTGTCGATGTAGA
TGCTTTACTCGGCGCTTTGCATCCTACCCCCGGGGCTGCCGGTCAGCTGT
CGCCTGCTGGAACAAGTGTGGGAGACCGGAAAAAGGACGACGGTGAGCGG
GGGGTGGGGGCTCCGTCATATCATGTGCTTGCTTTTTTGGCATGTAGTGA
TGGTGTCACCTGTGTTTCTCCATTACCGAGGATGTCCCTGCTTTTTAGTT
TCCGCATTATCGTTGCTTGTTTTTTTGGTTTGCAGTCTCATCTCATTGTC
ACCTGTGTTTCTCTTCTCTGTGAGTGATCCCGCTGCTATGCATAGTGTCT
CTGCTGTTGGAGTGCCGCGTCTACTTCGGGGTTCAGCCCCCGACAACGTC
ACCGAAGCGTTCTAGCACGACCGAGTGTCTCACCTATATTAACACACATA
CCATACCCCTTTGTTGTTTTTGGGTTACGGACTCTTGGAGTCCATTTTAC
TTTTGAGTATTCCCTTTTCGGGGTAGTTGGCCTGTGACCACGGGAATCAA
TCGACCGCGGCAAGTGCTAGATCAGTACAGGCAAAGGGAGGTACTGGATA
GAGAGATCGGAACGTTTTTTTTAATGTGAGGACAACAACAACAACGACCC
TCCCATTTTTGTCGTTTGTTTATCAGATTCTCGCAGCAGAGGCGTTCGAG
CACCGTAGGCTGCTCGATCGGCTGGGACCAGGGAACTTTGTGCTCCACTA
TGAGGCGGCTCGCTTCTTGCAGAAACCCCCGGGCTTCGCGGGGGAAGGGG
CGTGGGTTGGGTGCAAGCTGCGCGGACAAGGGAGGGAGCTGGCGTTCAAC
AGGCTCTGCAAGCACCTCGACAGCTTTGACACGCTCAGGTATGAAGTGGA
TGTGGAATCTCCGATGGTGTTTGTCTTTTTTCTCTCTTTTGTCTGTCCTG
TCTTGTTCTCTTTTCTCTCTTTTGTGTTTTTTCTGTCTCTTCTGTCTCTT
CTCTCTTTTTTTTCTCTGCTGTCTTCTGTCTTTTTTTTTTTTTTCTGTAT
TTTCTGTATTTTCTGCTGTCTTTGCTGTCGTTGCTGTCTGTCTTTGTTGT
CTGTTTTGTCTTTTCTGTATTTATGTCTTTTATGTCTTTTTTGTCTTTCA
TGTCTTTGTGGTCGTATGTGTCTTTTCTGTATTTATCGTCTTTTTCATCT
TTTCTGTCTTTTCTCTTCTGTTTGTTTTGCCTTTTCAGTGCTTGTCTTTT
TTGTCTTTTATATCTTTTTCGTCTTCTCTGTCCTCTCTGTATTTAAAGTC
TTTTTCGTCTTTTGTGTCTTTTTCTGTCTTTGTTGTCTTTTCTGTCTTTT
CTGTCTTTTCTGTTGTCTCTTCTGTTTGTCATGCCTTTTCAGTCTTTTTG
TCTTTTTCGTCTTTTTCATCTGTTCTGTCTTTTCTGTCTTGTCTGTCTGT
CTCTTTTGCCCATCTCTGTCTCTGTTTGTCTGTCTGTGTCTCTCCCTCTC
TCCCTCCTTCCCTGTCGCCTTCTGTCTCTGTCTTTCTCTCTTTCTCCCTC
TCTGTGTGTCTTTCTCTCTCTCTCTGTCTCTCTATCTCCCCCTCCCCACC
CCTCCCCTCGCGTACCCTGGTAGCACTCATTCTGTCCTTCACTCTATTGC
CCGCTCCCATCTCATCTACCTTCGTGTATCTCCTCTTTGACGGCGCAGAG
ACCATCTCGCCAAGCGGGACCTGTGGGGCCTAACGCAGCTGTGGCAGGCC
TGCGAGGCGGAGGCCAAGAAGACGTCGGGACACAGCCACGTCTCGTGCCG
AATCTACGAGTCTCGCCTCGATCTCCTACGACAGGAGGCGGACATTGTCG
CCGGACCCGCCAGCAGACATCGGTCGTCCAGTGAGTAGGCAACGTGATAC
CCTTATTTTTTTTTTGGAAACCGGTTATCCAGTAAGCAGCATGAGATTGT
GTTTTTGTTGCCTATATTTGTATGTGTAATCCAATTCCCGACCTTGCCAG
CTGACATTGATTGTTCCGGGGGCAAGCAGGGTGGCAGTTTTTTTTTTTTT
ATCTTTACTGTCTTGTGTGTGCGAAGCTCAACAATCGGGAAAGGTGTGAT
GTACACTGGCACCCGCAGCAGTAGATACAACGGACTTTTGGCCTGTGTTG
