mRNA_E_fasciculatus_S2_contig7034.15199.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7034.15199.1
Unique NamemRNA_E_fasciculatus_S2_contig7034.15199.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7034.15199.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7034contigE_fasciculatus_S2_contig7034:2680..6504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size365
Hectar predicted targeting categoryother localisation
Exons5
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842363.9870622-CDS-E_fasciculatus_S2_contig7034:2679..27521696842363.9870622-CDS-E_fasciculatus_S2_contig7034:2679..2752Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7034 2680..2752 +
1696842363.9979894-CDS-E_fasciculatus_S2_contig7034:3663..37351696842363.9979894-CDS-E_fasciculatus_S2_contig7034:3663..3735Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7034 3664..3735 +
1696842364.0080304-CDS-E_fasciculatus_S2_contig7034:4366..44381696842364.0080304-CDS-E_fasciculatus_S2_contig7034:4366..4438Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7034 4367..4438 +
1696842364.018133-CDS-E_fasciculatus_S2_contig7034:5162..52341696842364.018133-CDS-E_fasciculatus_S2_contig7034:5162..5234Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7034 5163..5234 +
1696842364.0280979-CDS-E_fasciculatus_S2_contig7034:6430..65041696842364.0280979-CDS-E_fasciculatus_S2_contig7034:6430..6504Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7034 6431..6504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7034.15199.1prot_E_fasciculatus_S2_contig7034.15199.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7034 2680..6504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7034.15199.1

>prot_E_fasciculatus_S2_contig7034.15199.1 ID=prot_E_fasciculatus_S2_contig7034.15199.1|Name=mRNA_E_fasciculatus_S2_contig7034.15199.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=121bp
GSIPKELGGLVNLDDLRLNDNELIGVMPAELGRLKTLRKLCLDGNGLTGS
IPEALGGLVNLEDLWLSNNNLRGSIPVELGDLVKLQELHLDDNKLTGTIP
RELGTLATLQKLNLSKNGLTG
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mRNA from alignment at E_fasciculatus_S2_contig7034:2680..6504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7034.15199.1 ID=mRNA_E_fasciculatus_S2_contig7034.15199.1|Name=mRNA_E_fasciculatus_S2_contig7034.15199.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3825bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7034:2680..6504+ (Ectocarpus fasciculatus EfasUO2)
