mRNA_E_fasciculatus_S2_contig7082.15252.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7082.15252.1
Unique NamemRNA_E_fasciculatus_S2_contig7082.15252.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7082.15252.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7082contigE_fasciculatus_S2_contig7082:4482..6312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1161
Hectar predicted targeting categoryother localisation
Exons2
Cds size594
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842368.982481-CDS-E_fasciculatus_S2_contig7082:4481..46841696842368.982481-CDS-E_fasciculatus_S2_contig7082:4481..4684Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7082 4482..4684 +
1696842368.9954119-CDS-E_fasciculatus_S2_contig7082:5356..57471696842368.9954119-CDS-E_fasciculatus_S2_contig7082:5356..5747Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7082 5357..5747 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842369.006383-UTR-E_fasciculatus_S2_contig7082:5747..63121696842369.006383-UTR-E_fasciculatus_S2_contig7082:5747..6312Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7082 5748..6312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7082.15252.1prot_E_fasciculatus_S2_contig7082.15252.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7082 4482..5747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7082.15252.1

>prot_E_fasciculatus_S2_contig7082.15252.1 ID=prot_E_fasciculatus_S2_contig7082.15252.1|Name=mRNA_E_fasciculatus_S2_contig7082.15252.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=198bp
HRHRRCAVWPPSPSRGRPSPPRGPLLPSPSSPGSSRRTRLPSRPPPPPRL
RRRSSPLSGSSRNSYLTSRTVGRHVLRLLLVETRHHSARRGHLAWRGLLV
AHDLLGRQVFLVLEGIAKVHGADYTSGRSEETGKVKVGIDGWMRRDIAPR
RAMRLFAVKTRKALADEDGYSPPSLPGNRRNCCCQSVDAPLSVGASM*
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mRNA from alignment at E_fasciculatus_S2_contig7082:4482..6312+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7082.15252.1 ID=mRNA_E_fasciculatus_S2_contig7082.15252.1|Name=mRNA_E_fasciculatus_S2_contig7082.15252.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1831bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7082:4482..6312+ (Ectocarpus fasciculatus EfasUO2)
CACCGCCATCGGCGCTGCGCTGTCTGGCCTCCTTCACCATCTCGAGGTCG
GCCGTCGCCGCCTCGAGGGCCTCTTCTGCCGTCGCCTTCTTCGCCCGGGT
CTTCGCGGCGGACAAGGCTTCCCTCGCGGCCGCCTCCTCCTCCGCGGCTC
CGGCGACGGTCTTCCCCTCTGTCAGGCTCGTCCAGGAATTCTTACCTGAC
ATCGTGCATAAACGGCGCGTGGTACACGCGCAATTAACGAGAGTTAGGAG
GGCAACACCACCAAACGACGTTTGCACAACGATCCGTTGCTAAACGACGT
TTGCACAACGATCCGAGCCAACGGATTGATAAAAACAGTGGTGCCGTGGC
