mRNA_E_fasciculatus_S2_contig7188.15365.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7188.15365.1
Unique NamemRNA_E_fasciculatus_S2_contig7188.15365.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7188.15365.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ24_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.940e-19
Identity = 45/49 (91.84%), Postives = 46/49 (93.88%), Query Frame = 2 
Query: 1169 RERSAQKDTSVLLHTQQPSPPVGHERSRRQGGGHRQGRRRVDEWSRCGQ 1315
            RERSA+K TSVLLHTQQ SPPVGHERSRRQGGGHRQGRRRVD WSRCGQ
Sbjct:    8 RERSAEKYTSVLLHTQQLSPPVGHERSRRQGGGHRQGRRRVDRWSRCGQ 56
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BLAST of mRNA_E_fasciculatus_S2_contig7188.15365.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 8.500e-19
Identity = 67/108 (62.04%), Postives = 79/108 (73.15%), Query Frame = 2 
Query:  155 YDSNDTEKSFMYSSXXXXXXXXXXXXXXXXXTLGGDFRQSLQGLGSWMPNLEVLRVLDWERDADDEIVSSHDILLRGIEWPKGLRELTVFDHSRLDGVVIPSTVKVYR 478
            ++S   + + M+S  XXXXXXXXXXXXXXX TLG  FRQSLQGLG+W+PNLE+   LD    + DE     D LLRGIEWP GLR+L VF  SRLDGV+IPSTV+V R
Sbjct:  300 HESQGFDHAIMFSEFXXXXXXXXXXXXXXXLTLGHKFRQSLQGLGTWIPNLEIFHFLDHSNGSGDE-----DSLLRGIEWPTGLRQLAVFRDSRLDGVIIPSTVEVSR 402
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BLAST of mRNA_E_fasciculatus_S2_contig7188.15365.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG0_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 2.870e-17
Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 2 
Query:  248 TLGGDFRQSLQGLGSWMPNLEVLRVLDWERDADDEIVSSHDILLRGIEWPKGLRELTVFDHSRLDGVVIPSTVKV 472
            TLG  FRQSLQGLG+WMPNLE LR+L+W  D  +      D LLR IEWPKGL +LTVF  S L+ V IP+ V+V
Sbjct:   24 TLGHKFRQSLQGLGTWMPNLESLRLLEWYVDLQN------DSLLRRIEWPKGLLQLTVFKESSLEDVGIPAPVEV 92
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BLAST of mRNA_E_fasciculatus_S2_contig7188.15365.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 6.850e-16
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 2 
Query:  251 LGGDFRQSLQGLGSWMPNLEVLRVLDWERDADDEIVSSHDILLRGIEWPKGLRELTVFDHSRLDGVVIPSTVKV 472
            LG DF+QSLQGLG+WMPNLEVLR+ D+ RD D      +D LL GI WP GLR+L V++ +++DGV IPSTV+V
Sbjct:  309 LGDDFKQSLQGLGTWMPNLEVLRLFDF-RDPD----FGNDSLLLGIGWPTGLRQLAVYECTKMDGVTIPSTVEV 377
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BLAST of mRNA_E_fasciculatus_S2_contig7188.15365.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.650e-15
Identity = 46/78 (58.97%), Postives = 54/78 (69.23%), Query Frame = 2 
Query:  254 GGDFRQSLQGLGSWMPNLEVLRVLDWERDADDEIVSSHDILLRGIEWPKGLRELTVFDHSRLDGVVIPSTVKVYRPKL 487
            G  FRQSLQGLG WMP+L+V R+LD+   +D         LLRGIEWPKGLR LTV   S L+GV IPST++V RP L
Sbjct:  607 GHRFRQSLQGLGIWMPHLQVFRLLDYGVGSDG--------LLRGIEWPKGLRHLTVLARSNLEGVEIPSTIQVCRPDL 676
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BLAST of mRNA_E_fasciculatus_S2_contig7188.15365.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.060e-13
Identity = 44/74 (59.46%), Postives = 50/74 (67.57%), Query Frame = 2 
Query:  248 TLGGDFRQSLQGLGSWMPNLEVLRVLDWERDADDEIVSSHDILLRGIEWPKGLRELTVFDHSRLDGVVIPSTVK 469
            TLG +FRQSLQ LG+WMPNLE   +L    D+  E     D  LRGIEWPKGLR+L V   S L GVVIPSTV+
