mRNA_E_fasciculatus_S2_contig7162.15339.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7162.15339.1
Unique NamemRNA_E_fasciculatus_S2_contig7162.15339.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7162.15339.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G3_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 3.600e-44
Identity = 86/111 (77.48%), Postives = 95/111 (85.59%), Query Frame = 1 
Query:   10 GGQALKQRQAV-TETVDGFFERAQKRARAAGNEVVTQGQLAEALELLKEIHTEYDELHREHDATLRRIQRVVDRITRKLAAVGDDAIPQDELRGILALHDELLCERDADNR 339
            GG ALKQRQAV TETVD F ERAQ+RA AAGN+VVT GQLAEA+E LKE+H++YDELHREHDA L R QR VDRITRKLAAV +D +PQDELR +LALHDELL ER ADNR
Sbjct:  168 GGLALKQRQAVVTETVDDFLERAQERAPAAGNDVVTLGQLAEAVEPLKEVHSKYDELHREHDAKLGRFQRAVDRITRKLAAVSNDLVPQDELREMLALHDELLRERSADNR 278
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BLAST of mRNA_E_fasciculatus_S2_contig7162.15339.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC16_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 4.780e-44
Identity = 86/110 (78.18%), Postives = 94/110 (85.45%), Query Frame = 1 
Query:   10 GGQALKQRQAVTETVDGFFERAQKRARAAGNEVVTQGQLAEALELLKEIHTEYDELHREHDATLRRIQRVVDRITRKLAAVGDDAIPQDELRGILALHDELLCERDADNR 339
            GG ALKQRQAVTETVD F ERAQ+RA AA N+VVT GQLAEA+ELLK+ H++Y+ELHREHDA L R QR VDRITRKLAAV DD +PQDELR ILALHDELL ER ADNR
Sbjct:  283 GGLALKQRQAVTETVDDFLERAQERAPAADNDVVTLGQLAEAVELLKDEHSQYNELHREHDAKLGRFQRAVDRITRKLAAVSDDLVPQDELREILALHDELLRERSADNR 392
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BLAST of mRNA_E_fasciculatus_S2_contig7162.15339.1 vs.
Match: Leucine (rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 4.860e-38
Identity = 83/111 (74.77%), Postives = 93/111 (83.78%), Query Frame = 1 
Query:   10 GGQALKQRQAVTET-VDGFFERAQKRARAAGNEVVTQGQLAEALELLKEIHTEYDELHREHDATLRRIQRVVDRITRKLAAVGDDAIPQDELRGILALHDELLCERDADNR 339
            GG ALKQRQAVTET +D F ERAQ+RA AAGN+VVT GQLAEA+ELLKE+H++ DELHREHDA L R Q  VDRITRKLAAV +D +PQ+ELR ILALHDELL ER A NR
Sbjct:  851 GGLALKQRQAVTETALDDFLERAQERAPAAGNDVVTLGQLAEAVELLKEVHSKNDELHREHDAKLTRFQGAVDRITRKLAAVSNDLVPQNELREILALHDELLRERSAINR 961
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BLAST of mRNA_E_fasciculatus_S2_contig7162.15339.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 3.760e-36
Identity = 79/108 (73.15%), Postives = 88/108 (81.48%), Query Frame = 1 
Query:   19 ALKQRQAVTET-VDGFFERAQKRARAAGNEVVTQGQLAEALELLKEIHTEYDELHREHDATLRRIQRVVDRITRKLAAVGDDAIPQDELRGILALHDELLCERDADNR 339
            ALKQRQAVTET VD F ERAQ+RA AAGN+VVT GQL EA+ELLKE+H++YDELHREHDA L R QR VDRITRK     +D +PQ+ELR ILALHDELL ER A NR
Sbjct:  877 ALKQRQAVTETAVDDFLERAQERAPAAGNDVVTLGQLTEAVELLKEVHSKYDELHREHDAKLSRFQRAVDRITRKCTLESNDLVPQNELREILALHDELLRERSAINR 984
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BLAST of mRNA_E_fasciculatus_S2_contig7162.15339.1 vs.