CACAAGACGACATCGTTGGATGCACAAAACACGTGGGTACTGAAAAACTG
TATCAAAACACAGACATTCAAGACAACGTCCAGTCCGTCGCCGCCGCCGC
CACCAACAACAACAACGACAAAGAGCTAAACCTGCAAGACCAACGACAAC
ATCGTCACATGCAACCCCGACACGACGACAACCACAACAGAACAACCAAA
CAAGAAATCGGCCATCACCACCACGAGCAGGCACCGAGAGCAGCAACAGC
AAACACCAACGAAAGACGACGGCCCACCTCCCTTCCGCCCTTCTCCAAGC
AGCGCGAGCGGCATCGGCATCGGCAGCGGCGACAGCGGTGGCGACAGCGG
TGGCGACATACCAAAAATAGCAGGAGGAAAGGGCGGGAGGAGATGAGACT
AAACAGTCAAATGTTCGGGGTAGGTGCAAAGCACATAGCGGCAGCAGCAC
CAACGGCACCACCACCACCAACGACATCAACACCATACCAAGACCGCCAT
CAACGGGAATTTACAGGAAAGATAGTCGTACCGTTGGCCGCCATGTTCTC
CGCCTTCTCCTGGTCGAGACGCGCCACCACAGCGCTCGCCGCGGCCACCT
CGCGTGGAGAGGTCTTCTTGTCGCCCACGATCTTCTTGGCCGCCAAGTAT
TCCTCGTACTTGAGGGCATTGCCAAAGTGCATGGCGCCGACTACACCAGT
GGACGAAGCGAGGAGACAGGGAAAGTGAAAGTGGGCATTGATGGTTGGAT
GAGGCGAGATATAGCACCAAGGCGGGCCATGAGGTTGTTCGCGGTCAAGA
CCCGCAAAGCGCTTGCAGACGAGGATGGGTATTCCCCCCCGTCTTTGCCC
GGAAACCGACGCAATTGCTGCTGTCAAAGCGTAGACGCCCCGCTCTCCGT
GGGAGCGAGTATGTGAAGAATACACCAAGGCTCGAGGTGTGGGGTGGCGG
CGCCCCGTCAACAACAACAACACCTCGCTGACCTATCAGTCCTGCCGCTT
GGAAACAAACATGTGTACGACGAATGGCACACCCACCGGACAAATCCCAG
CGACGGTACTGCGCCTCGAGCTTGGCGGAGATCTCGTCTACTTCCAACGC
CACCTTGCCCACGGCCTTGGCGTTGCCCCGCGTCCGAAGCGCCGCCCCTA
GCCTCGCCACTTCCTCGCGCCTCTCGCGAAGCGCCGTCTCCCACTCCCCG
CCCTTCTTGGCTTTTGTTGTTGGCGCCGCCATGCCTCCCTGATCGCCAAG
GTTGGAACAACCACGATGTTTTTCGAGGCAGGAAGCGGACAAACAAACGG
AAAATCAGTTCTGTTTCTTTTCTGGGAGATGGGGTGGGGCGATGCCGAAA
GATGGATGCAGACGTTCACTCGTACGGTGTGGGTCCAATCACTTTGGCCC
TCTACGTCTTGTCAGGCAGAGCGAGAAAAAAAAGGGGTTACGCAAGTGTA
TGAAGCGTATTTTGGTTGAGAGCTAGGCTAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7082:4482..6312+

>mRNA_E_fasciculatus_S2_contig7082.15252.1 ID=mRNA_E_fasciculatus_S2_contig7082.15252.1|Name=mRNA_E_fasciculatus_S2_contig7082.15252.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=594bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7082:4482..6312+ (Ectocarpus fasciculatus EfasUO2)
CACCGCCATCGGCGCTGCGCTGTCTGGCCTCCTTCACCATCTCGAGGTCG
GCCGTCGCCGCCTCGAGGGCCTCTTCTGCCGTCGCCTTCTTCGCCCGGGT
CTTCGCGGCGGACAAGGCTTCCCTCGCGGCCGCCTCCTCCTCCGCGGCTC
CGGCGACGGTCTTCCCCTCTGTCAGGCTCGTCCAGGAATTCTTACCTGAC
ATCTCGTACCGTTGGCCGCCATGTTCTCCGCCTTCTCCTGGTCGAGACGC
GCCACCACAGCGCTCGCCGCGGCCACCTCGCGTGGAGAGGTCTTCTTGTC
GCCCACGATCTTCTTGGCCGCCAAGTATTCCTCGTACTTGAGGGCATTGC
CAAAGTGCATGGCGCCGACTACACCAGTGGACGAAGCGAGGAGACAGGGA
AAGTGAAAGTGGGCATTGATGGTTGGATGAGGCGAGATATAGCACCAAGG
CGGGCCATGAGGTTGTTCGCGGTCAAGACCCGCAAAGCGCTTGCAGACGA
GGATGGGTATTCCCCCCCGTCTTTGCCCGGAAACCGACGCAATTGCTGCT
GTCAAAGCGTAGACGCCCCGCTCTCCGTGGGAGCGAGTATGTGA
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