mRNA_E_fasciculatus_S2_contig708.15245.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig708.15245.1
Unique NamemRNA_E_fasciculatus_S2_contig708.15245.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig708.15245.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK53_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.940e-17
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 2 
Query:   23 MPGAAAADRRLLMEVEKGNLSGVKKLLAGGANVNGSRELEHPP 151
            MPGAAA DRRLLMEVEKGNLSGVKKLLAGGANV+GSRELE+PP
Sbjct:    1 MPGAAAGDRRLLMEVEKGNLSGVKKLLAGGANVDGSRELEYPP 43
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BLAST of mRNA_E_fasciculatus_S2_contig708.15245.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M4_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.240e-15
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 SRQQLRDHAWSCGCRPAAADGSGKGEFEWRQEIARGRSKRERIARAGTSPD 153
            S  + RDHAW  GCRPAAADGSG+GEFEW QEIARGRSKR RIARA   P+
Sbjct:   52 SLHRFRDHAWCRGCRPAAADGSGEGEFEWSQEIARGRSKRGRIARAAIPPN 102
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig708.15245.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.940e-1793.02protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.240e-1574.51protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig708contigE_fasciculatus_S2_contig708:3481..3634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score79.7
Seed ortholog evalue4.3e-13
Seed eggNOG ortholog2880.D7G4M4
Model size154
KEGG koko:K10324,ko:K21435
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001654,GO:0001736,GO:0001737,GO:0001738,GO:0001745,GO:0002009,GO:0002165,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0007163,GO:0007164,GO:0007275,GO:0007399,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008150,GO:0008544,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009913,GO:0009987,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0030855,GO:0032501,GO:0032502,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035315,GO:0035316,GO:0035317,GO:0042067,GO:0044424,GO:0044464,GO:0048513,GO:0048563,GO:0048569,GO:0048592,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0060429,GO:0060562,GO:0071840,GO:0090596,GO:0120036
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Cds size153
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842368.358785-CDS-E_fasciculatus_S2_contig708:3481..36341696842368.358785-CDS-E_fasciculatus_S2_contig708:3481..3634Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig708 3482..3634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig708.15245.1prot_E_fasciculatus_S2_contig708.15245.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig708 3482..3634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig708.15245.1

>prot_E_fasciculatus_S2_contig708.15245.1 ID=prot_E_fasciculatus_S2_contig708.15245.1|Name=mRNA_E_fasciculatus_S2_contig708.15245.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=51bp
SRQQLRDHAWSCGCRPAAADGSGKGEFEWRQEIARGRSKRERIARAGTSP
D
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mRNA from alignment at E_fasciculatus_S2_contig708:3481..3634-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig708.15245.1 ID=mRNA_E_fasciculatus_S2_contig708.15245.1|Name=mRNA_E_fasciculatus_S2_contig708.15245.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=154bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig708:3481..3634- (Ectocarpus fasciculatus EfasUO2)
AGTCGCCAACAGTTGCGTGACCATGCCTGGAGCTGCGGCTGCCGACCGGC
GGCTGCTGATGGAAGTGGAAAAGGGGAATTTGAGTGGCGTCAAGAAATTG
CTCGCGGGCGGAGCAAACGTGAACGGATCGCGCGAGCTGGAACATCCCCC
GATT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig708:3481..3634-

>mRNA_E_fasciculatus_S2_contig708.15245.1 ID=mRNA_E_fasciculatus_S2_contig708.15245.1|Name=mRNA_E_fasciculatus_S2_contig708.15245.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=153bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig708:3481..3634- (Ectocarpus fasciculatus EfasUO2)
AGTCGCCAACAGTTGCGTGACCATGCCTGGAGCTGCGGCTGCCGACCGGC
GGCTGCTGATGGAAGTGGAAAAGGGGAATTTGAGTGGCGTCAAGAAATTG
CTCGCGGGCGGAGCAAACGTGAACGGATCGCGCGAGCTGGAACATCCCCC
GAT
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