GGTTCCATCCCGAAGGAGCTTGGGGGGCTGGTTAATCTGGACGACCTTCG
CCTCAATGACAACGAGCTCATAGGTAAGGGGGTTTTTGGTTTCCCGTGGG
TCGATCTTTGTTGTGTGGCCTGGAAACGTTGCTCGACCAAGAAGTAGGCG
GCGTTCCCGCCGGTTGTCTAGTTGGTGACCTCGCAGCTACCCGCTGGCAA
ACCATTTTTCCAATTTTTCTAGAGCGAAGAATGGCATTGGCGTTACATCG
CATTTTCAGTCGTGACGAAGCACACCTGGAGGTGGAAGATGCGGATAAGC
ACCTGCTGGTTTGCACAAATCTCCAAGCACCGCATGTAGAGTACAACATG
AGTTGGTTGTCGATGTCTGAATAAACTGGAGTTTATCGTGAAGGGAATAA
TTCGGAACATCCCCCAGATCGGCGAGTGCGCTTGGGTTCTTGTTGTGCTC
CCACGGAAGCGTGATGGTTCTCATGTCTTGGTTGGATTTTCTGAGGTCCC
GAACAAGAGGAACGTTTCAGAGACCTTGTCAGTATGGTATTCGAAGAGAG
ATATTGTGTTGTAGTACTGTAGCAGAGACACATTCGATACCGCGGAGGTT
TTGTTCCCGTGTGGTACGGAGGAAGTTTCCGTCCGTAGGCCATAGAAACT
ACAAAATCAAGGCAATCCGAAAGAAAGACAATACAGTGCAAAATTGATTA
TCCTCTCCACTCTTTTGTCGTCGTCCTGCGTATCCCCGGTTCGTGCGGGA
AGTATTCCATGTAGACTGTCGCCCGGAATAGATGGGACGATGAGCACACG
TCCGTTTTGCTTTTCCCTCCGCTGCATGCGCACGATGCAAATCATATGAC
TCTGTGTGCGAAATTATGGTGCCTACCGGTTGACCATTCATCGACTACGT
ATGGCGGCCTGACGCACTTGGTAGTCATAAATTGCCAGGTCTTTCGTAAC
ATTTCCCAAATGAATTTGCTATTCGGTCGTACAGGGGTGATGCCGGCGGA
ACTCGGGAGGCTCAAGACGCTGCGGAAACTATGCCTTGACGGGAATGGCT
TGACAGGTGACTACCGCCCTCGTTTGAGTGAATTGGTTACCATGTAGACG
TCCACCGTCGAAACCTCCTGAAGGTGCCTGGTGTAATGGGTGACAGTTTA
GTTTTGTTACTGTACGTATGTTTCCGACTTGGGTCAGCGAAGAGGGAGCC
CACCTTCCCGTTTTTCTTGCAGAAATGGAGATATCGGGTTTGAGTGGTGT
ATATTCAGTGCTCTCTTTGCACCAGGTTGTGACGTATGTAGCTGGGATGC
CATTGACTTGAGCGTAGCAAGATCTCTCCGAATTATTCCTGCACAATCGA
GGATCCCTTCCTTTACCGAGTACCTGACGATGATAGGTGTCTCGTCGTCT
AGGCAGCATTATTCGCTCGGTCACCGAGGGCTTCACACATGTCCTAGGAG
GGGCGGCCCTCGGTTGACATGTTGAACTATCATATCGCATCTTCTGACAG
CAGTTCCTATCGGGTTGGTGAACGTGAGGGTGTCGCTGCACAAGCGTCCA
AGGGTGTCGTGATATCGCTGCATATGCATTTGTGGATTTTACTCAACACG
ATGGCGACCGGTGTTGTGTTGGCCTGCAGAAGCAAACACGTTTCATTTAA
CACGATGGTGCTCGTCTACTGTCGGGTGTTGATGCAGGTTCCATCCCGGA
GGCGCTGGGGGGCCTTGTTAATCTGGAGGATCTTTGGCTCAGCAACAACA
ACCTCAGAGGTAAGGGTGTTTGTGCTCCCGTAGGTTGATCGTTGTTGTGT
GGCCCGGAGACGTTGCTCGGCGCCGAATCAGGTGGCGTTCCCATCGGTTG
TCGAGTTGTTGACCTCGTCGACCTACTGGCAACTAGGGTTCGAATGTTTC
CAGAGTAATGCATCCGGCATTGACGTTGGAACGGCCTCGGTCATGGCGGA
GCACACCTGAAAGTAGAAGATTCGGACAAGCACCTGCTCTTTTGCAGAAA
GAAATCTCTCAAGCACGGCATGAAACATACCATATGAGTTTATTATCTAA
GGCCAAGTAAACCGGAGTATATTGAGAAGAGTTGAGCTCCCAGATCCACG
AATGGATTTGGTTCGCTGTAGAAAACATTCGGCACCAGCATGTTCCCGAG
CTCCCTTGGCGTAAGGACCATGACGTTGATTTCCTATCATGTGTGTATCC
ACCCGAATTCAACCGATGAGGAGGTAGTTGCTGGTTTCGTCTGGGGCAAT