Sbjct:  271 TLGQNFRQSLQELGTWMPNLETFHLLHHIHDSGTE-----DSFLRGIEWPKGLRQLAVCRLSSLAGVVIPSTVE 339
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BLAST of mRNA_E_fasciculatus_S2_contig7188.15365.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.150e-10
Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = 2 
Query:  251 LGGDFRQSLQGLGSWMPNLEVLRVLDWERDADDEIVSSHDILLRGIEWPKGLRELTVFDHSRLDGVVIPSTVKV 472
            LG  FRQSLQGLG+WMPNLEVL +L +      +        LR IEWPKGLR LT+ + + +DGV IP  V+V
Sbjct:  350 LGHMFRQSLQGLGTWMPNLEVLHLLHYHGSGLGD-----SNFLREIEWPKGLRHLTLLEGTSIDGVDIPLAVQV 418
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BLAST of mRNA_E_fasciculatus_S2_contig7188.15365.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.120e-10
Identity = 43/101 (42.57%), Postives = 52/101 (51.49%), Query Frame = 2 
Query:  155 YDSNDTEKSFMYSSXXXXXXXXXXXXXXXXXTLGGDFRQSLQGLGSWMPNLEVLRVLDWERDADDEIVSSHDILLRGIEWPKGLRELTVFDHSRLDGVVIP 457
            +D    E + M S+                 TLG  F++SLQGLG+ MPNLE   +LD    +  E        LRGIEWPK LR L VF +S LDGVVIP
Sbjct:  312 HDGEGFENAVMLSAFNQRVDMCEWPVSMRRLTLGHKFKESLQGLGTRMPNLEAFHLLDHRNGSGSEDS------LRGIEWPKVLRHLVVFSNSSLDGVVIP 406
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7188.15365.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6G6_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.240e-5
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 2 
Query: 1211 TQQPSPPVGHERSRRQGGGHRQGRRRVDEWSRCGQ 1315
            TQQ SPP+GHE   RQ  GHRQG RRV+ WSRCGQ
Sbjct:   17 TQQLSPPIGHEGCPRQDAGHRQGHRRVNAWSRCGQ 51
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7188.15365.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Uncharacterized1.940e-1991.84protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.500e-1962.04protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.870e-1760.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.850e-1660.81protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.650e-1558.97protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.060e-1359.46protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.150e-1052.70protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.120e-1042.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.240e-571.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7188contigE_fasciculatus_S2_contig7188:5253..6845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1593
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842381.3693666-UTR-E_fasciculatus_S2_contig7188:5252..54361696842381.3693666-UTR-E_fasciculatus_S2_contig7188:5252..5436Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7188 5253..5436 +
1696842381.4006965-UTR-E_fasciculatus_S2_contig7188:5748..68451696842381.4006965-UTR-E_fasciculatus_S2_contig7188:5748..6845Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7188 5749..6845 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842381.3872602-CDS-E_fasciculatus_S2_contig7188:5436..57481696842381.3872602-CDS-E_fasciculatus_S2_contig7188:5436..5748Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7188 5437..5748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7188.15365.1prot_E_fasciculatus_S2_contig7188.15365.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7188 5437..5748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7188.15365.1

