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Homology
BLAST of mRNA_E_fasciculatus_S2_contig708.15247.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLI1_ECTSI) HSP 1 Score: 153 bits (386), Expect = 5.430e-42 Identity = 92/116 (79.31%), Postives = 98/116 (84.48%), Query Frame = 1
Query: 79 MRTVQVAATFLAIYRVAGFVIPVSLPLRPAAVSSPTSSSQPATHVVRRQQQPPFEARHNTPVLMASSRGGRGEEE-VEEVEEKGGIEPKYLAAIAVVLFAALYDLFVTHEGRLWEL 423
MRTVQVAA FLAIYRV+GFVIP SL RPAA S PTSS QPATHV ++Q PF+ARH PVLMAS GGRGEEE V++VEEKGGIEPKYLAAI VVLFAALYDLFVTH GRLWEL
Sbjct: 1 MRTVQVAAAFLAIYRVSGFVIPASLQSRPAA-SIPTSS-QPATHVEHVRRQQPFDARH-APVLMASQ-GGRGEEEEVDDVEEKGGIEPKYLAAIGVVLFAALYDLFVTHGGRLWEL 112
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1260 |
| Hectar predicted targeting category | signal peptide |
| Exons | 2 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-17_001100.1 |
| Cds size | 348 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842368.6246462-UTR-E_fasciculatus_S2_contig708:21517..21595 | 1696842368.6246462-UTR-E_fasciculatus_S2_contig708:21517..21595 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig708 21518..21595 + |
| 1696842368.6676035-UTR-E_fasciculatus_S2_contig708:22737..23571 | 1696842368.6676035-UTR-E_fasciculatus_S2_contig708:22737..23571 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig708 22738..23571 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842368.635029-CDS-E_fasciculatus_S2_contig708:21595..21858 | 1696842368.635029-CDS-E_fasciculatus_S2_contig708:21595..21858 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig708 21596..21858 + |
| 1696842368.6478808-CDS-E_fasciculatus_S2_contig708:22652..22737 | 1696842368.6478808-CDS-E_fasciculatus_S2_contig708:22652..22737 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig708 22653..22737 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig708.15247.1 >prot_E_fasciculatus_S2_contig708.15247.1 ID=prot_E_fasciculatus_S2_contig708.15247.1|Name=mRNA_E_fasciculatus_S2_contig708.15247.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=116bp
MRTVQVAATFLAIYRVAGFVIPVSLPLRPAAVSSPTSSSQPATHVVRRQQ
QPPFEARHNTPVLMASSRGGRGEEEVEEVEEKGGIEPKYLAAIAVVLFAA
LYDLFVTHEGRLWEL* back to topmRNA from alignment at E_fasciculatus_S2_contig708:21518..23571+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig708.15247.1 ID=mRNA_E_fasciculatus_S2_contig708.15247.1|Name=mRNA_E_fasciculatus_S2_contig708.15247.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2054bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig708:21518..23571+ (Ectocarpus fasciculatus EfasUO2)
AGCTCGCGGGGGCTACTGCTGTAAGGTAGCGAGTGTAGTCCAGCGTGCAC
GTCTCTGGATTTCGATTCGGTTATAACTATGCGTACGGTCCAAGTTGCTG
CGACCTTCCTAGCGATCTACAGGGTCGCGGGCTTTGTCATTCCAGTATCA