CGAGATTATCAACGGTTTTCCATGCATTCCTTTCTCGCATCCAGCTGCCC
CATTTTTTTTCGTGTCGTTCTGTTGCAAACAATCCATACTACAACGATGT
GTATAGACTGTATTTTGTGCGACCGACTCGCACACGCGAGGGGCATGTAT
TATTCAACACAGCGCATAAAATGGGTGCAATGTTGTCTAAGCGCATAAAA
TGGGTGCAATGCTGCTGTGGCTTGTATGTGCAGGATCTATCCCGGTAGAG
CTTGGGGACCTAGTGAAGCTGCAGGAGCTCCACCTCGATGACAACAAGCT
GACAGGTAAGGGTATTGGTACTCACGTTGATTGGTTGTCATGTGGCCGGG
GAAATGTGCTCGACGCACGAACAGATTGCGTTCGTTTCGCTGGTCCAGCT
GCTAATCTCGCTCACCCGCTGACAGGTAAGGTGCGGGTTCCAATATCTCC
GGATTCAAAAGACTTCGCCCTTGTGGTTGGAAGGCGTTTGATCGTGAGAT
GATGTTTACGGGGATCAAGAATCAGCTCAACCTTAACCTTCGTCGTGTTG
AATCTTGATTGCAAGCACCATAAGATGCGAACAACGATTCGGCTCATGAG
CTTTGTCGGTTCAACCGTATGGTCGGTGGGTCAAGTATGCCCGGAAGGAT
GTGTAGTAGACGTGTAGACTGGCACCCAGAACGGGTGGAACGGTAGACCA
TAATACTATGCGTTTTTTTTTCCCCTTTGATGGATGGGTGGTGTGAAGAG
TATCTCGGCCGATTGGCCTTTCCTCACCTAACCATGGGGGTGTGCATGTC
CGACGCAGATGGGTGGTTGTGAAATCGTGGGTATATTTTGTGGTATATTT
AATGATGAATGCGGTCTTCGGGTTGCAGCGGTATTACGGTGCCGAGGGAG
CCTGTTAGTCTGGCGAACATGAGAGACTGTTGCCTTGACGGCAATGGCTA
CGTTGTGATCTTGCCACACTCTGTGTTTCGTTGTTGCATTTTCATAGAAA
CAATTGCTCATCGCAGGCATGCCTGGACACGTAGCAAACCCCGTGTCGTG
GAGTCAGGCATGCCCTTTGTCCGCGGAAAGGAACTGTTGTAGAAACTGGC
AACTCTTCTTGTTTTCAAGCGGTGTTTCCTTCAAGTTGCAGGGCATATTG
TCCACCCACCAAAGGCTCTCAGTCTCCAAGGTCACCGGTTTCGGCGAAAT
GTTCGTTTTGCGGTCACGCTCGTACCTGGCCCTTCTCGTGGGCAAGCACG
GTTGGTGCGTTGAGTATACATAAACAGAAGGAGGTGTAGGCTGACGCGCA
GTACACATGGGACGATGATCCACACGGACGATGCGCTTCCCCCTCCGATG
CGCGGGTGGGATACATGTCCAAGAAGAATGTGTCGACCGTTTGGCCTTTC
GTCGCCTTCGCATAACGGTGCCCCCGATGCACACTGGTTGTCGTGAAAAA
CTAGTTATGCTGCTTTATTTTGACACTTGAATGTGCTTTTCGGTTGTGCA
GGAACGATACCGAGAGAGCTTGGGACCCTTGCAACCCTGCAGAAGCTGAA
CCTGAGCAAGAATGGCTTGACAGGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7034:2680..6504+

>mRNA_E_fasciculatus_S2_contig7034.15199.1 ID=mRNA_E_fasciculatus_S2_contig7034.15199.1|Name=mRNA_E_fasciculatus_S2_contig7034.15199.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=363bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7034:2680..6504+ (Ectocarpus fasciculatus EfasUO2)
GGTTCCATCCCGAAGGAGCTTGGGGGGCTGGTTAATCTGGACGACCTTCG
CCTCAATGACAACGAGCTCATAGGGGTGATGCCGGCGGAACTCGGGAGGC
TCAAGACGCTGCGGAAACTATGCCTTGACGGGAATGGCTTGACAGGTTCC
ATCCCGGAGGCGCTGGGGGGCCTTGTTAATCTGGAGGATCTTTGGCTCAG
CAACAACAACCTCAGAGGATCTATCCCGGTAGAGCTTGGGGACCTAGTGA
AGCTGCAGGAGCTCCACCTCGATGACAACAAGCTGACAGGAACGATACCG
AGAGAGCTTGGGACCCTTGCAACCCTGCAGAAGCTGAACCTGAGCAAGAA
TGGCTTGACAGGT
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