Match: Leucine (Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 2.450e-35
Identity = 76/110 (69.09%), Postives = 89/110 (80.91%), Query Frame = 1 
Query:   10 GGQALKQRQAVTETVDGFFERAQKRARAAGNEVVTQGQLAEALELLKEIHTEYDELHREHDATLRRIQRVVDRITRKLAAVGDDAIPQDELRGILALHDELLCERDADNR 339
            GGQAL+QRQAVTE VD F ER+Q+RA AAGN+VVT GQLAEA+ELLKE+ +++DELHREHDATL R+QR V +ITRK   + D  +PQDELR  LALHDELL E  A NR
Sbjct: 1084 GGQALQQRQAVTERVDDFLERSQERAPAAGNDVVTLGQLAEAVELLKEVLSKHDELHREHDATLSRVQRAVCKITRKSETMSDGLVPQDELRETLALHDELLRELGAKNR 1193
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7162.15339.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.090e-13
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:   85 ARAAGNEVVTQGQLAEALELLKEIHTEYDELHREHDATLRRIQRVVDRITRK 240
            A AA N+VVT GQ+AEA+ELLKE+H +YDELHREHDA L R QR +D+I RK
Sbjct:   15 APAASNDVVTLGQVAEAVELLKEVHCKYDELHREHDAKLSRFQRTIDKIGRK 66
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7162.15339.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Uncharacterized3.600e-4477.48protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.780e-4478.18protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Leucine4.860e-3874.77rich repeat protein n=1 Tax=Ectocarpus siliculosus... [more]
Putative3.760e-3673.15Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
Leucine2.450e-3569.09Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus... [more]
Uncharacterized1.090e-1369.23protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7162contigE_fasciculatus_S2_contig7162:3118..4596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score152.5
Seed ortholog evalue1.2e-34
Seed eggNOG ortholog2880.D7FUA2
Model size379
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons3
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
Cds size342
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842378.8353598-UTR-E_fasciculatus_S2_contig7162:3117..31541696842378.8353598-UTR-E_fasciculatus_S2_contig7162:3117..3154Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7162 3118..3154 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842378.8499753-CDS-E_fasciculatus_S2_contig7162:3154..32551696842378.8499753-CDS-E_fasciculatus_S2_contig7162:3154..3255Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7162 3155..3255 -
1696842378.8611073-CDS-E_fasciculatus_S2_contig7162:3826..39821696842378.8611073-CDS-E_fasciculatus_S2_contig7162:3826..3982Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7162 3827..3982 -
1696842378.8703024-CDS-E_fasciculatus_S2_contig7162:4511..45961696842378.8703024-CDS-E_fasciculatus_S2_contig7162:4511..4596Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7162 4512..4596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7162.15339.1prot_E_fasciculatus_S2_contig7162.15339.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7162 3155..4596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7162.15339.1

