mRNA_E_fasciculatus_S2_contig7139.15315.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7139.15315.1
Unique NamemRNA_E_fasciculatus_S2_contig7139.15315.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7139.15315.1 vs.
Match: Photolyase (1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU09_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.530e-21
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 LGPQVSVVRLDGGHCPHHEVAADVCAAVSGFVQRVEEGEPAFAKPAV 141
            LGPQVSVVRLDGGHCPHHEVAADVCAA+SGFVQRVEEGEPA  KPA+
Sbjct:  393 LGPQVSVVRLDGGHCPHHEVAADVCAALSGFVQRVEEGEPALVKPAL 439
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BLAST of mRNA_E_fasciculatus_S2_contig7139.15315.1 vs.
Match: Photolyase/cryptochrome (alpha/beta domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA65_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.790e-21
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 LGPQVSVVRLDGGHCPHHEVAADVCAAVSGFVQRVEEGEPAFAKPAV 141
            LGPQVSVVRLDGGHCPHHEVAADVCAA+SGFVQRVEEGEPA  KPA+
Sbjct:  660 LGPQVSVVRLDGGHCPHHEVAADVCAALSGFVQRVEEGEPALVKPAL 706
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7139.15315.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Photolyase2.530e-2191.491 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=... [more]
Photolyase/cryptochrome3.790e-2191.49alpha/beta domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7139contigE_fasciculatus_S2_contig7139:6130..6702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score96.3
Seed ortholog evalue4.2e-18
Seed eggNOG ortholog2880.D7FU09
Model size199
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.regulation of endocannabinoid signaling pathway
EggNOG OGsCOG0596@1,KOG1454@2759
Cds size144
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842376.0705328-UTR-E_fasciculatus_S2_contig7139:6129..61841696842376.0705328-UTR-E_fasciculatus_S2_contig7139:6129..6184Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7139 6130..6184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842376.083264-CDS-E_fasciculatus_S2_contig7139:6184..62841696842376.083264-CDS-E_fasciculatus_S2_contig7139:6184..6284Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7139 6185..6284 -
1696842376.0938778-CDS-E_fasciculatus_S2_contig7139:6658..67021696842376.0938778-CDS-E_fasciculatus_S2_contig7139:6658..6702Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7139 6659..6702 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7139.15315.1prot_E_fasciculatus_S2_contig7139.15315.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7139 6185..6702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7139.15315.1

>prot_E_fasciculatus_S2_contig7139.15315.1 ID=prot_E_fasciculatus_S2_contig7139.15315.1|Name=mRNA_E_fasciculatus_S2_contig7139.15315.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=48bp
LGPQVSVVRLDGGHCPHHEVAADVCAAVSGFVQRVEEGEPAFAKPAV*
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mRNA from alignment at E_fasciculatus_S2_contig7139:6130..6702-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7139.15315.1 ID=mRNA_E_fasciculatus_S2_contig7139.15315.1|Name=mRNA_E_fasciculatus_S2_contig7139.15315.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=573bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7139:6130..6702- (Ectocarpus fasciculatus EfasUO2)
CTCGGCCCTCAGGTGTCGGTGGTTCGCTTGGACGGGGGACACTGGTGAGA
TAACCGTGTTTCTGCCGCATGACAACGAACGTTGCTGCTGTTAGGGGCAC
AGGCATTTAGGTTAGTGCGCTGTGGGACTGGAGGCAGCAGGTGGTGCACT
TCCCGCCCCGTGCCTGACCGTGGTTGATCACTTCTGGTGGAATCCTTCTC
GATTCACTCTCGAGTTGAGCTAGTCGCCGCACGCGTGCCCCAAAACACAG
ATCGTCTCCTCTTCTCATCGTACCGCCTGTTTGTAAACCTTGACCTTGCT
TGAGCCTTGTCCACGTGTGCCCCTACCGCCTGTATTTCTTGCTCATCGTT
GTTGTTTTGTTTGGGTTGCCTACTGTAACGCCACCCCCTCTCCCATGCTT
TGCATCCGTTCCACGCAGCCCTCACCATGAGGTAGCGGCCGACGTGTGCG
CGGCTGTGTCTGGGTTCGTACAGAGGGTGGAAGAGGGAGAACCAGCGTTC
GCCAAGCCTGCTGTATGAAGACTTGTGTCCGCAGGGGCTGCCCGCCTGCA
TGGTCCTAAGAAGACCTTGTGTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7139:6130..6702-

>mRNA_E_fasciculatus_S2_contig7139.15315.1 ID=mRNA_E_fasciculatus_S2_contig7139.15315.1|Name=mRNA_E_fasciculatus_S2_contig7139.15315.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=144bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7139:6130..6702- (Ectocarpus fasciculatus EfasUO2)
CTCGGCCCTCAGGTGTCGGTGGTTCGCTTGGACGGGGGACACTGCCCTCA
CCATGAGGTAGCGGCCGACGTGTGCGCGGCTGTGTCTGGGTTCGTACAGA
GGGTGGAAGAGGGAGAACCAGCGTTCGCCAAGCCTGCTGTATGA
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