CTTCCATTGAGACCCGCTGCTGTAAGCAGTCCCACATCATCGTCACAGCC
GGCGACACATGTAGTACGCAGGCAGCAGCAACCGCCGTTTGAAGCTCGCC
ACAACACGCCAGTTTTGATGGCATCCTCCCGGGGTGGCAGAGGAGAGGAG
GAGGTGGAGGAGGTCGAGGAGAAGGGCGGAATAGAGCCCAAGTGAGTGGG
GCGTTGAGGCTCTAAATTGGCGATACGGTCAGCTATTTGGCAAACGATGT
GGCAGCGAAGTACGGACTCTGCCCCCGTGCTGCGAAAGGAACTCCACCTA
GATTGTGTCAGTGTGCATCATAAGCAGTCAGATAGCAGCCTTGCCAATTT
TGTGACATGTCACTCCCATCATGTCGACTTTAATGTCCCGGGGACGGATT
TGCTGCAAACAGGAGGTAGTTGCCCTGGGTGCGCCGGATGCGCTGGCGTG
ATGACTCATTCTGCGCTCAAAACTAAACTATTTCGCACATCGCTGAACGC
GCGTACGCCGATGTGCCGCAACCCTCGCTCCTGACTTTGGGGAAACCAAC
AGAGATATACATTGCGTGCAAATCGACCCCTTAACTTCTTGTTTTGCTCG
TTGGGTGCCTGTTGACTGTATGCACGTATTTGGCACTCAAGCACCGATTG
TACGACCGTCATAAGTCGTTTGTCTGTTTCCTTCGCGTACTGAGCCGTTG
AAAGCATAGTTTCTGCCGAGCCGATCAACTTGTACAATAAACAGCAGTAG
GACCGCACGGACTGACAAGTGTCCTCCCAGAGTATCCTTGACGCACTGCC
TGTACCGAAGGCGCTACAGCAGCGCGACTGGACATCGAGAAACAGGACAT
ATACGACGCCGCTTGGTGGCTGCGCTGCTGCTACACCATGCCCTCTCCGG
GCCCCTGCTTGTTTGTAAATCGCGCTCCCTTGTCGTACATGAGAGCCGGC
GGTCCAAATCGTTCTCTCGTTTCTTTCGTCTTCAGGTACCTCGCTGCGAT
CGCAGTGGTCCTGTTCGCCGCGCTGTACGACTTGTTCGTCACCCACGAGG
GTCGGCTGTGGGAGCTCTAAATAGCGCATTCCAGCCGCTGCAGCTTTCTC
TTGGGGGAGCCTAGCGGGCAGTAGACGGACCTGCTGATTGCGCAGTTACG
CTATGTACGCATGACGTGCGCCGATAATGCTTTTGTTTCCCGGGGGACGA
GGGTGCTCTTCCCTGGCTTGGTATGGAATGCTCTGGGTTGAGGAACGGAA
GAAATCGTTTCGAGCACACCGCAAGAAAGCTGGTCAATGTGTATTGCCTC
ATTTTGATGCCCGAGAGAGGTTTGCAACTGACGGTGCGGAGGACGTTGTA
CTAGGGAGTTTGGCTGCTGGAGGCTGCAAATGTGGGGAATGGACCAACAG
CAGTCCATGTGAACGTGCATTTTAGGCGCCCATCGTTTAGTTTATTTTTA
ATATTGAAGAGCGCAAAAATGTGTCCGCTTCGACAGCAGGATTCCGTGCA
CGATCAATTTCGGCGTTCTTGTGTAGTTCCTCTCTGTATTTTGAGCGGTT
GTGCAACAGTCAATGCAGCACACCAGATTTGGAGCACCCTCTTCTGGCCC
GCTGGAAATCGTTGGTTGCGCCAATGGTTCTTGAGGTAACAGGAGTCGAG
TACCATCGCTCTCGGAGTGTCCGCTGGGCAAAGCGGCTTTAACATCGCAC
GTGATACCGTACTGTACCGATGAAGATGAAGACCCTGCCTGATCATTTCT
CGCGTGAGGCGCGAGATCGCAAGCAAACGGAATGTCTTCGCGTAGATGTG
CACGTGCGGAATGCAACACACCTTTGACACACTCACCAGGCTTCTTTAAG
GGGGAAAACTTTAGCCTGTAGGTGCCGCTGATTTTCCTGTTGGCCGAAAT
TGCT back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig708:21518..23571+ >mRNA_E_fasciculatus_S2_contig708.15247.1 ID=mRNA_E_fasciculatus_S2_contig708.15247.1|Name=mRNA_E_fasciculatus_S2_contig708.15247.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=348bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig708:21518..23571+ (Ectocarpus fasciculatus EfasUO2)
ATGCGTACGGTCCAAGTTGCTGCGACCTTCCTAGCGATCTACAGGGTCGC
GGGCTTTGTCATTCCAGTATCACTTCCATTGAGACCCGCTGCTGTAAGCA
GTCCCACATCATCGTCACAGCCGGCGACACATGTAGTACGCAGGCAGCAG
CAACCGCCGTTTGAAGCTCGCCACAACACGCCAGTTTTGATGGCATCCTC
CCGGGGTGGCAGAGGAGAGGAGGAGGTGGAGGAGGTCGAGGAGAAGGGCG
GAATAGAGCCCAAGTACCTCGCTGCGATCGCAGTGGTCCTGTTCGCCGCG
CTGTACGACTTGTTCGTCACCCACGAGGGTCGGCTGTGGGAGCTCTAA back to top
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