>prot_E_fasciculatus_S2_contig7188.15365.1 ID=prot_E_fasciculatus_S2_contig7188.15365.1|Name=mRNA_E_fasciculatus_S2_contig7188.15365.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=104bp
MYSSFNQPIGSSIWPASLRRLTLGGDFRQSLQGLGSWMPNLEVLRVLDWE
RDADDEIVSSHDILLRGIEWPKGLRELTVFDHSRLDGVVIPSTVKVYRPK
LYI*
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mRNA from alignment at E_fasciculatus_S2_contig7188:5253..6845+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7188.15365.1 ID=mRNA_E_fasciculatus_S2_contig7188.15365.1|Name=mRNA_E_fasciculatus_S2_contig7188.15365.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1593bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7188:5253..6845+ (Ectocarpus fasciculatus EfasUO2)
GCATCTCCAGTTTGGTTCCGACTTCAACCACCCGATCGAGCGAGCCAAGT
TTCCGGCATCGCTGCAGCAGCTCACCTTCGAAGGCTATTTCAACCAGCCT
GTTGACGACGTGGGGTGGCCGGCGTCATTGCAAGAGATATCGTTTGGATG
TTGCTACGATTCCAATGACACTGAAAAGTCGTTCATGTATTCGAGCTTCA
ACCAGCCCATAGGAAGCAGCATTTGGCCTGCATCGCTTCGGCGACTCACA
CTAGGAGGAGACTTCAGGCAGTCACTGCAAGGACTGGGCTCTTGGATGCC
CAACCTCGAAGTCTTACGTGTTCTTGACTGGGAGCGTGATGCAGACGACG
AAATCGTTTCAAGCCACGATATCCTTCTCCGCGGAATCGAATGGCCAAAG
GGCCTTCGTGAGCTGACCGTGTTCGATCACTCGCGTTTAGATGGGGTTGT
AATTCCTTCAACTGTAAAGGTCTATCGTCCAAAATTGTATATTTGATTGT
GCAGATAGCAGCAGCTTTCCCCCAGTTTAATGCTGCGCGAAGATGTAGTT
GATACGTTCAGCGGAAAGTATGATTTGGGATATTGGGGCGGTACCGGTGG
AAGCTGAAGTGCTTGAAATACCTGATGACATACGAGGGCTCCGTCTCACG
TTGGTTGTGAAACGACTATGACACCCCAGTCTTTCTCCTGTTCGATGTAG
TCAACACATGGATGCGGCTGTTGCGAGGTAGAGGAGAATTGGCTCTTGGG
GGTATGTGTTGGGCGGGGGTCGTCAAATGGTTTCGAACATGTGCTGCTCG
GTTTGCCATACAATGCGTGAGGTCGACCACACGACCCGGAAGCAACGTAC
CTGGTACATCGTAGTCGACGTGTTCGTTGGCAGCATGAGTGAATCACGTT
AGGGGCTTCAACCAGAAATTCAGTAGGTTGGTGGCGTTCTGTCTGGGATT
GTTGAAGAATTCATCAATTGCAATTCGGAATCTCCACTAAAATACAACAC
TGTTGGCTTGTGACCACGGAAGGCATCTGCATCAGTTGGACTAGTGCGGA
CCTTCCAAGGTACTGAGCGGAGACCGGATTGGTTTTTACCCCTTTGGGTC
TAGGCTGGACTTTTGGTCAGATTTGTTTTTTTTGCTCCATAAATGTAAAT
GGGAGAGAGAGCGAGCGGAGAGAGAGAAGTGCACAGAAAGACACCAGTGT
ACTTCTGCACACGCAACAGCCATCTCCACCTGTAGGCCATGAGAGAAGCC
GGCGACAGGGTGGTGGCCACAGACAGGGTCGTAGAAGGGTTGATGAGTGG
TCGCGCTGCGGTCAGGGCAGGTCAGCTGTGTAGACTTTGATATGATCAGT
CGTCTAGCTGCCTCAACATTCTACTTTCAGTATATTGTATATGATCAGTC
AGAGAGAGGCGAAATGATCAGTGAAGACCCATATAGCTGGTATTTGTACT
TTTCTTCTGTACTTCCCTCTCTGTTCTTTGTCCCCCCCCCGAAATGTGCC
CTGCCAGCTCTCTAGAGCTCCTGTGATTTTTCTAACGACAAGCACATCCA
CCAGCTTCAGGGTATTCCCCACCCAGAACAAGCCCGCGTGCCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7188:5253..6845+

>mRNA_E_fasciculatus_S2_contig7188.15365.1 ID=mRNA_E_fasciculatus_S2_contig7188.15365.1|Name=mRNA_E_fasciculatus_S2_contig7188.15365.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=312bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7188:5253..6845+ (Ectocarpus fasciculatus EfasUO2)
ATGTATTCGAGCTTCAACCAGCCCATAGGAAGCAGCATTTGGCCTGCATC
GCTTCGGCGACTCACACTAGGAGGAGACTTCAGGCAGTCACTGCAAGGAC
TGGGCTCTTGGATGCCCAACCTCGAAGTCTTACGTGTTCTTGACTGGGAG
CGTGATGCAGACGACGAAATCGTTTCAAGCCACGATATCCTTCTCCGCGG
AATCGAATGGCCAAAGGGCCTTCGTGAGCTGACCGTGTTCGATCACTCGC
GTTTAGATGGGGTTGTAATTCCTTCAACTGTAAAGGTCTATCGTCCAAAA
TTGTATATTTGA
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