CTGGGAAGCGTGCGCGGACCAGCGCTGGTGTATCTCTCATGTACAAGTAC
CTCCCGTCTCCTGTTCTCTTTCTCGGCGCAGGGTATATAGGAGTGCAACA
GCGAGGCGCCACGTTGTGCTGTGGCTAGTAGTTCGCTGTCTTCCCCCGTG
TATCATGGTCGAGTTTTTTGTAGACGATTGTTCGCCATCCATGATCTCTT
GAGTTTTTTCTCGTCTCATCCCACCCCCATCCGCGCTGTGTTTTTTGTTT
TTAATGCTGTTGTTTTTTAACGCACTCTCGAACAGCTGCAAAGGTGGCCT
GCGAGGCTACCCTGGACCTGGCGCAGGCGCTTGACATGGTGGCTGACTAC
CAAAATTACCGCCGCTGCTGCGACGCCACCCCTCTCTACAGGGAGAGCAT
TGACTCTCTCCACCAATCGCTTGAGCTGGTTGGCATCCAAGGTGATTTTC
TCGGCTTGCTA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7190:342..6102-

>mRNA_E_fasciculatus_S2_contig7190.15369.1 ID=mRNA_E_fasciculatus_S2_contig7190.15369.1|Name=mRNA_E_fasciculatus_S2_contig7190.15369.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1275bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7190:342..6102- (Ectocarpus fasciculatus EfasUO2)
ATGCAGGTGAACGAGGAGATAGAGCGAACTGCGTACGGGGCGGCCAAGCG
CGTCCCCGAGAGATTCACCGACGTCGGCACCGCCTCGGACTACCTGTCCT
CGCTGCTCGTGCGGACTTCCTCCGCAGGAGGCCTGCGAAGCACCCTCCTG
GTGCTAGACGACGTGTGGGAGGCGAAGGTGGTGGAGGCGTTCGAGACGGT
GGGGCTGTCGCTTCTCGTCACTACCCGGGAGCCGCTGATCGCCAGGATGG
CGTCCTCCCACAATGCCGCCGGCGTCTCCCGTCTCATCGGCCCTCTGGGC
CCCCTATCCGACGCCGAGGCTACCGCCGCGGCGGCAAAGGCGGCGGCCAC
TCGGAGGGCACCCCCGAAGGAAGCCAAGCAGCTGCTGGACAAGACCGGCC
GCTGCCCGCTGGCGGTTGGAGTGGTCGCGTCCACCCTCAAGCAGGCGCAG
GGCCCCTTCGATTGGATGAGCACTTCTTCGAAGGTGAAGAAGACGTTCGC
CGGGCTTCACCGACGACGAAGGGTGAAGGTGTCGACCGCCGAACAGGATG
CCGAAGACAGGGTCACGGCGTCCATCGCTGCCGGCCTCTCCAACATGCCG
GAGGAGAACCAGATGCTTTACTCGGCGCTTTGCATCCTACCCCCGGGGCT
GCCGGTCAGCTGTCGCCTGCTGGAACAAGTGTGGGAGACCGGAAAAAGGA
CGACGATTCTCGCAGCAGAGGCGTTCGAGCACCGTAGGCTGCTCGATCGG
CTGGGACCAGGGAACTTTGTGCTCCACTATGAGGCGGCTCGCTTCTTGCA
GAAACCCCCGGGCTTCGCGGGGGAAGGGGCGTGGGTTGGGTGCAAGCTGC
GCGGACAAGGGAGGGAGCTGGCGTTCAACAGGCTCTGCAAGCACCTCGAC
AGCTTTGACACGCTCAGAGACCATCTCGCCAAGCGGGACCTGTGGGGCCT
AACGCAGCTGTGGCAGGCCTGCGAGGCGGAGGCCAAGAAGACGTCGGGAC
ACAGCCACGTCTCGTGCCGAATCTACGAGTCTCGCCTCGATCTCCTACGA
CAGGAGGCGGACATTGTCGCCGGACCCGCCAGCAGACATCGGTCGTCCAC
TGCAAAGGTGGCCTGCGAGGCTACCCTGGACCTGGCGCAGGCGCTTGACA
TGGTGGCTGACTACCAAAATTACCGCCGCTGCTGCGACGCCACCCCTCTC
TACAGGGAGAGCATTGACTCTCTCCACCAATCGCTTGAGCTGGTTGGCAT
CCAAGGTGATTTTCTCGGCTTGCTA
back to top