>prot_E_fasciculatus_S2_contig7162.15339.1 ID=prot_E_fasciculatus_S2_contig7162.15339.1|Name=mRNA_E_fasciculatus_S2_contig7162.15339.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=114bp
MTEGGQALKQRQAVTETVDGFFERAQKRARAAGNEVVTQGQLAEALELLK
EIHTEYDELHREHDATLRRIQRVVDRITRKLAAVGDDAIPQDELRGILAL
HDELLCERDADNR*
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mRNA from alignment at E_fasciculatus_S2_contig7162:3118..4596-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7162.15339.1 ID=mRNA_E_fasciculatus_S2_contig7162.15339.1|Name=mRNA_E_fasciculatus_S2_contig7162.15339.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1479bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7162:3118..4596- (Ectocarpus fasciculatus EfasUO2)
ATGACAGAGGGAGGGCAGGCGTTGAAGCAGCGGCAAGCTGTCACCGAGAC
AGTGGATGGCTTTTTCGAGAGGGCTCAAAAGAGAGGTGAATCCATAGTGC
ACAATGCTTGTGTACGGAGTGGGTTTGCGACTCTTCCGCGTCGTTGTGCG
TTAGCTGTGTGTGTGATGGCTTCGAGTCCAAGATTTGTGCCACGTACTAT
GTAGACGGGACTACGGGATCATAGCCTCGTTGCTATGGAAAGAGCAAACG
CCGGACTGGCACGAACTTCATCATATACCGATTGTGTCTGAGTGAAAATT
AAATCGCCTTGGCGAATCTGGCGAATCCTGATGTCGTGGAATGCTTGGTG
CAGGTTTCGTCACGATCGCTAGCCGGCTCTTCCCTCATGTAGGATAGTTT
GGTTACACTTTGTTTTGCATTCCTGCTCACGTGGAACTTGGCGCCGAAAC
AGTGTTTTCCCTAATTTTTACCGGTCCGAACTTGCGATGCCCCGTCCTGA
ACATCACGTATGCATTGACACGTTCATGTCAAAGACACCAATGGTACGCT
CTCTTGCTTGCTCCTTTGGCTGTGTTGCGTTTGCCTACGCGATGGGGCGT
TGTTCGTACATCAGCAAGGGCTGCGGGCAATGAAGTGGTGACCCAGGGTC
AACTGGCGGAGGCCCTGGAACTCCTCAAGGAAATCCATACCGAGTACGAT
GAGCTGCATCGCGAGCATGATGCCACCCTGAGGCGCATTCAGAGGGTCGT
TGATAGAATCACCCGCAAATGTACGTCAGCTCGTTTCTTACGCTGTTTGG
TTAGAAGCGCTGGACAAGGGTCTCGTGTCAGCGTGGTTGGAGACAATGAA
CCTCCACATTTGGCTGCTTGCGTTTTGGGCCCTGTCTCGTAAGCGCTTGT
CCGTAAAGTTGTCCGCGGGCTTTCCGATATCTCTTGCGTGCGGAATACAT
GTGCTCTCGTCGCAGCTCCGCAGCAAGGCAAACAACCAACCCAAACGTTG
GTAGTTCGTTTTTCATCTCAGACCCTACCTCTCTCTATTGCGCAAACTCT
CAATCACTCGCCTGAAATCGTTGCCTCTAACGGTGTTAGGCTGTGGCGCC
TGGACAAGATGTCGTAGTTGGACTTGTTTTGTGGAACATTGCAATGTGGA
CTAGTCAACATGAATCTGTTGTGGCTAGTCTGATGGGTGCTTGATCATCC
CGGCGACCTTGGCATTCACGTTTGTCTCCAAACACTTGGTTTCATTTGCG
CTTGAACCCTTCGTGTCACTTAATTTCGTGCGTGCCGTGCCTCGTCTTCC
TGCTTATGGTTGGGAACTGCATGGCGCATTGTTTGCATCAGTGGCGGCTG
TGGGCGACGACGCGATCCCCCAGGACGAGCTGAGAGGCATCTTGGCACTT
CACGACGAGCTACTTTGCGAACGTGATGCTGACAACAGATAGCTTCAGAG
GATGGACGTCCAGAACAACGAATCATATG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7162:3118..4596-

>mRNA_E_fasciculatus_S2_contig7162.15339.1 ID=mRNA_E_fasciculatus_S2_contig7162.15339.1|Name=mRNA_E_fasciculatus_S2_contig7162.15339.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=342bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7162:3118..4596- (Ectocarpus fasciculatus EfasUO2)
ATGACAGAGGGAGGGCAGGCGTTGAAGCAGCGGCAAGCTGTCACCGAGAC
AGTGGATGGCTTTTTCGAGAGGGCTCAAAAGAGAGCAAGGGCTGCGGGCA
ATGAAGTGGTGACCCAGGGTCAACTGGCGGAGGCCCTGGAACTCCTCAAG
GAAATCCATACCGAGTACGATGAGCTGCATCGCGAGCATGATGCCACCCT
GAGGCGCATTCAGAGGGTCGTTGATAGAATCACCCGCAAATTGGCGGCTG
TGGGCGACGACGCGATCCCCCAGGACGAGCTGAGAGGCATCTTGGCACTT
CACGACGAGCTACTTTGCGAACGTGATGCTGACAACAGATAG
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